Rh7CG377900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001762
Physical Location & Seq
Reverse (-)
47526569 .. 47532789
6221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG377900.1

Sequence Viewer

Length: 1722 bp
ATGGATATGGCCGTCGATGATGACTTGTTGGTGAATCCTAAGCCGATGATGGAGGAGCCACAGGTCGACAACCGAGTTTATCCGATCCCCGATACAGTCCCAGATGAAAATTTGGAAAAAATTTTTCAGAACGCGAAATCGAAATTAGAAAAGTATGGCATCACAATCACTGTGAATGCGGCTGAGCGAACCCTCACATTCGTACAAGGGGTAAGTAAGTGGAACCCTGGCCCTGTCTTGAACAAATATGGCAAGTTTGAAATCACCACTTTCACTGTGCCCTTCCCCGAAAATCGAGCAACAAAGTTGAAACATGTTTGGCCCGACGTCGAAGAATTCTTGTATGAGTTTGCCATTTCATGCAATCTCAATTTGGCTGAGTGTTCCATGCAAGTCTCAACAACCACATTTCTTGATAGACAGTATCTCCTTGACAGAGCTAGACATCTCCTTCAACTGTTGTCCACAAGTCTTGTTCCGCCATATATGGCATTAGAAATATTCCAAGGCAGCAGGCAACATGAAATCATGGAGATAGGAGATCAGCAGGGGGGGCTTTGCACAAAATTTGGGGTCAAGAAGGGGGAATATCTTAAACGATGGGAATGCCTCTTCTACTCCCTAAAGGCACTTTCAAAAGCAACACAATGTCATATCTTTCTTAACGAGAACACTTTTACTGCTGTGACTGCTGTGGAGAATACAGTTGAAAGAATTTCATGGCTCAGGTCAGTTGTGGGAGACTGCATCACCAAAAATTTGTGTCCTGCAACCTCTATCAGGAAGTTTGGAAACGAATTTGGAATGCATCAATCGATGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGTGAGGTCTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGAGAAGGATTCCATGGCATTCACAACAACGAGATGTACTAATGAGCCAGATATCATTGACAAGGCTTTGCAGCTACTTGAACTTCTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTATGCAAACTTTCGTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCACTCCCTACAGGCAGTTGCCGAAACAGCGGAATGTAATGTATTTCTCAACTATTACACTGTTGCTGCTGTGGGGAATACTTCACTAGAATTGTTCAAGCAGTCAGTGGTAAACTGCTTTCTTCATAATCTGTGTCCTGGGACTGTTTGCACGGATTATAATTCTGCATCACGAGGGCTGGAAAATATTGAAGATCCACACGTCAAGCACATGGAGATGGAAAAATCGGGGTCATCGTTGCACATGCTTGAAGCCGAGTTTTACATGACAGTGTCTGTAACCACAAAGGCCGGGGAATCAAATATTAGTGACAAGATTTTGGACGTTCTTAAACTTTTATCAGTTGGTATTCCACCTTCTAAGGCAATACAAGTGCTGGAAGGCAAGCAATTTGATCAAGTGGTTTGGCAACGAGTTGATCTCGGTTTAGAGGAAATGGCAAGAATCATGAACTGTGATGTCAGGACTAGTCCAAATGTTATTACCGTCTGCGGTCCGCATGAACAAATGGATGAATTCAGCAAGTTTGTGCAATATTGCTTTGATTTGAGGTGTCAACCAACTTCTGCAATGGGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

573

Amino Acids

64.74

Weight (kDa)

5.01

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 90 - 158 1.6e-08 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1299
AatII GACGTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 134
AciI CCGC 5 cut(s) 179, 479, 1169, 1632, 1637
AclWI GGATC 5 cut(s) 79, 827, 840, 1106, 1328
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 8 cut(s) 109, 120, 335, 566, 714, 757, 797, 1655
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 204, 937
AfiI CCNNNNNNNGG 1 cut(s) 780
AflIII ACRYGT 2 cut(s) 313, 1339
AhlI ACTAGT 1 cut(s) 1607
AjiI CACGTC 1 cut(s) 1342
AjnI CCWGG 2 cut(s) 226, 1276
AluBI AGCT 2 cut(s) 440, 973
AluI AGCT 2 cut(s) 440, 973
Alw26I GTCTC 2 cut(s) 400, 735
AlwI GGATC 5 cut(s) 79, 827, 840, 1106, 1328
AlwNI CAGNNNCTG 1 cut(s) 1415
AoxI GGCC 4 cut(s) 9, 229, 320, 1428
ApeKI GCWGC 3 cut(s) 510, 970, 1205
ApoI RAATTY 8 cut(s) 109, 120, 335, 566, 714, 757, 797, 1655
Asp700I GAANNNNTTC 1 cut(s) 1134
AspS9I GGNCC 3 cut(s) 230, 321, 1634
AsuC2I CCSGG 1 cut(s) 1432
AsuHPI GGTGA 4 cut(s) 43, 256, 742, 871
AvaII GGWCC 1 cut(s) 1634
BaeGI GKGCMC 1 cut(s) 282
BamHI GGATCC 1 cut(s) 832
BarI GAAGNNNNNNTAC 2 cut(s) 1480, 1512
BauI CACGAG 1 cut(s) 1311
BbsI GAAGAC 1 cut(s) 1127
BbvI GCAGC 3 cut(s) 522, 982, 1192
BccI CCATC 7 cut(s) 43, 594, 811, 850, 1025, 1119, 1351
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 2 cut(s) 228, 1278
BclI TGATCA 1 cut(s) 1534
BcnI CCSGG 1 cut(s) 1432
BcoDI GTCTC 2 cut(s) 400, 735
BcuI ACTAGT 1 cut(s) 1607
BfaI CTAG 3 cut(s) 441, 1226, 1608
BfmI CTRYAG 1 cut(s) 1148
BisI GCNGC 4 cut(s) 180, 511, 971, 1206
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 4 cut(s) 181, 512, 972, 1207
Bme1390I CCNGG 3 cut(s) 228, 1278, 1432
Bme18I GGWCC 1 cut(s) 1634
BmgBI CACGTC 1 cut(s) 1342
BmgT120I GGNCC 3 cut(s) 230, 321, 1634
BmiI GGNNCC 3 cut(s) 57, 224, 834
BmrFI CCNGG 3 cut(s) 228, 1278, 1432
BmsI GCATC 4 cut(s) 168, 756, 817, 1316
BpiI GAAGAC 1 cut(s) 1127
BplI GAGNNNNNCTC 2 cut(s) 1545, 1577
Bpu10I CCTNAGC 2 cut(s) 39, 725
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 1432
Bsa29I ATCGAT 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 226, 505, 912, 1277, 1431
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse1I ACTGG 1 cut(s) 1004
Bse3DI GCAATG 1 cut(s) 1716
BseBI CCWGG 2 cut(s) 228, 1278
BseCI ATCGAT 1 cut(s) 815
BseDI CCNNGG 5 cut(s) 226, 505, 912, 1277, 1431
BseGI GGATG 3 cut(s) 826, 1036, 1657
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMI GCAATG 1 cut(s) 1716
BseMII CTCAG 5 cut(s) 174, 369, 739, 895, 1101
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 2 cut(s) 68, 1121
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 3 cut(s) 522, 982, 1192
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 11, 231, 322, 1430
BshVI ATCGAT 1 cut(s) 815
BsiSI CCGG 1 cut(s) 1431
BslFI GGGAC 2 cut(s) 83, 1294
BslI CCNNNNNNNGG 1 cut(s) 780
BsmAI GTCTC 2 cut(s) 400, 735
BsmFI GGGAC 2 cut(s) 83, 1294
BsmI GAATGC 4 cut(s) 181, 611, 810, 917
BsnI GGCC 4 cut(s) 11, 231, 322, 1430
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
Bsp1720I GCTNAGC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 5 cut(s) 179, 479, 1169, 1632, 1637
BspANI GGCC 4 cut(s) 11, 231, 322, 1430
BspCNI CTCAG 5 cut(s) 175, 370, 738, 894, 1100
BspDI ATCGAT 1 cut(s) 815
BspFNI CGCG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 1587
BspLI GGNNCC 3 cut(s) 57, 224, 834
BspPI GGATC 5 cut(s) 79, 827, 840, 1106, 1328
BsrDI GCAATG 1 cut(s) 1716
BsrI ACTGG 1 cut(s) 1004
BssECI CCNNGG 5 cut(s) 226, 505, 912, 1277, 1431
BssMI GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 1311
BssT1I CCWWGG 2 cut(s) 505, 912
Bst2BI CACGAG 1 cut(s) 1311
Bst2UI CCWGG 2 cut(s) 228, 1278
Bst6I CTCTTC 2 cut(s) 617, 894
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 515, 893, 1526
BstDEI CTNAG 7 cut(s) 39, 183, 378, 725, 881, 1087, 1500
BstDSI CCRYGG 1 cut(s) 912
BstENI CCTNNNNNAGG 1 cut(s) 778
BstF5I GGATG 3 cut(s) 826, 1036, 1657
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 8 cut(s) 87, 544, 826, 835, 1101, 1336, 1537, 1561
BstMAI GTCTC 2 cut(s) 400, 735
BstMBI GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
BstMWI GCNNNNNNNGC 3 cut(s) 553, 689, 1166
BstNI CCWGG 2 cut(s) 228, 1278
BstNSI RCATGY 4 cut(s) 317, 842, 895, 1387
BstSCI CCNGG 3 cut(s) 226, 1276, 1430
BstSFI CTRYAG 1 cut(s) 1148
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 522, 982, 1192
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 2 cut(s) 832, 1333
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 2 cut(s) 832, 1333
Bsu15I ATCGAT 1 cut(s) 815
BsuRI GGCC 4 cut(s) 11, 231, 322, 1430
BsuTUI ATCGAT 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 912
BtrI CACGTC 1 cut(s) 1342
BtsCI GGATG 3 cut(s) 826, 1036, 1657
BtsIMutI CAGTG 6 cut(s) 168, 273, 1108, 1197, 1251, 1416
Cac8I GCNNGC 3 cut(s) 515, 893, 1526
CaiI CAGNNNCTG 1 cut(s) 1415
CciI TCATGA 1 cut(s) 1587
Cfr13I GGNCC 3 cut(s) 230, 321, 1634
ClaI ATCGAT 1 cut(s) 815
CpoI CGGWCCG 1 cut(s) 1634
Csp6I GTAC 2 cut(s) 203, 936
CspCI CAANNNNNGTGG 4 cut(s) 394, 429, 454, 489
CspI CGGWCCG 1 cut(s) 1634
CviQI GTAC 2 cut(s) 203, 936
DdeI CTNAG 7 cut(s) 39, 183, 378, 725, 881, 1087, 1500
DpnI GATC 8 cut(s) 86, 543, 825, 834, 1100, 1335, 1536, 1560
DpnII GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 617, 894
EarI CTCTTC 2 cut(s) 617, 894
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 505, 912
Eco32I GATATC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 1634
Eco57I CTGAAG 1 cut(s) 918
EcoNI CCTNNNNNAGG 1 cut(s) 778
EcoRI GAATTC 2 cut(s) 335, 1655
EcoRII CCWGG 2 cut(s) 226, 1276
EcoRV GATATC 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 505, 912
EcoT22I ATGCAT 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 505, 912
FaqI GGGAC 2 cut(s) 83, 1294
FbaI TGATCA 1 cut(s) 1534
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 180, 511, 971, 1206
FokI GGATG 3 cut(s) 833, 1043, 1664
Fsp4HI GCNGC 4 cut(s) 180, 511, 971, 1206
FspBI CTAG 3 cut(s) 441, 1226, 1608
GluI GCNGC 4 cut(s) 180, 511, 971, 1206
HaeIII GGCC 4 cut(s) 11, 231, 322, 1430
HapII CCGG 1 cut(s) 1431
Hin1I GRCGYC 1 cut(s) 327
HincII GTYRAC 3 cut(s) 67, 990, 1697
HindII GTYRAC 3 cut(s) 67, 990, 1697
HinfI GANTC 5 cut(s) 34, 908, 1066, 1436, 1584
HpaII CCGG 1 cut(s) 1431
HphI GGTGA 4 cut(s) 43, 256, 742, 871
Hpy166II GTNNAC 5 cut(s) 67, 465, 990, 1252, 1697
Hpy188I TCNGA 4 cut(s) 84, 129, 884, 1090
Hpy188III TCNNGA 9 cut(s) 238, 413, 577, 781, 827, 1070, 1311, 1588, 1603
Hpy8I GTNNAC 5 cut(s) 67, 465, 990, 1252, 1697
Hpy99I CGWCG 3 cut(s) 17, 329, 332
HpyAV CCTTC 7 cut(s) 292, 461, 574, 898, 1067, 1506, 1514
HpyCH4IV ACGT 3 cut(s) 327, 1341, 1464
HpyF10VI GCNNNNNNNGC 3 cut(s) 553, 689, 1166
HpyF3I CTNAG 7 cut(s) 39, 183, 378, 725, 881, 1087, 1500
HpySE526I ACGT 3 cut(s) 327, 1341, 1464
Hsp92I GRCGYC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 1534
Kzo9I GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 3 cut(s) 522, 982, 1192
LweI GCATC 4 cut(s) 168, 756, 817, 1316
MaeI CTAG 3 cut(s) 441, 1226, 1608
MaeII ACGT 3 cut(s) 327, 1341, 1464
MaeIII GTNAC 3 cut(s) 685, 1417, 1448
MalI GATC 8 cut(s) 86, 543, 825, 834, 1100, 1335, 1536, 1560
MboI GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
MboII GAAGA 6 cut(s) 344, 604, 911, 1127, 1253, 1343
MflI RGATCY 2 cut(s) 832, 1333
MhlI GDGCHC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 810
MroXI GAANNNNTTC 1 cut(s) 1134
MseI TTAA 4 cut(s) 594, 663, 1056, 1470
MslI CAYNNNNRTG 3 cut(s) 854, 1355, 1409
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 1 cut(s) 1431
MspR9I CCNGG 3 cut(s) 228, 1278, 1432
Mva1269I GAATGC 4 cut(s) 181, 611, 810, 917
MvaI CCWGG 2 cut(s) 228, 1278
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 553, 689, 1166
NciI CCSGG 1 cut(s) 1432
NcoI CCATGG 1 cut(s) 912
NdeII GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
NlaIV GGNNCC 3 cut(s) 57, 224, 834
NmeAIII GCCGAG 1 cut(s) 1420
NmuCI GTSAC 2 cut(s) 685, 1448
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 4 cut(s) 317, 842, 895, 1387
PaeI GCATGC 1 cut(s) 895
PagI TCATGA 1 cut(s) 1587
PciI ACATGT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 1373
PctI GAATGC 4 cut(s) 181, 611, 810, 917
PdmI GAANNNNTTC 1 cut(s) 1134
PfeI GAWTC 5 cut(s) 34, 908, 1066, 1436, 1584
PflFI GACNNNGTC 1 cut(s) 1411
PkrI GCNGC 4 cut(s) 181, 512, 972, 1207
PscI ACATGT 1 cut(s) 313
PsiI TTATAA 1 cut(s) 1299
Psp6I CCWGG 2 cut(s) 226, 1276
PspGI CCWGG 2 cut(s) 226, 1276
PspN4I GGNNCC 3 cut(s) 57, 224, 834
PspPI GGNCC 3 cut(s) 230, 321, 1634
PstNI CAGNNNCTG 1 cut(s) 1415
PsuI RGATCY 2 cut(s) 832, 1333
PsyI GACNNNGTC 1 cut(s) 1411
RsaI GTAC 2 cut(s) 204, 937
RsaNI GTAC 2 cut(s) 203, 936
RseI CAYNNNNRTG 3 cut(s) 854, 1355, 1409
Rsr2I CGGWCCG 1 cut(s) 1634
RsrII CGGWCCG 1 cut(s) 1634
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 4 cut(s) 594, 663, 1056, 1470
SatI GCNGC 4 cut(s) 180, 511, 971, 1206
Sau3AI GATC 8 cut(s) 84, 541, 823, 832, 1098, 1333, 1534, 1558
Sau96I GGNCC 3 cut(s) 230, 321, 1634
ScrFI CCNGG 3 cut(s) 228, 1278, 1432
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 4 cut(s) 168, 756, 817, 1316
SfcI CTRYAG 1 cut(s) 1148
SinI GGWCC 1 cut(s) 1634
SmiMI CAYNNNNRTG 3 cut(s) 854, 1355, 1409
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SpeI ACTAGT 1 cut(s) 1607
SphI GCATGC 1 cut(s) 895
SsiI CCGC 5 cut(s) 179, 479, 1169, 1632, 1637
SspI AATATT 5 cut(s) 501, 1026, 1327, 1444, 1676
SspMI CTAG 3 cut(s) 441, 1226, 1608
StyD4I CCNGG 3 cut(s) 226, 1276, 1430
StyI CCWWGG 2 cut(s) 505, 912
TaiI ACGT 3 cut(s) 330, 1344, 1467
TaqI TCGA 6 cut(s) 15, 66, 140, 295, 330, 815
TatI WGTACW 1 cut(s) 935
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 5 cut(s) 34, 908, 1066, 1436, 1584
Tru1I TTAA 4 cut(s) 594, 663, 1056, 1470
Tru9I TTAA 4 cut(s) 594, 663, 1056, 1470
TscAI CASTG 6 cut(s) 175, 280, 1108, 1204, 1251, 1416
TseFI GTSAC 2 cut(s) 685, 1448
TseI GCWGC 3 cut(s) 510, 970, 1205
Tsp45I GTSAC 2 cut(s) 685, 1448
TspDTI ATGAA 8 cut(s) 120, 348, 537, 708, 1253, 1604, 1656, 1668
TspGWI ACGGA 1 cut(s) 1307
TspRI CASTG 6 cut(s) 175, 280, 1108, 1204, 1251, 1416
Tth111I GACNNNGTC 1 cut(s) 1411
VpaK11BI GGWCC 1 cut(s) 1634
XagI CCTNNNNNAGG 1 cut(s) 778
XapI RAATTY 8 cut(s) 109, 120, 335, 566, 714, 757, 797, 1655
XceI RCATGY 4 cut(s) 317, 842, 895, 1387
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 1134
XspI CTAG 3 cut(s) 441, 1226, 1608
ZraI GACGTC 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.