Rh7CG100000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001762
Physical Location & Seq
Reverse (-)
7485502 .. 7489701
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG100000.1

Sequence Viewer

Length: 1350 bp
ATGGATAAATCAGATTGTGAGGGACCAAACGCCGACGACCACATTCCCATCCTCGATGAAATTCTTCCTCCGGCGGAGCCAGAGATAGACGATTTGCACATAGATAAATCAGATTGTGAGGGACCACACGCCGACGACCACTGTGAGAGTGTTTTTCCCATCCTCGATGAAATTCTTCCTCCAGCGGAGCCAGAGATAGACGATGTGTACATAGATAATTCAGATTGTGAGGGACCAAACGCCGACGACCACTGTGAGAGTGTTTTTCCCATCCCCGATGAAATCCCAGATTCTAAATTGGAGGAATTTTTTCTGCAAATGAAATCGAAATATGAACCTTGCTATAGAGCCACACTGGATAAGGCTGCGCGAACCATCACATTCTCTCAACAACCACTCAAGTTGATGCCTGGTCCTGCTTTGAACAAATATGGCGTGCTTGAACTCACCACTTTCTTTGTGTACTTCCCCGAAAAACGAGCAACAAAGTTGAAAGCCGCATGGCCTGAGGTTGAATTAACCTTAGATGCCTACTCCCTTTCATGCGATCTGAATCTGGCCAAGTGTTGCATGCAAGTCTCAACAACCCCATCGCTTGAGGATCCATGTATGATTGAAAAGGCTAGGCATCTCCTTGAACTGTTGTCCACAAGTCTTGTTCCACCATATATGGCGTTAGAAATATTCCAAGAAGTTAGGCAACAGGAAACCATCAACATAGGATTTCAGCAGGGTGGGATTTGCTCAAAATTTGGGATCAAGAAGGATGACTATCTTAAACGATGGGAATGTCTCTTCTGCTCGCTAAAGGCACTTTCAAAAGCGACACATTGTCATATCTTTCTTGACGAAAACACTTTTACTGCTGTGACTGCTGTGGGTAGCTCAGTTGAAAGAATTTCTCAGCTGAAGGCTGTTGTGGAAGACTGTATAACCAAGAATCTGTGTCCTTCGACCTCTATTAGGAGGTTTGAAACGGAGGTTGTAATGTATCAATCGATGGATGATCTTGATGATCCACATGCCAAGCACACGGAATGCTTTAAGTCTGGACCTTTGTCGGACAAAGATGGAATGTTTGAAGATAAGAATTCGATGGTATTGTCAGCAACGAGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGCGTGCAAACTTGCCTTATCAAAATTGGGAATCAAGAAGGTGGACTCTGCTCATTATTTGGGATCAAGGAGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

449

Amino Acids

50.56

Weight (kDa)

4.57

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 151 - 229 9.1e-11 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1118
AccB1I GGYRCC 1 cut(s) 1118
AccII CGCG 1 cut(s) 370
AciI CCGC 3 cut(s) 74, 185, 498
AclWI GGATC 5 cut(s) 596, 609, 764, 1010, 1286
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 6 cut(s) 60, 171, 305, 749, 897, 1090
AcuI CTGAAG 1 cut(s) 929
AfaI GTAC 3 cut(s) 209, 464, 1120
AfiI CCNNNNNNNGG 1 cut(s) 963
AhdI GACNNNNNGTC 1 cut(s) 831
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 3 cut(s) 885, 907, 1156
AluI AGCT 3 cut(s) 885, 907, 1156
Alw26I GTCTC 2 cut(s) 583, 797
AlwI GGATC 5 cut(s) 596, 609, 764, 1010, 1286
AoxI GGCC 2 cut(s) 503, 558
ApeKI GCWGC 2 cut(s) 365, 1153
ApoI RAATTY 6 cut(s) 60, 171, 305, 749, 897, 1090
Asp700I GAANNNNTTC 4 cut(s) 63, 174, 309, 1314
Asp718I GGTACC 1 cut(s) 1118
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 5 cut(s) 23, 122, 233, 413, 1052
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 5 cut(s) 23, 122, 233, 413, 1052
AxyI CCTNAGG 1 cut(s) 507
BalI TGGCCA 1 cut(s) 560
BamHI GGATCC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 1118
BbsI GAAGAC 2 cut(s) 930, 1307
BbvI GCAGC 2 cut(s) 352, 1165
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 583, 797
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 2 cut(s) 343, 1328
BisI GCNGC 3 cut(s) 366, 498, 1154
BlsI GCNGC 3 cut(s) 367, 499, 1155
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 5 cut(s) 23, 122, 233, 413, 1052
BmeRI GACNNNNNGTC 1 cut(s) 831
BmgT120I GGNCC 5 cut(s) 23, 122, 233, 413, 1052
BmiI GGNNCC 8 cut(s) 24, 78, 123, 189, 234, 603, 1120, 1128
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 4 cut(s) 396, 517, 637, 1199
BoxI GACNNNNGTC 1 cut(s) 1057
BpiI GAAGAC 2 cut(s) 930, 1307
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 383, 617
Bsa29I ATCGAT 1 cut(s) 998
BsaBI GATNNNNATC 2 cut(s) 552, 771
BsaJI CCNNGG 1 cut(s) 1122
Bsc4I CCNNNNNNNGG 1 cut(s) 963
Bse1I ACTGG 1 cut(s) 360
Bse21I CCTNAGG 1 cut(s) 507
Bse8I GATNNNNATC 2 cut(s) 552, 771
BseBI CCWGG 1 cut(s) 411
BseCI ATCGAT 1 cut(s) 998
BseDI CCNNGG 1 cut(s) 1122
BseGI GGATG 5 cut(s) 48, 159, 270, 772, 1009
BseJI GATNNNNATC 2 cut(s) 552, 771
BseLI CCNNNNNNNGG 1 cut(s) 963
BseMII CTCAG 3 cut(s) 498, 900, 917
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 1301
BseXI GCAGC 2 cut(s) 352, 1165
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 505, 560
BshNI GGYRCC 1 cut(s) 1118
BshVI ATCGAT 1 cut(s) 998
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 3 cut(s) 36, 135, 246
BslI CCNNNNNNNGG 1 cut(s) 963
BsmAI GTCTC 2 cut(s) 583, 797
BsmFI GGGAC 3 cut(s) 36, 135, 246
BsmI GAATGC 1 cut(s) 1043
BsnI GGCC 2 cut(s) 505, 560
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
BspACI CCGC 3 cut(s) 74, 185, 498
BspANI GGCC 2 cut(s) 505, 560
BspCNI CTCAG 3 cut(s) 499, 899, 916
BspDI ATCGAT 1 cut(s) 998
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 8 cut(s) 24, 78, 123, 189, 234, 603, 1120, 1128
BspPI GGATC 5 cut(s) 596, 609, 764, 1010, 1286
BspT107I GGYRCC 1 cut(s) 1118
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 1122
BssMI GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
BssT1I CCWWGG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 5 cut(s) 143, 254, 642, 929, 1298
Bst6I CTCTTC 1 cut(s) 800
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 437, 572, 803, 1220
BstDEI CTNAG 4 cut(s) 507, 523, 886, 903
BstENI CCTNNNNNAGG 1 cut(s) 961
BstF5I GGATG 5 cut(s) 48, 159, 270, 772, 1009
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 6 cut(s) 550, 604, 759, 1009, 1018, 1281
BstMAI GTCTC 2 cut(s) 583, 797
BstMBI GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
BstMWI GCNNNNNNNGC 2 cut(s) 872, 1196
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 574, 1025
BstPAI GACNNNNGTC 1 cut(s) 1057
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 2 cut(s) 343, 1328
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 352, 1165
BstV2I GAAGAC 2 cut(s) 930, 1307
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu15I ATCGAT 1 cut(s) 998
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 2 cut(s) 505, 560
BsuTUI ATCGAT 1 cut(s) 998
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 5 cut(s) 48, 159, 270, 772, 1009
BtsIMutI CAGTG 3 cut(s) 139, 250, 353
Cac8I GCNNGC 4 cut(s) 437, 572, 803, 1220
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 5 cut(s) 23, 122, 233, 413, 1052
ClaI ATCGAT 1 cut(s) 998
Csp6I GTAC 3 cut(s) 208, 463, 1119
CspCI CAANNNNNGTGG 6 cut(s) 384, 419, 439, 474, 637, 672
CviAII CATG 6 cut(s) 501, 543, 571, 606, 1022, 1181
CviQI GTAC 3 cut(s) 208, 463, 1119
DdeI CTNAG 4 cut(s) 507, 523, 886, 903
DpnI GATC 6 cut(s) 549, 603, 758, 1008, 1017, 1280
DpnII GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
DriI GACNNNNNGTC 1 cut(s) 831
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 800
Eam1105I GACNNNNNGTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 800
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 1122
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 5 cut(s) 23, 122, 233, 413, 1052
Eco57I CTGAAG 1 cut(s) 929
Eco81I CCTNAGG 1 cut(s) 507
EcoNI CCTNNNNNAGG 1 cut(s) 961
EcoRI GAATTC 1 cut(s) 1090
EcoRII CCWGG 1 cut(s) 409
EcoRV GATATC 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 1122
FaeI CATG 6 cut(s) 504, 546, 574, 609, 1025, 1184
FaqI GGGAC 3 cut(s) 36, 135, 246
FatI CATG 6 cut(s) 500, 542, 570, 605, 1021, 1180
Fnu4HI GCNGC 3 cut(s) 366, 498, 1154
FokI GGATG 5 cut(s) 35, 146, 257, 779, 1016
Fsp4HI GCNGC 3 cut(s) 366, 498, 1154
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 366, 498, 1154
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 505, 560
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 370
Hin1II CATG 6 cut(s) 504, 546, 574, 609, 1025, 1184
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HinfI GANTC 5 cut(s) 290, 553, 940, 1246, 1260
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 6 cut(s) 208, 463, 648, 1173, 1259, 1301
Hpy188I TCNGA 5 cut(s) 13, 112, 223, 552, 1063
Hpy188III TCNNGA 5 cut(s) 760, 845, 1010, 1050, 1250
Hpy8I GTNNAC 6 cut(s) 208, 463, 648, 1173, 1259, 1301
Hpy99I CGWCG 3 cut(s) 38, 137, 248
HpyAV CCTTC 4 cut(s) 757, 904, 960, 1247
HpyCH4III ACNGT 5 cut(s) 143, 254, 642, 929, 1298
HpyCH4V TGCA 5 cut(s) 97, 316, 570, 574, 1222
HpyF10VI GCNNNNNNNGC 2 cut(s) 872, 1196
HpyF3I CTNAG 4 cut(s) 507, 523, 886, 903
Hsp92II CATG 6 cut(s) 504, 546, 574, 609, 1025, 1184
HspAI GCGC 1 cut(s) 368
KpnI GGTACC 1 cut(s) 1122
Kzo9I GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
LmnI GCTCC 4 cut(s) 76, 187, 1126, 1161
Lsp1109I GCAGC 2 cut(s) 352, 1165
LweI GCATC 4 cut(s) 396, 517, 637, 1199
MaeI CTAG 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 868
MalI GATC 6 cut(s) 549, 603, 758, 1008, 1017, 1280
MboI GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
MboII GAAGA 6 cut(s) 56, 167, 787, 935, 1094, 1307
MflI RGATCY 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 560
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 1254
MmeI TCCRAC 1 cut(s) 1041
Mox20I TGGCCA 1 cut(s) 560
MroXI GAANNNNTTC 4 cut(s) 63, 174, 309, 1314
MscI TGGCCA 1 cut(s) 560
MseI TTAA 3 cut(s) 518, 777, 1044
Msp20I TGGCCA 1 cut(s) 560
MspA1I CMGCKG 2 cut(s) 185, 907
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 1043
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 872, 1196
NdeII GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
NlaIII CATG 6 cut(s) 504, 546, 574, 609, 1025, 1184
NlaIV GGNNCC 8 cut(s) 24, 78, 123, 189, 234, 603, 1120, 1128
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 2 cut(s) 574, 1025
PaeI GCATGC 1 cut(s) 574
PctI GAATGC 1 cut(s) 1043
PdmI GAANNNNTTC 4 cut(s) 63, 174, 309, 1314
PfeI GAWTC 4 cut(s) 290, 553, 940, 1246
PkrI GCNGC 3 cut(s) 367, 499, 1155
PleI GAGTC 1 cut(s) 1254
PpsI GAGTC 1 cut(s) 1254
PshAI GACNNNNGTC 1 cut(s) 1057
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 8 cut(s) 24, 78, 123, 189, 234, 603, 1120, 1128
PspPI GGNCC 5 cut(s) 23, 122, 233, 413, 1052
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 907
RsaI GTAC 3 cut(s) 209, 464, 1120
RsaNI GTAC 3 cut(s) 208, 463, 1119
SaqAI TTAA 3 cut(s) 518, 777, 1044
SatI GCNGC 3 cut(s) 366, 498, 1154
Sau3AI GATC 6 cut(s) 547, 601, 756, 1006, 1015, 1278
Sau96I GGNCC 5 cut(s) 23, 122, 233, 413, 1052
SchI GAGTC 1 cut(s) 1254
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 4 cut(s) 396, 517, 637, 1199
SfcI CTRYAG 2 cut(s) 343, 1328
SinI GGWCC 5 cut(s) 23, 122, 233, 413, 1052
SmlI CTYRAG 2 cut(s) 398, 596
SmoI CTYRAG 2 cut(s) 398, 596
SphI GCATGC 1 cut(s) 574
SsiI CCGC 3 cut(s) 74, 185, 498
SspI AATATT 1 cut(s) 684
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 5 cut(s) 143, 254, 642, 929, 1298
TaqI TCGA 6 cut(s) 54, 165, 326, 953, 998, 1094
TatI WGTACW 2 cut(s) 207, 462
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 4 cut(s) 290, 553, 940, 1246
Tru1I TTAA 3 cut(s) 518, 777, 1044
Tru9I TTAA 3 cut(s) 518, 777, 1044
TscAI CASTG 3 cut(s) 146, 257, 360
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 2 cut(s) 365, 1153
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 6 cut(s) 72, 183, 294, 335, 348, 531
TspGWI ACGGA 2 cut(s) 992, 1049
TspRI CASTG 3 cut(s) 146, 257, 360
VpaK11BI GGWCC 5 cut(s) 23, 122, 233, 413, 1052
XagI CCTNNNNNAGG 1 cut(s) 961
XapI RAATTY 6 cut(s) 60, 171, 305, 749, 897, 1090
XceI RCATGY 2 cut(s) 574, 1025
XmnI GAANNNNTTC 4 cut(s) 63, 174, 309, 1314
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.