FvH4_5g09770

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001762
Physical Location & Seq
Reverse (-)
5604422 .. 5606282
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09770.t1

Sequence Viewer

Length: 648 bp
ATGCACGGTTCAGCCAGTAGTCCTTCTCCGGCGGAGCCAGACTATATGAGTACTGAGGATGTTTTTCCCATCCCCGATCAAATTCCAGATTCTGAAGTGGAGGGATTTGTTCAGCAATTGAAATCGACTTTGGGAATTGGCTATACAGTCACACTGGATATGGACAAAAATGGGGTTCCTCATTTCATCACTTACGATGTGCCCTTGCCAGAAGAACGAGCAAAAAAGATGAAAGACTCATGGCAGGAAATTGAATTAACCTTATATCGCGACTCCATTTCATGTGATCTGAATCTTGCCAAATGTAGCATGCAAGTCTCGACAACCACATCGCTTAAGGATCCATGTATGGTTGGAAAGGCTTGGAATCTCCTTGAACTGTTGTCCACGACTCCTGTTCCGCTATATATGGCATTTGAAATATTCAAAGACGTTAGGCAACAGGAGATCATCAACATAGGATTTCAGAACGGTGGGATTTGCTCAAATTTTGGGATCAAGAAGGATGATTATCTTAAACGTTGGGAATGTCTCTTCTGCTCACTAAAGGCACTTTCAAAAGTGGCATGTTGTCATATCTTTCTTGACGAAAACACTTTTACTGCTGTGCTGCTGTGGGTAGCTCATTTGAAAAACTTTCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

216

Amino Acids

24.25

Weight (kDa)

4.9

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 69 - 144 1.1e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 32, 401
AclI AACGTT 1 cut(s) 520
AclWI GGATC 3 cut(s) 335, 348, 503
AcsI RAATTY 2 cut(s) 81, 487
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 52
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 7 cut(s) 121, 254, 377, 419, 427, 558, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 623
AluI AGCT 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 322, 536
AlwI GGATC 3 cut(s) 335, 348, 503
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 610
ApoI RAATTY 2 cut(s) 81, 487
BaeGI GKGCMC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 597
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 322, 536
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 612
BmcAI AGTACT 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 36, 177, 342
BsaBI GATNNNNATC 2 cut(s) 291, 510
Bse1I ACTGG 2 cut(s) 15, 159
Bse8I GATNNNNATC 2 cut(s) 291, 510
BseGI GGATG 3 cut(s) 64, 69, 511
BseJI GATNNNNATC 2 cut(s) 291, 510
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 15, 159
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 322, 536
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 5 cut(s) 76, 286, 340, 447, 495
Bsp68I TCGCGA 1 cut(s) 270
BspACI CCGC 2 cut(s) 32, 401
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 36, 177, 342
BspPI GGATC 3 cut(s) 335, 348, 503
BspTI CTTAAG 1 cut(s) 335
BsrI ACTGG 2 cut(s) 15, 159
BssMI GATC 5 cut(s) 76, 286, 340, 447, 495
Bst4CI ACNGT 4 cut(s) 8, 148, 381, 473
Bst6I CTCTTC 1 cut(s) 539
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 64, 69, 511
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 5 cut(s) 79, 289, 343, 450, 498
BstMAI GTCTC 2 cut(s) 322, 536
BstMBI GATC 5 cut(s) 76, 286, 340, 447, 495
BstNSI RCATGY 2 cut(s) 313, 570
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 64, 69, 511
BtsIMutI CAGTG 1 cut(s) 152
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 92
Csp6I GTAC 1 cut(s) 51
CviAII CATG 5 cut(s) 240, 282, 310, 345, 567
CviJI RGCY 5 cut(s) 14, 37, 141, 362, 623
CviKI_1 RGCY 5 cut(s) 14, 37, 141, 362, 623
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 54
DpnI GATC 5 cut(s) 78, 288, 342, 449, 497
DpnII GATC 5 cut(s) 76, 286, 340, 447, 495
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 5 cut(s) 243, 285, 313, 348, 570
FatI CATG 5 cut(s) 239, 281, 309, 344, 566
Fnu4HI GCNGC 1 cut(s) 611
FokI GGATG 3 cut(s) 56, 71, 518
Fsp4HI GCNGC 1 cut(s) 611
GluI GCNGC 1 cut(s) 611
HapII CCGG 1 cut(s) 29
Hin1II CATG 5 cut(s) 243, 285, 313, 348, 570
HinfI GANTC 6 cut(s) 89, 236, 272, 292, 367, 391
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 94, 291, 468
Hpy188III TCNNGA 5 cut(s) 86, 269, 319, 499, 584
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 33, 496
HpyCH4III ACNGT 4 cut(s) 8, 148, 381, 473
HpyCH4IV ACGT 2 cut(s) 432, 520
HpyCH4V TGCA 2 cut(s) 4, 313
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 432, 520
Hsp92II CATG 5 cut(s) 243, 285, 313, 348, 570
Kzo9I GATC 5 cut(s) 76, 286, 340, 447, 495
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 28, 42, 51, 99, 140, 222, 230, 408, 428
Lsp1109I GCAGC 1 cut(s) 597
MaeII ACGT 2 cut(s) 432, 520
MaeIII GTNAC 1 cut(s) 148
MalI GATC 5 cut(s) 78, 288, 342, 449, 497
MboI GATC 5 cut(s) 76, 286, 340, 447, 495
MboII GAAGA 2 cut(s) 224, 526
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 6 cut(s) 81, 116, 135, 249, 254, 487
MlyI GAGTC 3 cut(s) 230, 266, 385
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 3 cut(s) 49, 94, 189
MseI TTAA 3 cut(s) 257, 336, 516
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 116
MvnI CGCG 1 cut(s) 270
NdeII GATC 5 cut(s) 76, 286, 340, 447, 495
NlaIII CATG 5 cut(s) 243, 285, 313, 348, 570
NlaIV GGNNCC 3 cut(s) 36, 177, 342
NmuCI GTSAC 1 cut(s) 148
NruI TCGCGA 1 cut(s) 270
NspI RCATGY 2 cut(s) 313, 570
PaeI GCATGC 1 cut(s) 313
PfeI GAWTC 3 cut(s) 89, 292, 367
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 3 cut(s) 230, 266, 385
PpsI GAGTC 3 cut(s) 230, 266, 385
Psp1406I AACGTT 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 36, 177, 342
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 340
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 257, 336, 516
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 5 cut(s) 76, 286, 340, 447, 495
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 3 cut(s) 230, 266, 385
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 263, 435, 523, 625
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 313
Sse9I AATT 6 cut(s) 81, 116, 135, 249, 254, 487
SsiI CCGC 2 cut(s) 32, 401
SspI AATATT 1 cut(s) 423
TaaI ACNGT 4 cut(s) 8, 148, 381, 473
TaiI ACGT 2 cut(s) 435, 523
TaqI TCGA 2 cut(s) 125, 320
TasI AATT 6 cut(s) 81, 116, 135, 249, 254, 487
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 3 cut(s) 89, 292, 367
Tru1I TTAA 3 cut(s) 257, 336, 516
Tru9I TTAA 3 cut(s) 257, 336, 516
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 175, 245, 270
TspRI CASTG 1 cut(s) 159
Vha464I CTTAAG 1 cut(s) 335
XapI RAATTY 2 cut(s) 81, 487
XceI RCATGY 2 cut(s) 313, 570
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.