Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285797.1

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 859

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285797.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 859 bp

agagatagacgatgtgtacatagataattcagattgtgagggaccaaacgccgacgaccactgtgagagtgtttttcccatccccgatgaaatcccagattctaaattggaggaattttttctgcaaatgaaatcgaactatgaaccttgctatagagccacactggataaggctgcgcgaaccatcacattctctcaacaaccactcaagttgatgcctggtcctgctttgaacaaatatggcgttcttgaactcaacactttctttgtgtacttccccgaaaaacgagcaacaaagttgaaagccgcatggcctgagattgaattaaccttaaatgcctactccctttcatgcgatctgaatctggccaagtgttgcatgcaagtctcaacaaccacatcgcttaaggatccatgtatgattggaaaggctaggcatctccttaaactgttgtccacaagtcttgttccgccatatatggcgttagaaatattccaagaagttaggcaacaggaaaccatcaacataggatttcagcaggatgggatttgctcaaaatttgggatcaagaaggatgactatcttaaacgatgggaatgtctcttctgctcgcgaaaggcactttcaaaagcgacacattgtcatatctttcttgacgaaaacacttttactgatgtgactgctgtgggtagctcagttgaaagaatttctcagatgaaggctgttgtggaagactgtataaccaagaatctgtgtccttcgacctctattaggagatttgaaacggaagttgtaatgtatcaatcgatggatgatcttgatgatccacatgccaagcacacggaatgcttgaagtct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

286

Amino Acids

32.53

Weight (kDa)

5.17

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	179, 614
AciI	CCGC	2 cut(s)	307, 471
AclWI	GGATC	4 cut(s)	405, 418, 573, 819
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	114, 558, 706
AfaI	GTAC	2 cut(s)	18, 273
AfiI	CCNNNNNNNGG	1 cut(s)	772
AflII	CTTAAG	1 cut(s)	405
AgsI	TTSAA	8 cut(s)	233, 252, 302, 324, 628, 702, 783, 854
AhdI	GACNNNNNGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	694
AluI	AGCT	1 cut(s)	694
Alw26I	GTCTC	2 cut(s)	392, 606
AlwI	GGATC	4 cut(s)	405, 418, 573, 819
AoxI	GGCC	2 cut(s)	312, 367
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	3 cut(s)	114, 558, 706
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	42, 222
AvaII	GGWCC	2 cut(s)	42, 222
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	739
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	6 cut(s)	87, 192, 528, 537, 586, 803
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	392, 606
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	175, 307
BlsI	GCNGC	2 cut(s)	176, 308
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	2 cut(s)	42, 222
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	42, 222
BmiI	GGNNCC	2 cut(s)	43, 412
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	205, 446
BpiI	GAAGAC	1 cut(s)	739
BpuEI	CTTGAG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	807
BsaBI	GATNNNNATC	2 cut(s)	361, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	2 cut(s)	361, 580
BseBI	CCWGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	807
BseGI	GGATG	4 cut(s)	79, 548, 581, 818
BseJI	GATNNNNATC	2 cut(s)	361, 580
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMII	CTCAG	3 cut(s)	307, 709, 726
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	179, 614
BshFI	GGCC	2 cut(s)	314, 369
BshVI	ATCGAT	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	2 cut(s)	392, 606
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	2 cut(s)	314, 369
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	5 cut(s)	356, 410, 565, 815, 824
Bsp68I	TCGCGA	1 cut(s)	614
BspACI	CCGC	2 cut(s)	307, 471
BspANI	GGCC	2 cut(s)	314, 369
BspCNI	CTCAG	3 cut(s)	308, 708, 725
BspDI	ATCGAT	1 cut(s)	807
BspFNI	CGCG	2 cut(s)	179, 614
BspLI	GGNNCC	2 cut(s)	43, 412
BspPI	GGATC	4 cut(s)	405, 418, 573, 819
BspTI	CTTAAG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	5 cut(s)	356, 410, 565, 815, 824
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	63, 451, 738
Bst6I	CTCTTC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	381, 612
BstDEI	CTNAG	3 cut(s)	316, 695, 712
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstF5I	GGATG	4 cut(s)	79, 548, 581, 818
BstFNI	CGCG	2 cut(s)	179, 614
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	5 cut(s)	359, 413, 568, 818, 827
BstMAI	GTCTC	2 cut(s)	392, 606
BstMBI	GATC	5 cut(s)	356, 410, 565, 815, 824
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	2 cut(s)	383, 834
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	152
BstUI	CGCG	2 cut(s)	179, 614
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	314, 369
BsuTUI	ATCGAT	1 cut(s)	807
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	4 cut(s)	79, 548, 581, 818
BtsIMutI	CAGTG	2 cut(s)	59, 162
BtuMI	TCGCGA	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	381, 612
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	42, 222
ClaI	ATCGAT	1 cut(s)	807
Csp6I	GTAC	2 cut(s)	17, 272
CspCI	CAANNNNNGTGG	4 cut(s)	193, 228, 446, 481
CviAII	CATG	5 cut(s)	310, 352, 380, 415, 831
CviJI	RGCY	8 cut(s)	159, 174, 306, 314, 369, 432, 694, 723
CviKI_1	RGCY	8 cut(s)	159, 174, 306, 314, 369, 432, 694, 723
CviQI	GTAC	2 cut(s)	17, 272
DdeI	CTNAG	3 cut(s)	316, 695, 712
DpnI	GATC	5 cut(s)	358, 412, 567, 817, 826
DpnII	GATC	5 cut(s)	356, 410, 565, 815, 824
DriI	GACNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	42, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	218
FaeI	CATG	5 cut(s)	313, 355, 383, 418, 834
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	5 cut(s)	309, 351, 379, 414, 830
Fnu4HI	GCNGC	2 cut(s)	175, 307
FokI	GGATG	4 cut(s)	66, 555, 588, 825
Fsp4HI	GCNGC	2 cut(s)	175, 307
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	175, 307
HaeIII	GGCC	2 cut(s)	314, 369
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	313, 355, 383, 418, 834
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	99, 362, 749
Hpy166II	GTNNAC	3 cut(s)	17, 272, 457
Hpy188I	TCNGA	3 cut(s)	32, 361, 715
Hpy188III	TCNNGA	5 cut(s)	249, 569, 613, 654, 819
Hpy8I	GTNNAC	3 cut(s)	17, 272, 457
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	566, 713, 769
HpyCH4III	ACNGT	3 cut(s)	63, 451, 738
HpyCH4V	TGCA	3 cut(s)	125, 379, 383
HpyF3I	CTNAG	3 cut(s)	316, 695, 712
Hsp92II	CATG	5 cut(s)	313, 355, 383, 418, 834
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	356, 410, 565, 815, 824
LpnPI	CCDG	9 cut(s)	109, 150, 205, 232, 238, 328, 351, 498, 525
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	2 cut(s)	205, 446
MaeI	CTAG	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	5 cut(s)	358, 412, 567, 817, 826
MboI	GATC	5 cut(s)	356, 410, 565, 815, 824
MboII	GAAGA	2 cut(s)	596, 744
MflI	RGATCY	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	6 cut(s)	26, 105, 114, 324, 558, 706
MluNI	TGGCCA	1 cut(s)	369
MnlI	CCTC	3 cut(s)	32, 104, 776
Mox20I	TGGCCA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	5 cut(s)	327, 333, 406, 445, 586
Msp20I	TGGCCA	1 cut(s)	369
MspCI	CTTAAG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	2 cut(s)	179, 614
NdeII	GATC	5 cut(s)	356, 410, 565, 815, 824
NlaIII	CATG	5 cut(s)	313, 355, 383, 418, 834
NlaIV	GGNNCC	2 cut(s)	43, 412
NmuCI	GTSAC	1 cut(s)	677
NruI	TCGCGA	1 cut(s)	614
NspI	RCATGY	2 cut(s)	383, 834
PaeI	GCATGC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	99, 362, 749
PkrI	GCNGC	2 cut(s)	176, 308
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	43, 412
PspPI	GGNCC	2 cut(s)	42, 222
PsuI	RGATCY	1 cut(s)	410
RruI	TCGCGA	1 cut(s)	614
RsaI	GTAC	2 cut(s)	18, 273
RsaNI	GTAC	2 cut(s)	17, 272
SaqAI	TTAA	5 cut(s)	327, 333, 406, 445, 586
SatI	GCNGC	2 cut(s)	175, 307
Sau3AI	GATC	5 cut(s)	356, 410, 565, 815, 824
Sau96I	GGNCC	2 cut(s)	42, 222
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	4 cut(s)	149, 333, 696, 768
SfaNI	GCATC	2 cut(s)	205, 446
SfcI	CTRYAG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	42, 222
SmlI	CTYRAG	2 cut(s)	207, 405
SmoI	CTYRAG	2 cut(s)	207, 405
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	6 cut(s)	26, 105, 114, 324, 558, 706
SsiI	CCGC	2 cut(s)	307, 471
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	63, 451, 738
TaqI	TCGA	3 cut(s)	135, 762, 807
TasI	AATT	6 cut(s)	26, 105, 114, 324, 558, 706
TatI	WGTACW	2 cut(s)	16, 271
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	99, 362, 749
Tru1I	TTAA	5 cut(s)	327, 333, 406, 445, 586
Tru9I	TTAA	5 cut(s)	327, 333, 406, 445, 586
TscAI	CASTG	2 cut(s)	66, 169
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	103, 144, 157, 340, 732
TspGWI	ACGGA	2 cut(s)	801, 858
TspRI	CASTG	2 cut(s)	66, 169
Vha464I	CTTAAG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	42, 222
XagI	CCTNNNNNAGG	1 cut(s)	770
XapI	RAATTY	3 cut(s)	114, 558, 706
XceI	RCATGY	2 cut(s)	383, 834
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.