RchiOBHm_Chr7g0223281

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001762
Physical Location & Seq
Reverse (-)
44951286 .. 44960959
9674 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19992

Sequence Viewer

Length: 999 bp
ATGCATCAATCGATGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGTGAGGTCTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGTCTGCTCTCTCTATACGTTACTCCATGAAAAACGAGCAAAGTTGCTAGAAGCTTCGTCGATGCTGGAGTCTTCCCTAAGTAACTATGGCATTTCATGTACTCTGGAGAAGGATTCCATGGCATTCACAACAACGAGATGTACTAATGAGCCAGATATCATTGACAAGGCTTTTCAGCTACTTGAACTTCTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTATGCAAACTTGCGTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCACTCCCTACAGGCAGTTGCCGAAACGGCGGAATGTAATGTATTTCTCAACTATTACACTGTTGCTGCTGTGGGGAAAACTTCACTAGAATTGTTCAAGCAGTCAGTGGTAAACTGCTTTCTTCATAATCTGTGTCCTGGGACTGTTTGCACGGATTATAATTCTGCATCACGAGGGCTGGAAAATATTGAAGATCCACACGTCAAGCACATGGAGATGGAAAAATCGGGGTCGTCGTTGCACATGCTTGAAGTCAGCTCCTTCTGTACATTCTTTTCGCAACTACAAGCAACTCAGTTGTATGATAATTGGTCAATTGTGGAATCGTGTTTACAAAAGCATGACATTTCGTGCAAACTGGTTGCGGCCGAGTTTTACATGACAGTGTCTGTAACCACAAAGGCCGGGGAATCAAATATTAGTGACAAGATTTTGGACGTTCTTAAACTTTTATCAGTTGGTATTCCACCTTCTAAGGCAATACAAGTGCTGGAAGGCAGTATGTACTATGACTTCATCCGGACAGGGTCTCAGTATGGCGGGTTTTGCTTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

332

Amino Acids

37.07

Weight (kDa)

4.97

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 233 - 312 2.3e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AccIII TCCGGA 1 cut(s) 960
AciI CCGC 3 cut(s) 470, 806, 981
AclWI GGATC 4 cut(s) 23, 36, 407, 629
AcoI YGGCCR 1 cut(s) 807
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 4 cut(s) 196, 238, 709, 947
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 4 cut(s) 281, 538, 632, 692
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 3 cut(s) 149, 274, 699
AluI AGCT 3 cut(s) 149, 274, 699
Alw26I GTCTC 1 cut(s) 975
AlwI GGATC 4 cut(s) 23, 36, 407, 629
AlwNI CAGNNNCTG 1 cut(s) 830
Aor13HI TCCGGA 1 cut(s) 960
AoxI GGCC 2 cut(s) 807, 843
ApeKI GCWGC 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 847
AsuHPI GGTGA 1 cut(s) 67
BamHI GGATCC 1 cut(s) 28
BarI GAAGNNNNNNTAC 4 cut(s) 895, 927, 938, 970
BauI CACGAG 1 cut(s) 612
BbsI GAAGAC 2 cut(s) 159, 428
BbvI GCAGC 1 cut(s) 493
BccI CCATC 5 cut(s) 7, 46, 326, 420, 652
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 1 cut(s) 579
BcnI CCSGG 1 cut(s) 847
BcoDI GTCTC 1 cut(s) 975
BfaI CTAG 2 cut(s) 143, 527
BfmI CTRYAG 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 2 cut(s) 507, 807
BlsI GCNGC 2 cut(s) 508, 808
Bme1390I CCNGG 2 cut(s) 579, 847
BmgBI CACGTC 1 cut(s) 643
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 579, 847
BmsI GCATC 3 cut(s) 13, 147, 617
BpiI GAAGAC 2 cut(s) 159, 428
BpmI CTGGAG 2 cut(s) 182, 221
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 847
Bsa29I ATCGAT 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 975
BsaJI CCNNGG 3 cut(s) 213, 578, 846
BsaWI WCCGGW 1 cut(s) 960
Bse1I ACTGG 2 cut(s) 305, 804
BseAI TCCGGA 1 cut(s) 960
BseBI CCWGG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 213, 578, 846
BseGI GGATG 3 cut(s) 22, 337, 957
BseMII CTCAG 4 cut(s) 91, 402, 749, 986
BseNI ACTGG 2 cut(s) 305, 804
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 807
BseXI GCAGC 1 cut(s) 493
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 2 cut(s) 809, 845
BshVI ATCGAT 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 810
BsiSI CCGG 2 cut(s) 846, 961
BslFI GGGAC 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 975
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 2 cut(s) 809, 845
Bso31I GGTCTC 1 cut(s) 975
Bsp13I TCCGGA 1 cut(s) 960
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 19, 28, 399, 634
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 470, 806, 981
BspANI GGCC 2 cut(s) 809, 845
BspCNI CTCAG 4 cut(s) 90, 401, 748, 985
BspDI ATCGAT 1 cut(s) 11
BspEI TCCGGA 1 cut(s) 960
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 4 cut(s) 23, 36, 407, 629
BspTNI GGTCTC 1 cut(s) 975
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 2 cut(s) 305, 804
BssECI CCNNGG 3 cut(s) 213, 578, 846
BssMI GATC 4 cut(s) 19, 28, 399, 634
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 502, 586, 826
BstAUI TGTACA 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 6 cut(s) 77, 173, 388, 735, 915, 972
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 22, 337, 957
BstKTI GATC 4 cut(s) 22, 31, 402, 637
BstMAI GTCTC 1 cut(s) 975
BstMBI GATC 4 cut(s) 19, 28, 399, 634
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 2 cut(s) 467, 987
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 3 cut(s) 38, 91, 688
BstSCI CCNGG 2 cut(s) 577, 845
BstSFI CTRYAG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 2 cut(s) 159, 428
BstX2I RGATCY 2 cut(s) 28, 634
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 28, 634
BstZI CGGCCG 1 cut(s) 807
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 2 cut(s) 809, 845
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 3 cut(s) 22, 337, 957
BtsIMutI CAGTG 4 cut(s) 409, 498, 552, 831
Cac8I GCNNGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 830
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 4 cut(s) 195, 237, 708, 946
CviJI RGCY 8 cut(s) 149, 247, 266, 274, 619, 699, 809, 845
CviKI_1 RGCY 8 cut(s) 149, 247, 266, 274, 619, 699, 809, 845
CviQI GTAC 4 cut(s) 195, 237, 708, 946
DdeI CTNAG 6 cut(s) 77, 173, 388, 735, 915, 972
DpnI GATC 4 cut(s) 21, 30, 401, 636
DpnII GATC 4 cut(s) 19, 28, 399, 634
EaeI YGGCCR 1 cut(s) 807
EagI CGGCCG 1 cut(s) 807
EciI GGCGGA 1 cut(s) 485
EclXI CGGCCG 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 975
Eco32I GATATC 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 807
Eco57I CTGAAG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 577
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 213
FaqI GGGAC 1 cut(s) 595
FauI CCCGC 1 cut(s) 974
Fnu4HI GCNGC 2 cut(s) 507, 807
FokI GGATG 3 cut(s) 29, 344, 944
Fsp4HI GCNGC 2 cut(s) 507, 807
FspBI CTAG 2 cut(s) 143, 527
GluI GCNGC 2 cut(s) 507, 807
GsuI CTGGAG 2 cut(s) 182, 221
HaeIII GGCC 2 cut(s) 809, 845
HapII CCGG 2 cut(s) 846, 961
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 5 cut(s) 164, 209, 367, 764, 851
HpaII CCGG 2 cut(s) 846, 961
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 291, 553, 773
Hpy188I TCNGA 2 cut(s) 80, 391
Hpy188III TCNNGA 5 cut(s) 23, 200, 371, 612, 961
Hpy8I GTNNAC 3 cut(s) 291, 553, 773
Hpy99I CGWCG 2 cut(s) 157, 679
HpyAV CCTTC 5 cut(s) 199, 368, 712, 921, 929
HpyCH4III ACNGT 3 cut(s) 502, 586, 826
HpyCH4IV ACGT 3 cut(s) 113, 642, 879
HpyCH4V TGCA 6 cut(s) 4, 343, 591, 608, 682, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 987
HpyF3I CTNAG 6 cut(s) 77, 173, 388, 735, 915, 972
HpySE526I ACGT 3 cut(s) 113, 642, 879
Kpn2I TCCGGA 1 cut(s) 960
Kzo9I GATC 4 cut(s) 19, 28, 399, 634
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 3 cut(s) 13, 147, 617
MaeI CTAG 2 cut(s) 143, 527
MaeII ACGT 3 cut(s) 113, 642, 879
MaeIII GTNAC 4 cut(s) 114, 176, 832, 863
MalI GATC 4 cut(s) 21, 30, 401, 636
MboI GATC 4 cut(s) 19, 28, 399, 634
MboII GAAGA 4 cut(s) 159, 428, 554, 644
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 28, 634
MluCI AATT 6 cut(s) 354, 360, 530, 601, 748, 756
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 5 cut(s) 19, 51, 400, 403, 608
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 3 cut(s) 357, 885, 992
MslI CAYNNNNRTG 3 cut(s) 50, 656, 824
MspI CCGG 2 cut(s) 846, 961
MspR9I CCNGG 2 cut(s) 579, 847
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 467, 987
NciI CCSGG 1 cut(s) 847
NcoI CCATGG 1 cut(s) 213
NdeII GATC 4 cut(s) 19, 28, 399, 634
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 835
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 38, 91, 688
PaeI GCATGC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PctI GAATGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 4 cut(s) 209, 367, 764, 851
PflFI GACNNNGTC 2 cut(s) 826, 967
PkrI GCNGC 2 cut(s) 508, 808
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PsiI TTATAA 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 2 cut(s) 28, 634
PsyI GACNNNGTC 2 cut(s) 826, 967
RsaI GTAC 4 cut(s) 196, 238, 709, 947
RsaNI GTAC 4 cut(s) 195, 237, 708, 946
RseI CAYNNNNRTG 3 cut(s) 50, 656, 824
SaqAI TTAA 3 cut(s) 357, 885, 992
SatI GCNGC 2 cut(s) 507, 807
Sau3AI GATC 4 cut(s) 19, 28, 399, 634
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 579, 847
SfaNI GCATC 3 cut(s) 13, 147, 617
SfcI CTRYAG 1 cut(s) 449
SmiMI CAYNNNNRTG 3 cut(s) 50, 656, 824
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SphI GCATGC 1 cut(s) 91
Sse9I AATT 6 cut(s) 354, 360, 530, 601, 748, 756
SsiI CCGC 3 cut(s) 470, 806, 981
SspI AATATT 3 cut(s) 327, 628, 859
SspMI CTAG 2 cut(s) 143, 527
StyD4I CCNGG 2 cut(s) 577, 845
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 502, 586, 826
TaiI ACGT 3 cut(s) 116, 645, 882
TaqI TCGA 2 cut(s) 11, 155
TasI AATT 6 cut(s) 354, 360, 530, 601, 748, 756
TatI WGTACW 4 cut(s) 194, 236, 707, 945
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 4 cut(s) 209, 367, 764, 851
Tru1I TTAA 3 cut(s) 357, 885, 992
Tru9I TTAA 3 cut(s) 357, 885, 992
TscAI CASTG 4 cut(s) 409, 505, 552, 831
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 4 cut(s) 138, 180, 554, 946
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 4 cut(s) 409, 505, 552, 831
Tth111I GACNNNGTC 2 cut(s) 826, 967
XceI RCATGY 3 cut(s) 38, 91, 688
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 143, 527
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.