RLG00000023421

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
23374682 .. 23376949
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023421

Sequence Viewer

Length: 1461 bp
ATGGAGTCCTCTGGGTATCACAGTTTAGCCTGTAGTCCTCCTCCGGCGGAGCCAGAGGATTTCTACGTCATAGACGATATGCACATAGATAAATCAGATTGTGAGGGACCGAACGCCGACGATCACTGTGAGAGTGTTTATCCCATCCTCGATGAAATTCTTCCTCCGGCGGAGCCAGAGATAGACGATGTGTACATAGATAATTCAGATTGTGAGGAACCAAACTCCGACGACCACTGTGAGAGTGTTTTTCCCATCCCCGATGAAATCCCAGATTCTAAATTGGAGGAATTTTTTCTGCAAATGAAATCGAACTATGAACCTTGCTATAGAGCCACGCTGGATAAGGCTGCGCGAACCATCACATTCTCTCAACAACCACTCAAGTTGATGCCTGGTCCTGCTTTGAACAAATATGGCGTTCTTGAACTCAACACTTTCTTTGTGTACTTCCCCGAAAAACGAGCAACAAAGTTGAAAGCCGCATGGCCTGAGCACACGGAATGCTTGAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTCTATGCGTTACTCCATGAAAGACGAGTATCGAAGTTGCAAGAATCTTTGCCAATGCTCCAGTCTTCCCTAAGGAACTATGGCATTTCATATACTCTGGATAAGAATTCGATGGTATTGTCAGAAACCAGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGCCTGCAAACTTGCCTTATCAAAATTGGGAATCAAGTAGGTGGACTCTGCTCATTATCTGGGATCAAGGAGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACGATAACACTGTTGCTGCTGTGGGGGAAACCTCAGTAGTAATGATCAAGCAGTTGGTGGAAAACTGCATTCTTCATAATGCGTGTCCTGGGACCGCCGTCAAGAATTATAATTATTTATCAGGTGTGAAAATTATTGAGGACCCACATGTACAGCACACGGATATAGGAAATTCTGGGTCAGCGATGATGGTCATGCCTGAACTCACCTCTTTCTGTATGTTCTTGGATGGAGAACAAGCAACTCGGTTGGAAAAAGATTGGAAGTGTGTGGAAGCGTGCTTAAAGAAGCATGGCTTTTCTTGCGAACTGATTGCTGCGGTCGAGATCACTGAGGAGCAATTTGCTGAAGTGGTGTGGCCACATATTGAGCGCGGCTTAGAGGAAATTTCAACTCAACTGAAACCTCGTCCGACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTTGTGAGGCTTGTGCACTTTTCTTTGGCGAGGATGTGGCCATGCCTGAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.52

Weight (kDa)

4.65

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
Acc36I ACCTGC 1 cut(s) 1377
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 1403
AccII CGCG 2 cut(s) 355, 1317
AciI CCGC 7 cut(s) 47, 170, 483, 1038, 1262, 1317, 1369
AclWI GGATC 1 cut(s) 860
AcoI YGGCCR 2 cut(s) 1301, 1443
AcsI RAATTY 5 cut(s) 156, 290, 664, 1114, 1329
AcuI CTGAAG 2 cut(s) 936, 1311
AfaI GTAC 4 cut(s) 194, 449, 694, 1095
AfiI CCNNNNNNNGG 2 cut(s) 526, 1403
AflIII ACRYGT 1 cut(s) 1090
AgsI TTSAA 7 cut(s) 409, 428, 478, 511, 548, 737, 1335
AjnI CCWGG 2 cut(s) 394, 1030
AluBI AGCT 1 cut(s) 730
AluI AGCT 1 cut(s) 730
Alw21I GWGCWC 2 cut(s) 498, 1423
Alw44I GTGCAC 1 cut(s) 1419
AlwI GGATC 1 cut(s) 860
AoxI GGCC 5 cut(s) 488, 517, 1301, 1443, 1455
ApaLI GTGCAC 1 cut(s) 1419
ApeKI GCWGC 4 cut(s) 350, 727, 959, 1259
ApoI RAATTY 5 cut(s) 156, 290, 664, 1114, 1329
Asp700I GAANNNNTTC 3 cut(s) 159, 294, 888
Asp718I GGTACC 1 cut(s) 692
AspLEI GCGC 2 cut(s) 355, 1317
AspS9I GGNCC 5 cut(s) 107, 398, 518, 1035, 1084
AsuHPI GGTGA 1 cut(s) 1141
AvaII GGWCC 4 cut(s) 107, 398, 1035, 1084
AxyI CCTNAGG 2 cut(s) 629, 1452
BaeGI GKGCMC 1 cut(s) 1423
BalI TGGCCA 2 cut(s) 1303, 1445
BanI GGYRCC 1 cut(s) 692
BbsI GAAGAC 2 cut(s) 615, 881
Bbv12I GWGCWC 2 cut(s) 498, 1423
BbvI GCAGC 4 cut(s) 337, 739, 946, 1246
BccI CCATC 8 cut(s) 152, 263, 368, 530, 664, 873, 1126, 1166
BceAI ACGGC 1 cut(s) 1025
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 2 cut(s) 396, 1032
BclI TGATCA 1 cut(s) 987
BfaI CTAG 2 cut(s) 1374, 1459
BfmI CTRYAG 3 cut(s) 31, 328, 902
BfuAI ACCTGC 1 cut(s) 1377
BisI GCNGC 6 cut(s) 351, 483, 728, 960, 1260, 1318
BlsI GCNGC 6 cut(s) 352, 484, 729, 961, 1261, 1319
Bme1390I CCNGG 2 cut(s) 396, 1032
Bme18I GGWCC 4 cut(s) 107, 398, 1035, 1084
BmgT120I GGNCC 5 cut(s) 107, 398, 518, 1035, 1084
BmiI GGNNCC 8 cut(s) 51, 108, 174, 219, 694, 702, 1036, 1086
BmrFI CCNGG 2 cut(s) 396, 1032
BmsI GCATC 2 cut(s) 381, 773
BoxI GACNNNNGTC 2 cut(s) 1040, 1361
BpiI GAAGAC 2 cut(s) 615, 881
BpmI CTGGAG 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 696, 1031
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 1403
Bse1I ACTGG 1 cut(s) 619
Bse21I CCTNAGG 2 cut(s) 629, 1452
BseBI CCWGG 2 cut(s) 396, 1032
BseDI CCNNGG 2 cut(s) 696, 1031
BseGI GGATG 4 cut(s) 144, 255, 1177, 1444
BseLI CCNNNNNNNGG 2 cut(s) 526, 1403
BseMII CTCAG 4 cut(s) 483, 990, 1266, 1443
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 3 cut(s) 30, 875, 1292
BseSI GKGCMC 1 cut(s) 1423
BseXI GCAGC 4 cut(s) 337, 739, 946, 1246
Bsh1236I CGCG 2 cut(s) 355, 1317
Bsh1285I CGRYCG 1 cut(s) 1266
BshFI GGCC 5 cut(s) 490, 519, 1303, 1445, 1457
BshNI GGYRCC 1 cut(s) 692
BsiEI CGRYCG 1 cut(s) 1266
BsiHKAI GWGCWC 2 cut(s) 498, 1423
BsiSI CCGG 2 cut(s) 44, 167
BslFI GGGAC 2 cut(s) 120, 1048
BslI CCNNNNNNNGG 2 cut(s) 526, 1403
BsmFI GGGAC 2 cut(s) 120, 1048
BsmI GAATGC 3 cut(s) 509, 546, 1011
BsnI GGCC 5 cut(s) 490, 519, 1303, 1445, 1457
Bsp1286I GDGCHC 2 cut(s) 498, 1423
Bsp1407I TGTACA 2 cut(s) 192, 1093
Bsp143I GATC 4 cut(s) 121, 852, 987, 1269
BspACI CCGC 7 cut(s) 47, 170, 483, 1038, 1262, 1317, 1369
BspANI GGCC 5 cut(s) 490, 519, 1303, 1445, 1457
BspCNI CTCAG 4 cut(s) 484, 989, 1267, 1444
BspFNI CGCG 2 cut(s) 355, 1317
BspLI GGNNCC 8 cut(s) 51, 108, 174, 219, 694, 702, 1036, 1086
BspMI ACCTGC 1 cut(s) 1377
BspPI GGATC 1 cut(s) 860
BspT107I GGYRCC 1 cut(s) 692
BsrGI TGTACA 2 cut(s) 192, 1093
BsrI ACTGG 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 696, 1031
BssMI GATC 4 cut(s) 121, 852, 987, 1269
BssT1I CCWWGG 1 cut(s) 696
Bst2UI CCWGG 2 cut(s) 396, 1032
Bst4CI ACNGT 5 cut(s) 23, 128, 239, 872, 955
BstAUI TGTACA 2 cut(s) 192, 1093
BstC8I GCNNGC 4 cut(s) 557, 794, 1222, 1371
BstDEI CTNAG 6 cut(s) 492, 629, 976, 1275, 1321, 1452
BstF5I GGATG 4 cut(s) 144, 255, 1177, 1444
BstFNI CGCG 2 cut(s) 355, 1317
BstHHI GCGC 2 cut(s) 355, 1317
BstKTI GATC 4 cut(s) 124, 855, 990, 1272
BstMBI GATC 4 cut(s) 121, 852, 987, 1269
BstMCI CGRYCG 1 cut(s) 1266
BstMWI GCNNNNNNNGC 2 cut(s) 770, 1245
BstNI CCWGG 2 cut(s) 396, 1032
BstNSI RCATGY 1 cut(s) 1094
BstPAI GACNNNNGTC 2 cut(s) 1040, 1361
BstSCI CCNGG 2 cut(s) 394, 1030
BstSFI CTRYAG 3 cut(s) 31, 328, 902
BstSLI GKGCMC 1 cut(s) 1423
BstUI CGCG 2 cut(s) 355, 1317
BstV1I GCAGC 4 cut(s) 337, 739, 946, 1246
BstV2I GAAGAC 2 cut(s) 615, 881
Bsu36I CCTNAGG 2 cut(s) 629, 1452
BsuRI GGCC 5 cut(s) 490, 519, 1303, 1445, 1457
BtgZI GCGATG 1 cut(s) 1142
BtsCI GGATG 4 cut(s) 144, 255, 1177, 1444
BtsIMutI CAGTG 4 cut(s) 124, 235, 951, 1272
BveI ACCTGC 1 cut(s) 1377
Cac8I GCNNGC 4 cut(s) 557, 794, 1222, 1371
CfoI GCGC 2 cut(s) 355, 1317
Cfr13I GGNCC 5 cut(s) 107, 398, 518, 1035, 1084
Csp6I GTAC 4 cut(s) 193, 448, 693, 1094
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 8 cut(s) 486, 575, 755, 1091, 1138, 1235, 1366, 1447
CviQI GTAC 4 cut(s) 193, 448, 693, 1094
DdeI CTNAG 6 cut(s) 492, 629, 976, 1275, 1321, 1452
DpnI GATC 4 cut(s) 123, 854, 989, 1271
DpnII GATC 4 cut(s) 121, 852, 987, 1269
EaeI YGGCCR 2 cut(s) 1301, 1443
EciI GGCGGA 2 cut(s) 62, 185
Eco130I CCWWGG 1 cut(s) 696
Eco147I AGGCCT 1 cut(s) 1457
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 4 cut(s) 107, 398, 1035, 1084
Eco57I CTGAAG 2 cut(s) 936, 1311
Eco81I CCTNAGG 2 cut(s) 629, 1452
EcoO109I RGGNCCY 1 cut(s) 1084
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 394, 1030
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 8 cut(s) 489, 578, 758, 1094, 1141, 1238, 1369, 1450
FalI AAGNNNNNCTT 2 cut(s) 1223, 1255
FaqI GGGAC 2 cut(s) 120, 1048
FatI CATG 8 cut(s) 485, 574, 754, 1090, 1137, 1234, 1365, 1446
FauI CCCGC 1 cut(s) 1362
FbaI TGATCA 1 cut(s) 987
Fnu4HI GCNGC 6 cut(s) 351, 483, 728, 960, 1260, 1318
FokI GGATG 4 cut(s) 131, 242, 1184, 1451
Fsp4HI GCNGC 6 cut(s) 351, 483, 728, 960, 1260, 1318
FspBI CTAG 2 cut(s) 1374, 1459
GlaI GCGC 2 cut(s) 354, 1316
GluI GCNGC 6 cut(s) 351, 483, 728, 960, 1260, 1318
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 5 cut(s) 490, 519, 1303, 1445, 1457
HapII CCGG 2 cut(s) 44, 167
HhaI GCGC 2 cut(s) 355, 1317
Hin1II CATG 8 cut(s) 489, 578, 758, 1094, 1141, 1238, 1369, 1450
Hin6I GCGC 2 cut(s) 353, 1315
HinP1I GCGC 2 cut(s) 353, 1315
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HinfI GANTC 5 cut(s) 5, 275, 602, 820, 834
HpaII CCGG 2 cut(s) 44, 167
HphI GGTGA 1 cut(s) 1141
Hpy166II GTNNAC 6 cut(s) 193, 448, 747, 833, 875, 1421
Hpy188I TCNGA 6 cut(s) 97, 208, 229, 529, 682, 1356
Hpy188III TCNNGA 4 cut(s) 425, 656, 1045, 1267
Hpy8I GTNNAC 6 cut(s) 193, 448, 747, 833, 875, 1421
Hpy99I CGWCG 2 cut(s) 122, 233
HpyCH4III ACNGT 5 cut(s) 23, 128, 239, 872, 955
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 6 cut(s) 82, 301, 598, 796, 1011, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 770, 1245
HpyF3I CTNAG 6 cut(s) 492, 629, 976, 1275, 1321, 1452
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 8 cut(s) 489, 578, 758, 1094, 1141, 1238, 1369, 1450
HspAI GCGC 2 cut(s) 353, 1315
KpnI GGTACC 1 cut(s) 696
Ksp22I TGATCA 1 cut(s) 987
Kzo9I GATC 4 cut(s) 121, 852, 987, 1269
LmnI GCTCC 6 cut(s) 49, 172, 621, 700, 735, 1279
Lsp1109I GCAGC 4 cut(s) 337, 739, 946, 1246
LweI GCATC 2 cut(s) 381, 773
MaeI CTAG 2 cut(s) 1374, 1459
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 567
MalI GATC 4 cut(s) 123, 854, 989, 1271
MboI GATC 4 cut(s) 121, 852, 987, 1269
MboII GAAGA 4 cut(s) 152, 615, 881, 1007
MhlI GDGCHC 2 cut(s) 498, 1423
MlsI TGGCCA 2 cut(s) 1303, 1445
MluNI TGGCCA 2 cut(s) 1303, 1445
MlyI GAGTC 2 cut(s) 14, 828
MmeI TCCRAC 4 cut(s) 252, 507, 1173, 1379
Mox20I TGGCCA 2 cut(s) 1303, 1445
MroXI GAANNNNTTC 3 cut(s) 159, 294, 888
MscI TGGCCA 2 cut(s) 1303, 1445
MseI TTAA 2 cut(s) 942, 1226
Msp20I TGGCCA 2 cut(s) 1303, 1445
MspI CCGG 2 cut(s) 44, 167
MspR9I CCNGG 2 cut(s) 396, 1032
Mva1269I GAATGC 3 cut(s) 509, 546, 1011
MvaI CCWGG 2 cut(s) 396, 1032
MvnI CGCG 2 cut(s) 355, 1317
MwoI GCNNNNNNNGC 2 cut(s) 770, 1245
NdeII GATC 4 cut(s) 121, 852, 987, 1269
NlaIII CATG 8 cut(s) 489, 578, 758, 1094, 1141, 1238, 1369, 1450
NlaIV GGNNCC 8 cut(s) 51, 108, 174, 219, 694, 702, 1036, 1086
NspI RCATGY 1 cut(s) 1094
PceI AGGCCT 1 cut(s) 1457
PciI ACATGT 1 cut(s) 1090
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 563
PctI GAATGC 3 cut(s) 509, 546, 1011
PdmI GAANNNNTTC 3 cut(s) 159, 294, 888
PfeI GAWTC 3 cut(s) 275, 602, 820
PflMI CCANNNNNTGG 1 cut(s) 1403
PkrI GCNGC 6 cut(s) 352, 484, 729, 961, 1261, 1319
PleI GAGTC 2 cut(s) 13, 828
PpsI GAGTC 2 cut(s) 13, 828
PpuMI RGGWCCY 1 cut(s) 1084
PscI ACATGT 1 cut(s) 1090
PshAI GACNNNNGTC 2 cut(s) 1040, 1361
PsiI TTATAA 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1084
Psp6I CCWGG 2 cut(s) 394, 1030
PspGI CCWGG 2 cut(s) 394, 1030
PspN4I GGNNCC 8 cut(s) 51, 108, 174, 219, 694, 702, 1036, 1086
PspPI GGNCC 5 cut(s) 107, 398, 518, 1035, 1084
PspPPI RGGWCCY 1 cut(s) 1084
RsaI GTAC 4 cut(s) 194, 449, 694, 1095
RsaNI GTAC 4 cut(s) 193, 448, 693, 1094
SaqAI TTAA 2 cut(s) 942, 1226
SatI GCNGC 6 cut(s) 351, 483, 728, 960, 1260, 1318
Sau3AI GATC 4 cut(s) 121, 852, 987, 1269
Sau96I GGNCC 5 cut(s) 107, 398, 518, 1035, 1084
SchI GAGTC 2 cut(s) 14, 828
ScrFI CCNGG 2 cut(s) 396, 1032
SduI GDGCHC 2 cut(s) 498, 1423
SfaNI GCATC 2 cut(s) 381, 773
SfcI CTRYAG 3 cut(s) 31, 328, 902
SinI GGWCC 4 cut(s) 107, 398, 1035, 1084
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SseBI AGGCCT 1 cut(s) 1457
SsiI CCGC 7 cut(s) 47, 170, 483, 1038, 1262, 1317, 1369
SspMI CTAG 2 cut(s) 1374, 1459
StuI AGGCCT 1 cut(s) 1457
StyD4I CCNGG 2 cut(s) 394, 1030
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 5 cut(s) 23, 128, 239, 872, 955
TaiI ACGT 1 cut(s) 69
TaqI TCGA 5 cut(s) 150, 311, 590, 668, 1266
TaqII GACCGA 1 cut(s) 124
TatI WGTACW 3 cut(s) 192, 447, 1093
TauI GCSGC 2 cut(s) 485, 1320
TfiI GAWTC 3 cut(s) 275, 602, 820
Tru1I TTAA 2 cut(s) 942, 1226
Tru9I TTAA 2 cut(s) 942, 1226
TscAI CASTG 4 cut(s) 131, 242, 958, 1279
TseI GCWGC 4 cut(s) 350, 727, 959, 1259
TspDTI ATGAA 7 cut(s) 168, 279, 320, 333, 591, 636, 1007
TspGWI ACGGA 2 cut(s) 515, 1118
TspRI CASTG 4 cut(s) 131, 242, 958, 1279
Van91I CCANNNNNTGG 1 cut(s) 1403
VneI GTGCAC 1 cut(s) 1419
VpaK11BI GGWCC 4 cut(s) 107, 398, 1035, 1084
XapI RAATTY 5 cut(s) 156, 290, 664, 1114, 1329
XceI RCATGY 1 cut(s) 1094
XmnI GAANNNNTTC 3 cut(s) 159, 294, 888
XspI CTAG 2 cut(s) 1374, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.