Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

26729006 .. 26729491

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGTCCTCTGGGTATCACAGTTTAGCCTGTAGTCCTCCTCCGGCGGAGCCAGAGATTTTCTACGTCATAGACGATATGCTCATAGATAAATCAGATTGTGAGGGACCGAACGCCGACGACTACTGTGAGAGTGTTTATCCCATCCTCGATGAAATTATTCCTCGGGCGGAGCCAGAGATAGACGATGTGTACATAGATAATTCAGATTGTGAGGGACCAAACGCCGACAACCACTGTGAGAGTGTTTTTCCCATCCCCGATGAAATCCCAGATTCTAAATTGGAGGAATTTTTTCTGCAAATGGAATTTTTTCTGGATAAGGCTGCGCGAACCATCACATTCTCTCAACAACCACTCAAGTTGATGCCTGGTCCTGCTTTGAACAAATATGGCGTTCTTGAACTCAACGCTTTCTTTGTGTACTTCCCCAAAAAAAGAGCAACAAAGTTGAAAGCCGCATGGCCTGAGATTGAATTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

161

Amino Acids

18.23

Weight (kDa)

4.16

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	47, 170, 459
AcsI	RAATTY	2 cut(s)	290, 308
AfaI	GTAC	2 cut(s)	194, 425
AgsI	TTSAA	4 cut(s)	385, 404, 454, 476
AjnI	CCWGG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	290, 308
Asp700I	GAANNNNTTC	3 cut(s)	159, 294, 312
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	107, 218, 374
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	3 cut(s)	107, 218, 374
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	152, 263, 344
BciT130I	CCWGG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	327, 459
BlsI	GCNGC	2 cut(s)	328, 460
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	3 cut(s)	107, 218, 374
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	107, 218, 374
BmiI	GGNNCC	4 cut(s)	51, 108, 174, 219
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	144, 255
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	120, 231
BsmFI	GGGAC	2 cut(s)	120, 231
BsnI	GGCC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	192
BspACI	CCGC	3 cut(s)	47, 170, 459
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	51, 108, 174, 219
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	23, 128, 239
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	144, 255
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	144, 255
BtsIMutI	CAGTG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	107, 218, 374
Csp6I	GTAC	2 cut(s)	193, 424
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	1 cut(s)	462
CviJI	RGCY	6 cut(s)	29, 52, 175, 326, 458, 466
CviKI_1	RGCY	6 cut(s)	29, 52, 175, 326, 458, 466
CviQI	GTAC	2 cut(s)	193, 424
DdeI	CTNAG	1 cut(s)	468
EciI	GGCGGA	2 cut(s)	62, 185
Eco47I	GGWCC	3 cut(s)	107, 218, 374
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	465
FaiI	YATR	6 cut(s)	71, 80, 86, 197, 393, 463
FaqI	GGGAC	2 cut(s)	120, 231
FatI	CATG	1 cut(s)	461
Fnu4HI	GCNGC	2 cut(s)	327, 459
FokI	GGATG	2 cut(s)	131, 242
Fsp4HI	GCNGC	2 cut(s)	327, 459
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	327, 459
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	5, 275
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	193, 424
Hpy188I	TCNGA	2 cut(s)	97, 208
Hpy188III	TCNNGA	2 cut(s)	317, 401
Hpy8I	GTNNAC	2 cut(s)	193, 424
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	23, 128, 239
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	49, 172
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	66
MluCI	AATT	6 cut(s)	156, 202, 281, 290, 308, 476
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	19, 48, 51, 97, 158, 174, 208, 280
MroXI	GAANNNNTTC	3 cut(s)	159, 294, 312
MseI	TTAA	2 cut(s)	479, 484
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	331
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	4 cut(s)	51, 108, 174, 219
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	3 cut(s)	159, 294, 312
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	328, 460
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	51, 108, 174, 219
PspPI	GGNCC	3 cut(s)	107, 218, 374
RsaI	GTAC	2 cut(s)	194, 425
RsaNI	GTAC	2 cut(s)	193, 424
SaqAI	TTAA	2 cut(s)	479, 484
SatI	GCNGC	2 cut(s)	327, 459
Sau96I	GGNCC	3 cut(s)	107, 218, 374
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	107, 218, 374
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	156, 202, 281, 290, 308, 476
SsiI	CCGC	3 cut(s)	47, 170, 459
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	23, 128, 239
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	6 cut(s)	156, 202, 281, 290, 308, 476
TatI	WGTACW	2 cut(s)	192, 423
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	479, 484
Tru9I	TTAA	2 cut(s)	479, 484
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	168, 279
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	107, 218, 374
XapI	RAATTY	2 cut(s)	290, 308
XmnI	GAANNNNTTC	3 cut(s)	159, 294, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.