Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

25979910 .. 25988130

Gene Structure 8221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTATCAATCGATGGATGATCTTGATGATCCACATGCCAAGCACACGGAATGCTTGAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTCTATGCGTTACTCCATGAAAGACGAGTCCCCATTGCTGATGCTATAAGGAACTATGGTATTTCATATATTCTGGATAAGAATTGGATGGTATTGTCAGCAACCGGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACGATAACACTGTTGCTGCTGTAGGGGAAACCTCAGTAGTAATGATCAAGCAGTTGGTGGAAAACTGCATTCTTCATAATGAGTGTCTTGGGACTGCCGCAAAAAATTATAATTATTTATCAGAAGGTGTCAAAAGTATTGAGGACCCACATGTACAGCACATGGATATAGGAAATTCTGGGTCAGCGATGATGACCATGGTCATGCCTGAATTCACCTCTTTCTATATGTTCTTTGATGGAGAACAAGCAACTCAGTTGGAAAAAGATTGGAAGTGTGTGGAAGAGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGTCGAGTGTTACATGATAGTCTCCAAAACTACAAATGCTGGGGATCCAGATATCACTGACAAGATTTGGGATTTCCTTAAACTTTTGTCAATTGATGTTGAGCCTTCTAAGACAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACAAGGATCACTGAGGAGAAATTTGCTGAAGTGGTGTGGCCACATATTGAGCGTGGCTTAGAGGAAATTTCAACTCAACTGAACTGCGAGTACATTATTAGTCTGAACTTTATTACCGTCTTGGGACTCGGAGAACTAGGGGTGTTCAGAAGGTTTGTGGAACAGTGTTTTTGTTTCAGACCTCGTCCTACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTTGTGAGGCTCGTGCACTTTTCTTTGGCGAGGATGTGGCCATGCTTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

384

Amino Acids

43.67

Weight (kDa)

4.96

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	1071
Acc65I	GGTACC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	1097
AciI	CCGC	3 cut(s)	474, 704, 1063
AclWI	GGATC	4 cut(s)	23, 743, 756, 875
AcoI	YGGCCR	3 cut(s)	835, 899, 1137
AcsI	RAATTY	4 cut(s)	550, 587, 881, 927
AcuI	CTGAAG	2 cut(s)	369, 909
AfaI	GTAC	4 cut(s)	217, 531, 828, 953
AfiI	CCNNNNNNNGG	2 cut(s)	73, 1097
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	58, 95, 260, 933
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	1117
Alw26I	GTCTC	1 cut(s)	730
Alw44I	GTGCAC	1 cut(s)	1113
AlwI	GGATC	4 cut(s)	23, 743, 756, 875
AoxI	GGCC	5 cut(s)	64, 835, 899, 1137, 1149
ApaLI	GTGCAC	1 cut(s)	1113
ApeKI	GCWGC	3 cut(s)	250, 392, 701
ApoI	RAATTY	4 cut(s)	550, 587, 881, 927
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	65, 520
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	1117
BalI	TGGCCA	2 cut(s)	901, 1139
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	1110
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	1117
BbvI	GCAGC	3 cut(s)	262, 379, 688
BccI	CCATC	5 cut(s)	7, 77, 187, 306, 608
BceAI	ACGGC	1 cut(s)	822
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	3 cut(s)	998, 1068, 1153
BfmI	CTRYAG	2 cut(s)	335, 396
BfuAI	ACCTGC	1 cut(s)	1071
BisI	GCNGC	4 cut(s)	251, 393, 474, 702
BlsI	GCNGC	4 cut(s)	252, 394, 475, 703
BmcAI	AGTACT	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	65, 520
BmiI	GGNNCC	4 cut(s)	217, 225, 522, 750
BmsI	GCATC	2 cut(s)	136, 296
BoxI	GACNNNNGTC	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	219, 573
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 1097
Bse3DI	GCAATG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	219, 573
BseGI	GGATG	4 cut(s)	22, 198, 855, 1138
BseLI	CCNNNNNNNGG	2 cut(s)	73, 1097
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	3 cut(s)	423, 644, 864
BseRI	GAGGAG	1 cut(s)	890
BseSI	GKGCMC	1 cut(s)	1117
BseXI	GCAGC	3 cut(s)	262, 379, 688
BseYI	CCCAGC	1 cut(s)	743
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	5 cut(s)	66, 837, 901, 1139, 1151
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	1117
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	119, 481, 999
BslI	CCNNNNNNNGG	2 cut(s)	73, 1097
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	3 cut(s)	119, 481, 999
BsmI	GAATGC	3 cut(s)	56, 93, 444
BsnI	GGCC	5 cut(s)	66, 837, 901, 1139, 1151
Bsp1286I	GDGCHC	1 cut(s)	1117
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	5 cut(s)	19, 28, 420, 748, 867
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	3 cut(s)	474, 704, 1063
BspANI	GGCC	5 cut(s)	66, 837, 901, 1139, 1151
BspCNI	CTCAG	3 cut(s)	422, 643, 865
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	217, 225, 522, 750
BspMI	ACCTGC	1 cut(s)	1071
BspPI	GGATC	4 cut(s)	23, 743, 756, 875
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	219, 573
BssMI	GATC	5 cut(s)	19, 28, 420, 748, 867
BssSI	CACGAG	1 cut(s)	1110
BssT1I	CCWWGG	2 cut(s)	219, 573
Bst2BI	CACGAG	1 cut(s)	1110
Bst4CI	ACNGT	4 cut(s)	305, 388, 979, 1026
Bst6I	CTCTTC	1 cut(s)	654
BstAUI	TGTACA	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	104, 1065
BstDEI	CTNAG	5 cut(s)	409, 630, 813, 873, 919
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	22, 198, 855, 1138
BstKTI	GATC	5 cut(s)	22, 31, 423, 751, 870
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	5 cut(s)	19, 28, 420, 748, 867
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	1 cut(s)	687
BstNSI	RCATGY	2 cut(s)	38, 530
BstPAI	GACNNNNGTC	1 cut(s)	575
BstSFI	CTRYAG	2 cut(s)	335, 396
BstSLI	GKGCMC	1 cut(s)	1117
BstV1I	GCAGC	3 cut(s)	262, 379, 688
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	5 cut(s)	66, 837, 901, 1139, 1151
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	4 cut(s)	22, 198, 855, 1138
BtsIMutI	CAGTG	4 cut(s)	384, 759, 870, 1031
BveI	ACCTGC	1 cut(s)	1071
Cac8I	GCNNGC	2 cut(s)	104, 1065
Cfr13I	GGNCC	2 cut(s)	65, 520
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	216, 530, 827, 952
CviQI	GTAC	4 cut(s)	216, 530, 827, 952
DdeI	CTNAG	5 cut(s)	409, 630, 813, 873, 919
DpnI	GATC	5 cut(s)	21, 30, 422, 750, 869
DpnII	GATC	5 cut(s)	19, 28, 420, 748, 867
EaeI	YGGCCR	3 cut(s)	835, 899, 1137
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	219, 573
Eco147I	AGGCCT	1 cut(s)	1151
Eco32I	GATATC	2 cut(s)	232, 757
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	369, 909
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRI	GAATTC	1 cut(s)	587
EcoRV	GATATC	2 cut(s)	232, 757
EcoT14I	CCWWGG	2 cut(s)	219, 573
ErhI	CCWWGG	2 cut(s)	219, 573
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	3 cut(s)	119, 481, 999
FauI	CCCGC	1 cut(s)	1056
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	251, 393, 474, 702
FokI	GGATG	4 cut(s)	29, 205, 842, 1145
Fsp4HI	GCNGC	4 cut(s)	251, 393, 474, 702
FspBI	CTAG	3 cut(s)	998, 1068, 1153
GluI	GCNGC	4 cut(s)	251, 393, 474, 702
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	5 cut(s)	66, 837, 901, 1139, 1151
HapII	CCGG	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	132, 987
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	3 cut(s)	270, 308, 1115
Hpy188I	TCNGA	6 cut(s)	76, 499, 966, 992, 1010, 1040
Hpy188III	TCNNGA	4 cut(s)	23, 179, 752, 859
Hpy8I	GTNNAC	3 cut(s)	270, 308, 1115
HpyAV	CCTTC	3 cut(s)	494, 819, 1005
HpyCH4III	ACNGT	4 cut(s)	305, 388, 979, 1026
HpyCH4V	TGCA	4 cut(s)	444, 690, 844, 1115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	687
HpyF3I	CTNAG	5 cut(s)	409, 630, 813, 873, 919
KpnI	GGTACC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	5 cut(s)	19, 28, 420, 748, 867
LmnI	GCTCC	2 cut(s)	223, 258
Lsp1109I	GCAGC	3 cut(s)	262, 379, 688
LweI	GCATC	2 cut(s)	136, 296
MaeI	CTAG	3 cut(s)	998, 1068, 1153
MaeIII	GTNAC	2 cut(s)	114, 713
MalI	GATC	5 cut(s)	21, 30, 422, 750, 869
MboI	GATC	5 cut(s)	19, 28, 420, 748, 867
MboII	GAAGA	3 cut(s)	314, 440, 671
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	1 cut(s)	1117
MlsI	TGGCCA	2 cut(s)	901, 1139
MluCI	AATT	8 cut(s)	187, 481, 487, 550, 587, 795, 881, 927
MluNI	TGGCCA	2 cut(s)	901, 1139
MlyI	GAGTC	2 cut(s)	141, 981
MmeI	TCCRAC	2 cut(s)	54, 615
Mox20I	TGGCCA	2 cut(s)	901, 1139
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	2 cut(s)	901, 1139
MseI	TTAA	3 cut(s)	375, 668, 783
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	2 cut(s)	901, 1139
MspI	CCGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	795
Mva1269I	GAATGC	3 cut(s)	56, 93, 444
MwoI	GCNNNNNNNGC	1 cut(s)	687
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	5 cut(s)	19, 28, 420, 748, 867
NlaIV	GGNNCC	4 cut(s)	217, 225, 522, 750
NspI	RCATGY	2 cut(s)	38, 530
PceI	AGGCCT	1 cut(s)	1151
PciI	ACATGT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	3 cut(s)	56, 93, 444
PdmI	GAANNNNTTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	1044
PflMI	CCANNNNNTGG	1 cut(s)	1097
PkrI	GCNGC	4 cut(s)	252, 394, 475, 703
PleI	GAGTC	2 cut(s)	140, 981
PpsI	GAGTC	2 cut(s)	140, 981
PpuMI	RGGWCCY	1 cut(s)	520
PscI	ACATGT	1 cut(s)	526
PshAI	GACNNNNGTC	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	743
PspN4I	GGNNCC	4 cut(s)	217, 225, 522, 750
PspPI	GGNCC	2 cut(s)	65, 520
PspPPI	RGGWCCY	1 cut(s)	520
PsrI	GAACNNNNNNTAC	2 cut(s)	935, 967
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	1044
RsaI	GTAC	4 cut(s)	217, 531, 828, 953
RsaNI	GTAC	4 cut(s)	216, 530, 827, 952
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	375, 668, 783
SatI	GCNGC	4 cut(s)	251, 393, 474, 702
Sau3AI	GATC	5 cut(s)	19, 28, 420, 748, 867
Sau96I	GGNCC	2 cut(s)	65, 520
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	2 cut(s)	141, 981
SduI	GDGCHC	1 cut(s)	1117
SetI	ASST	9 cut(s)	217, 255, 410, 505, 596, 1016, 1045, 1085, 1096
SfaNI	GCATC	2 cut(s)	136, 296
SfcI	CTRYAG	2 cut(s)	335, 396
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	1145
SmoI	CTYRAG	1 cut(s)	1145
Sse9I	AATT	8 cut(s)	187, 481, 487, 550, 587, 795, 881, 927
SseBI	AGGCCT	1 cut(s)	1151
SsiI	CCGC	3 cut(s)	474, 704, 1063
SspMI	CTAG	3 cut(s)	998, 1068, 1153
StuI	AGGCCT	1 cut(s)	1151
StyI	CCWWGG	2 cut(s)	219, 573
TaaI	ACNGT	4 cut(s)	305, 388, 979, 1026
TaqI	TCGA	2 cut(s)	11, 708
TasI	AATT	8 cut(s)	187, 481, 487, 550, 587, 795, 881, 927
TatI	WGTACW	3 cut(s)	529, 826, 951
TauI	GCSGC	1 cut(s)	476
Tru1I	TTAA	3 cut(s)	375, 668, 783
Tru9I	TTAA	3 cut(s)	375, 668, 783
TscAI	CASTG	4 cut(s)	391, 766, 877, 1031
TseI	GCWGC	3 cut(s)	250, 392, 701
TspDTI	ATGAA	4 cut(s)	138, 159, 440, 844
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	4 cut(s)	391, 766, 877, 1031
Tth111I	GACNNNGTC	1 cut(s)	1044
Van91I	CCANNNNNTGG	1 cut(s)	1097
VneI	GTGCAC	1 cut(s)	1113
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	4 cut(s)	550, 587, 881, 927
XceI	RCATGY	2 cut(s)	38, 530
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	3 cut(s)	998, 1068, 1153
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.