Rw0G009410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00370
OG0001762
Physical Location & Seq
Reverse (-)
67 .. 2001
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009410.1

Sequence Viewer

Length: 339 bp
ATGGATATGGCCGTCGATGATGACTTGTTGGTGAATCCTAAGCCGATGATGGAGGAGCCACAGGTCGACTACCGAGTTTATCCGATCCCCGAAACAGTCCCAGACTCCCAGGAGAACACTTTTACTGCTGTGACTGCTGTGGAGAATACAGTTGAAAGAATTTCATCGCTCAAGTCAGTTGTGGGAGACTGCATCACCAAAAATTTGTGTCCTGCAACCTCTATCAGGAAGTTTGCAAACGATTTTGGAATGCATCAATCGATGGATGATATATCTTCAGGATCCACATGCCAAGCACATGGAGATGGTGAGGTCTGCCCCTTTTTTTCTCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

4.32

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AclWI GGATC 3 cut(s) 79, 276, 289
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 2 cut(s) 159, 202
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 3 cut(s) 79, 276, 289
AoxI GGCC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 159, 202
AsuHPI GGTGA 3 cut(s) 43, 187, 320
BamHI GGATCC 1 cut(s) 281
BccI CCATC 3 cut(s) 43, 256, 299
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 57, 283
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 201, 262
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 260
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 84, 281
BspANI GGCC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 57, 283
BspPI GGATC 3 cut(s) 79, 276, 289
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 84, 281
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 97, 151
BstDEI CTNAG 2 cut(s) 39, 330
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 87, 284
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 84, 281
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 260
CviAII CATG 2 cut(s) 288, 299
CviJI RGCY 3 cut(s) 11, 43, 58
CviKI_1 RGCY 3 cut(s) 11, 43, 58
DdeI CTNAG 2 cut(s) 39, 330
DpnI GATC 2 cut(s) 86, 283
DpnII GATC 2 cut(s) 84, 281
EaeI YGGCCR 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 255
FaeI CATG 2 cut(s) 291, 302
FaiI YATR 4 cut(s) 8, 272, 289, 300
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 287, 298
FblI GTMKAC 1 cut(s) 66
FokI GGATG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 2 cut(s) 291, 302
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 34, 104
HphI GGTGA 3 cut(s) 43, 187, 320
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 84, 333
Hpy188III TCNNGA 2 cut(s) 226, 279
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 97, 151
HpyCH4V TGCA 4 cut(s) 192, 215, 236, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 39, 330
Hsp92II CATG 2 cut(s) 291, 302
Kzo9I GATC 2 cut(s) 84, 281
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 47, 95, 114, 122, 211, 225, 264
LweI GCATC 2 cut(s) 201, 262
MaeIII GTNAC 1 cut(s) 130
MalI GATC 2 cut(s) 86, 283
MboI GATC 2 cut(s) 84, 281
MboII GAAGA 1 cut(s) 267
MflI RGATCY 1 cut(s) 281
MluCI AATT 2 cut(s) 159, 202
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 46, 229, 304
Mph1103I ATGCAT 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 84, 281
NlaIII CATG 2 cut(s) 291, 302
NlaIV GGNNCC 2 cut(s) 57, 283
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 291
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 57, 283
PsuI RGATCY 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 84, 281
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 110
SetI ASST 3 cut(s) 66, 221, 315
SfaNI GCATC 2 cut(s) 201, 262
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 159, 202
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 97, 151
TaqI TCGA 3 cut(s) 15, 66, 260
TasI AATT 2 cut(s) 159, 202
TfiI GAWTC 1 cut(s) 34
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 2 cut(s) 159, 202
XceI RCATGY 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.