Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

46118885 .. 46121375

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGATAGGAGATCAGCAGGGGGGGCTTTGCACAAAATTTGGGGTCAAGAAGGAGAAGGATTCCATGGCATTCACAACAACGAGATGTACTAATGAGCCAGATATCATTGACAAGGCTTTGCAGCTACTTGAACTTCTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTATGCAAACTTTCGTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGTGGGTATTGTTGATTTTTATCAAACAAATCTAACTTGTCAGTCTGCTTATCAAATATGTTTCTGGAAGCGTACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

113

Amino Acids

12.47

Weight (kDa)

4.67

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	2 cut(s)	91, 334
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
AlwI	GGATC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	13, 252
Bsp19I	CCATGG	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	254
BspPI	GGATC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	13, 252
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	16, 255
BstMBI	GATC	2 cut(s)	13, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	90, 333
CviAII	CATG	2 cut(s)	67, 152
CviJI	RGCY	4 cut(s)	28, 100, 119, 127
CviKI_1	RGCY	4 cut(s)	28, 100, 119, 127
CviQI	GTAC	2 cut(s)	90, 333
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	2 cut(s)	15, 254
DpnII	GATC	2 cut(s)	13, 252
Eco130I	CCWWGG	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 155
FaiI	YATR	4 cut(s)	68, 153, 194, 319
FatI	CATG	2 cut(s)	66, 151
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	70, 155
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	62, 220
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	3 cut(s)	49, 224, 325
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	46, 52, 221
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	33, 124, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	70, 155
Kzo9I	GATC	2 cut(s)	13, 252
LpnPI	CCDG	5 cut(s)	5, 114, 152, 171, 310
Lsp1109I	GCAGC	1 cut(s)	136
MalI	GATC	2 cut(s)	15, 254
MboI	GATC	2 cut(s)	13, 252
MluCI	AATT	3 cut(s)	38, 207, 213
MnlI	CCTC	1 cut(s)	253
MseI	TTAA	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	25
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	13, 252
NlaIII	CATG	2 cut(s)	70, 155
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	62, 220
PkrI	GCNGC	1 cut(s)	126
RsaI	GTAC	2 cut(s)	91, 334
RsaNI	GTAC	2 cut(s)	90, 333
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	13, 252
SetI	ASST	3 cut(s)	129, 232, 264
Sse9I	AATT	3 cut(s)	38, 207, 213
SspI	AATATT	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	337
TasI	AATT	3 cut(s)	38, 207, 213
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	62, 220
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	124
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.