Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

46105414 .. 46118777

Gene Structure 13364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGAATGTCTTCGCCACTCCCTACAGGTAAGTGTCCGAATTGCTTGTTACTGAGTGGATGCAGGCCATGCCTGCCTGTCGAGCGTGTTGTGCGGCAACGGCGCGAGCCATCGGTTGAGCAGAAAACCACCAATGTTCTTTTCTGCGGGCCACATTTCTCTAGCGTGTTGTGCGGCAACGGCGCGAGCCATCAGTTGAGCAGAAAACCATCAATGAGAAGGATTCCATGGCATTCACGCACAACAACGAGATGTACTAAGGAGCCAGATATCATTGACAAGGCTCTGCAGCTACTTGAACTTTTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTATGGAAACTCGCCTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCACTCCCTACAGGCAGTCGCCGAAACGGCGGAATGTAATGTATTTCTCAAGTGGTTTGGCCAGGAGTTGAACACGGAAATGGCAAGAGTCATGAACTGTGATGTCAGGACTAGTCCAAATCTTATTACTGCTGCGGTCCGCATGAACAAATGGATGAATTCAGCAAGTTTGTGCAATGTTGCTTTGATTGGAGGCGTCAACCGACTTGTACAATGGGAGTGTAGACGTAAACCCCCGCAGCTCAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

236

Amino Acids

26.45

Weight (kDa)

8.84

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	682
AccII	CGCG	2 cut(s)	105, 185
AciI	CCGC	7 cut(s)	94, 147, 174, 488, 593, 598, 695
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	2 cut(s)	256, 669
AgsI	TTSAA	2 cut(s)	299, 529
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	292, 700
AluI	AGCT	2 cut(s)	292, 700
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	65, 149, 517
ApeKI	GCWGC	3 cut(s)	289, 590, 697
ApoI	RAATTY	1 cut(s)	616
Asp700I	GAANNNNTTC	2 cut(s)	10, 453
AspLEI	GCGC	2 cut(s)	105, 185
AspS9I	GGNCC	2 cut(s)	149, 595
AvaII	GGWCC	1 cut(s)	595
BalI	TGGCCA	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	3, 446
BbvI	GCAGC	2 cut(s)	301, 577
BccI	CCATC	5 cut(s)	118, 198, 217, 344, 438
BceAI	ACGGC	3 cut(s)	116, 196, 501
BciT130I	CCWGG	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	162, 570
BfmI	CTRYAG	3 cut(s)	24, 287, 467
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	5 cut(s)	95, 175, 290, 591, 698
BlsI	GCNGC	5 cut(s)	96, 176, 291, 592, 699
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	149, 595
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	2 cut(s)	3, 446
BpuEI	CTTGAG	2 cut(s)	491, 686
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	65, 355, 618
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	44, 420
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	301, 577
Bsh1236I	CGCG	2 cut(s)	105, 185
BshFI	GGCC	3 cut(s)	67, 151, 519
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	67, 151, 519
Bsp1407I	TGTACA	1 cut(s)	667
Bsp143I	GATC	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	7 cut(s)	94, 147, 174, 488, 593, 598, 695
BspANI	GGCC	3 cut(s)	67, 151, 519
BspCNI	CTCAG	2 cut(s)	45, 419
BspFNI	CGCG	2 cut(s)	105, 185
BspHI	TCATGA	2 cut(s)	549, 707
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	667
BstC8I	GCNNGC	5 cut(s)	65, 74, 107, 149, 187
BstDEI	CTNAG	3 cut(s)	53, 258, 406
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	65, 355, 618
BstFNI	CGCG	2 cut(s)	105, 185
BstHHI	GCGC	2 cut(s)	105, 185
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	8 cut(s)	69, 73, 82, 91, 100, 171, 180, 485
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	3 cut(s)	24, 287, 467
BstUI	CGCG	2 cut(s)	105, 185
BstV1I	GCAGC	2 cut(s)	301, 577
BstV2I	GAAGAC	2 cut(s)	3, 446
BsuRI	GGCC	3 cut(s)	67, 151, 519
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	65, 355, 618
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	5 cut(s)	65, 74, 107, 149, 187
CciI	TCATGA	2 cut(s)	549, 707
CfoI	GCGC	2 cut(s)	105, 185
Cfr13I	GGNCC	2 cut(s)	149, 595
CpoI	CGGWCCG	1 cut(s)	595
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	255, 668
CspI	CGGWCCG	1 cut(s)	595
CviAII	CATG	6 cut(s)	69, 228, 317, 550, 601, 708
CviJI	RGCY	9 cut(s)	67, 109, 151, 189, 265, 284, 292, 519, 700
CviKI_1	RGCY	9 cut(s)	67, 109, 151, 189, 265, 284, 292, 519, 700
CviQI	GTAC	2 cut(s)	255, 668
DdeI	CTNAG	3 cut(s)	53, 258, 406
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	6 cut(s)	72, 231, 320, 553, 604, 711
FaiI	YATR	8 cut(s)	70, 229, 318, 359, 440, 551, 602, 709
FatI	CATG	6 cut(s)	68, 227, 316, 549, 600, 707
FauI	CCCGC	2 cut(s)	140, 702
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	5 cut(s)	95, 175, 290, 591, 698
FokI	GGATG	3 cut(s)	72, 362, 625
Fsp4HI	GCNGC	5 cut(s)	95, 175, 290, 591, 698
FspBI	CTAG	2 cut(s)	162, 570
GlaI	GCGC	2 cut(s)	104, 184
GluI	GCNGC	5 cut(s)	95, 175, 290, 591, 698
HaeIII	GGCC	3 cut(s)	67, 151, 519
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	2 cut(s)	105, 185
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	6 cut(s)	72, 231, 320, 553, 604, 711
Hin6I	GCGC	2 cut(s)	103, 183
HinP1I	GCGC	2 cut(s)	103, 183
HincII	GTYRAC	2 cut(s)	309, 658
HindII	GTYRAC	2 cut(s)	309, 658
HinfI	GANTC	3 cut(s)	223, 385, 546
Hpy166II	GTNNAC	4 cut(s)	309, 658, 683, 689
Hpy188I	TCNGA	2 cut(s)	39, 409
Hpy188III	TCNNGA	4 cut(s)	389, 550, 565, 708
Hpy8I	GTNNAC	4 cut(s)	309, 658, 683, 689
HpyAV	CCTTC	2 cut(s)	213, 386
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	3 cut(s)	63, 289, 633
HpyF10VI	GCNNNNNNNGC	8 cut(s)	69, 73, 82, 91, 100, 171, 180, 485
HpyF3I	CTNAG	3 cut(s)	53, 258, 406
HpySE526I	ACGT	1 cut(s)	685
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	6 cut(s)	72, 231, 320, 553, 604, 711
HspAI	GCGC	2 cut(s)	103, 183
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	301, 577
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	162, 570
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	3, 446
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	4 cut(s)	40, 372, 378, 616
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	555
MnlI	CCTC	3 cut(s)	418, 421, 644
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	10, 453
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	105, 185
MwoI	GCNNNNNNNGC	8 cut(s)	69, 73, 82, 91, 100, 171, 180, 485
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	6 cut(s)	72, 231, 320, 553, 604, 711
NlaIV	GGNNCC	1 cut(s)	264
PagI	TCATGA	2 cut(s)	549, 707
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	2 cut(s)	10, 453
PfeI	GAWTC	2 cut(s)	223, 385
PkrI	GCNGC	5 cut(s)	96, 176, 291, 592, 699
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	149, 595
PstI	CTGCAG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	256, 669
RsaNI	GTAC	2 cut(s)	255, 668
RseI	CAYNNNNRTG	1 cut(s)	536
Rsr2I	CGGWCCG	1 cut(s)	595
RsrII	CGGWCCG	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	95, 175, 290, 591, 698
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	149, 595
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	1 cut(s)	521
SetI	ASST	6 cut(s)	31, 294, 397, 438, 688, 702
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	3 cut(s)	24, 287, 467
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	506, 701
SmoI	CTYRAG	2 cut(s)	506, 701
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	4 cut(s)	40, 372, 378, 616
SsiI	CCGC	7 cut(s)	94, 147, 174, 488, 593, 598, 695
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	162, 570
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	40, 372, 378, 616
TatI	WGTACW	2 cut(s)	254, 667
TauI	GCSGC	2 cut(s)	97, 177
TfiI	GAWTC	2 cut(s)	223, 385
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	3 cut(s)	289, 590, 697
TspDTI	ATGAA	3 cut(s)	566, 617, 629
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	10, 453
XspI	CTAG	2 cut(s)	162, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.