Rmu_sc0001576.1_g000004

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
Physical Location & Seq
Forward (+)
7401 .. 12983
5583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001576.1_g000004.1.cds

Sequence Viewer

Length: 1644 bp
atgaaaagaaaaacaacggagacgactgatcacggtttagcctgtagtcctcctccgcctcttttgtacgtcatagacgatatgcacatggataaatcagattgtgagggaccaaacgccgacgaccactgtgagagtgtttttcccatccccgatgaaatcccagattctaaattggaggaattttttctgcgaatgaaatcgaactatgaaccttgctatagagccacattggataaggctgcgcgaaccatcacattctctcaacaaccactcaagttgatgcctggtcctgctttgaacaaatatggcgtgcttgaactcaacactttctttgtgtacttccccgaaaaccgagcaacaaagttggaagccgcatggcctgaggttgaattaaccttagatgcctactccctttcatgcgatctgaatctggccaagtgttgcatgcaagtctcaacaaccccatcgcttgaggatccatgtatgattgaaaaggctaggcatctccttgaactgttgtccacaactcttgttccgccatatatggcgttagaaattttccaagaagttaggcaacaggaaaccatcaacataggatttcagcagggtgggatttgctcaaaatttgggatcaagaaggtagatgttgggcagactcttatcatttacgttttctttggagcattctctgtagtagtgatgctgggccttttaatttgcgctgaaaacacttttactgctgtgactgctgtgggtagctcagttgaaagaatttctcagctgaaggctgttgtggaagactgtataaccaagaatctgtgtccttcgacctctattaggaggtttgaaacggaagttgtaatgtatcaatcgatggatgatcttgatgatccacatgccaagcacacggaatgcttgaagtctggccctttgtcggacaaagatggaatgcttgaagtctgctcgctatatgcattactccatgaaagacaagaaggtgtgaaaagtattgaggacccacatgtacagcacatggatataggaaattctgggtcagcgatgatggtcatgcctgaactctcctctttctgtatgttctttgatggagaacaagcaactcggttggaaaaagattggaagtgtgtggaagcgtgcttaaagaagcatggcatttcttgcaaactgattgctgcggtcgagtgttacatgatagtctccaaaacaacaaatgctggggatccagatatcactgacaagatttgggatttccttaaacttctgtcaattgatgttgagccttctaaggcaatagaagtactgaatggccgtctgcattttgacttcatcccgacagggtatagatatggtggtgggctctgttcagaatttaggatcactgaggagcaatttgctgaagtggtgtggccacgtattgagcgcggcttagagccaaacgttattactgtcttgggacctggagaactaggggtgttcagaaggtttgtggaacagtgttttcgtttcagacctcgtccgacttgtgtcatgcgggctaaaataaaaggcaggttcgtgccaccttttggtcgtgaggctcgtgcatttttctttggcgaggatgtggccatgcttgaggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

61.51

Weight (kDa)

5.09

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1560
AccB7I CCANNNNNTGG 1 cut(s) 1586
AccII CGCG 2 cut(s) 247, 1443
AciI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
AclI AACGTT 1 cut(s) 1458
AclWI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
AcoI YGGCCR 4 cut(s) 435, 1327, 1427, 1626
AcsI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
AcuI CTGAAG 2 cut(s) 806, 1437
AfaI GTAC 4 cut(s) 68, 341, 1029, 1320
AfiI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
AflIII ACRYGT 1 cut(s) 1024
AgsI TTSAA 9 cut(s) 301, 320, 392, 494, 515, 770, 851, 922, 959
AjnI CCWGG 2 cut(s) 286, 1477
AluBI AGCT 2 cut(s) 762, 784
AluI AGCT 2 cut(s) 762, 784
Alw26I GTCTC 3 cut(s) 14, 460, 1222
AlwI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
AoxI GGCC 8 cut(s) 380, 435, 709, 928, 1327, 1427, 1626, 1638
ApeKI GCWGC 2 cut(s) 242, 1193
ApoI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 3 cut(s) 247, 725, 1443
AspS9I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
AvaII GGWCC 4 cut(s) 110, 290, 1018, 1475
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 3 cut(s) 437, 1429, 1628
BamHI GGATCC 2 cut(s) 478, 1240
BanII GRGCYC 1 cut(s) 1380
BauI CACGAG 1 cut(s) 1599
BbsI GAAGAC 1 cut(s) 807
BbvI GCAGC 2 cut(s) 229, 1180
BccI CCATC 8 cut(s) 155, 260, 475, 596, 871, 941, 1060, 1100
BceAI ACGGC 1 cut(s) 1314
BciT130I CCWGG 2 cut(s) 288, 1479
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 14, 460, 1222
BfaI CTAG 3 cut(s) 501, 1487, 1642
BfmI CTRYAG 3 cut(s) 43, 220, 693
BfuAI ACCTGC 1 cut(s) 1560
BisI GCNGC 4 cut(s) 243, 375, 1194, 1444
BlsI GCNGC 4 cut(s) 244, 376, 1195, 1445
BmcAI AGTACT 1 cut(s) 1320
Bme1390I CCNGG 2 cut(s) 288, 1479
Bme18I GGWCC 4 cut(s) 110, 290, 1018, 1475
BmgT120I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
BmiI GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
BmrFI CCNGG 2 cut(s) 288, 1479
BmsI GCATC 4 cut(s) 273, 394, 514, 693
BoxI GACNNNNGTC 1 cut(s) 1544
BpiI GAAGAC 1 cut(s) 807
BpmI CTGGAG 1 cut(s) 1500
BpuEI CTTGAG 2 cut(s) 260, 494
Bsa29I ATCGAT 1 cut(s) 875
BsaAI YACGTR 1 cut(s) 1433
BsaBI GATNNNNATC 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 840, 937, 1586
Bse21I CCTNAGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 2 cut(s) 288, 1479
BseCI ATCGAT 1 cut(s) 875
BseGI GGATG 4 cut(s) 147, 886, 1347, 1627
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
BseMII CTCAG 4 cut(s) 375, 777, 794, 1392
BseRI GAGGAG 3 cut(s) 42, 1075, 1418
BseXI GCAGC 2 cut(s) 229, 1180
BseYI CCCAGC 2 cut(s) 706, 1235
Bsh1236I CGCG 2 cut(s) 247, 1443
Bsh1285I CGRYCG 1 cut(s) 1200
BshFI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BshVI ATCGAT 1 cut(s) 875
BsiEI CGRYCG 1 cut(s) 1200
BslFI GGGAC 2 cut(s) 123, 1488
BslI CCNNNNNNNGG 3 cut(s) 840, 937, 1586
BsmAI GTCTC 3 cut(s) 14, 460, 1222
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 123, 1488
BsmI GAATGC 3 cut(s) 686, 920, 957
BsnI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
Bsp1286I GDGCHC 1 cut(s) 1380
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BspACI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
BspANI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BspCNI CTCAG 4 cut(s) 376, 776, 793, 1393
BspDI ATCGAT 1 cut(s) 875
BspFNI CGCG 2 cut(s) 247, 1443
BspLI GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
BspMI ACCTGC 1 cut(s) 1560
BspPI GGATC 7 cut(s) 473, 486, 641, 887, 1235, 1248, 1403
BsrGI TGTACA 1 cut(s) 1027
BssMI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BssSI CACGAG 1 cut(s) 1599
Bst2BI CACGAG 1 cut(s) 1599
Bst2UI CCWGG 2 cut(s) 288, 1479
Bst4CI ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
BstAPI GCANNNNNTGC 1 cut(s) 1179
BstAUI TGTACA 1 cut(s) 1027
BstBAI YACGTR 1 cut(s) 1433
BstC8I GCNNGC 5 cut(s) 314, 449, 968, 1156, 1554
BstDEI CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
BstENI CCTNNNNNAGG 1 cut(s) 838
BstF5I GGATG 4 cut(s) 147, 886, 1347, 1627
BstFNI CGCG 2 cut(s) 247, 1443
BstHHI GCGC 3 cut(s) 247, 725, 1443
BstKTI GATC 8 cut(s) 31, 427, 481, 636, 886, 895, 1243, 1398
BstMAI GTCTC 3 cut(s) 14, 460, 1222
BstMBI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
BstMCI CGRYCG 1 cut(s) 1200
BstMWI GCNNNNNNNGC 2 cut(s) 749, 1179
BstNI CCWGG 2 cut(s) 288, 1479
BstNSI RCATGY 3 cut(s) 451, 902, 1028
BstPAI GACNNNNGTC 1 cut(s) 1544
BstSCI CCNGG 2 cut(s) 286, 1477
BstSFI CTRYAG 3 cut(s) 43, 220, 693
BstUI CGCG 2 cut(s) 247, 1443
BstV1I GCAGC 2 cut(s) 229, 1180
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 478, 1240
BstYI RGATCY 2 cut(s) 478, 1240
Bsu15I ATCGAT 1 cut(s) 875
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
BsuTUI ATCGAT 1 cut(s) 875
BtgZI GCGATG 2 cut(s) 453, 1076
BtsCI GGATG 4 cut(s) 147, 886, 1347, 1627
BtsIMutI CAGTG 4 cut(s) 127, 1251, 1398, 1520
BveI ACCTGC 1 cut(s) 1560
Cac8I GCNNGC 5 cut(s) 314, 449, 968, 1156, 1554
CfoI GCGC 3 cut(s) 247, 725, 1443
Cfr13I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
ClaI ATCGAT 1 cut(s) 875
Csp6I GTAC 4 cut(s) 67, 340, 1028, 1319
CspCI CAANNNNNGTGG 4 cut(s) 261, 296, 514, 549
CviQI GTAC 4 cut(s) 67, 340, 1028, 1319
DdeI CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
DpnI GATC 8 cut(s) 30, 426, 480, 635, 885, 894, 1242, 1397
DpnII GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
EaeI YGGCCR 4 cut(s) 435, 1327, 1427, 1626
EciI GGCGGA 2 cut(s) 45, 528
Eco147I AGGCCT 1 cut(s) 1640
Eco24I GRGCYC 1 cut(s) 1380
Eco32I GATATC 1 cut(s) 1249
Eco47I GGWCC 4 cut(s) 110, 290, 1018, 1475
Eco57I CTGAAG 2 cut(s) 806, 1437
Eco81I CCTNAGG 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 838
EcoO109I RGGNCCY 2 cut(s) 1018, 1475
EcoRII CCWGG 2 cut(s) 286, 1477
EcoRV GATATC 1 cut(s) 1249
EcoT22I ATGCAT 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 1380
Esp3I CGTCTC 1 cut(s) 14
FaqI GGGAC 2 cut(s) 123, 1488
FauI CCCGC 1 cut(s) 1545
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 243, 375, 1194, 1444
FokI GGATG 4 cut(s) 134, 893, 1334, 1634
FriOI GRGCYC 1 cut(s) 1380
Fsp4HI GCNGC 4 cut(s) 243, 375, 1194, 1444
FspBI CTAG 3 cut(s) 501, 1487, 1642
GlaI GCGC 3 cut(s) 246, 724, 1442
GluI GCNGC 4 cut(s) 243, 375, 1194, 1444
GsaI CCCAGC 2 cut(s) 710, 1239
GsuI CTGGAG 1 cut(s) 1500
HaeIII GGCC 8 cut(s) 382, 437, 711, 930, 1329, 1429, 1628, 1640
HhaI GCGC 3 cut(s) 247, 725, 1443
Hin6I GCGC 3 cut(s) 245, 723, 1441
HinP1I GCGC 3 cut(s) 245, 723, 1441
HinfI GANTC 4 cut(s) 167, 430, 658, 817
Hpy166II GTNNAC 2 cut(s) 340, 525
Hpy188I TCNGA 7 cut(s) 100, 429, 940, 1387, 1499, 1529, 1539
Hpy188III TCNNGA 5 cut(s) 637, 887, 1244, 1351, 1592
Hpy8I GTNNAC 2 cut(s) 340, 525
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 6 cut(s) 634, 781, 837, 992, 1311, 1494
HpyCH4III ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
HpyCH4IV ACGT 4 cut(s) 69, 672, 1432, 1458
HpyCH4V TGCA 7 cut(s) 85, 447, 451, 977, 1182, 1336, 1604
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 1179
HpyF3I CTNAG 7 cut(s) 384, 400, 763, 780, 1305, 1401, 1447
HpySE526I ACGT 4 cut(s) 69, 672, 1432, 1458
HspAI GCGC 3 cut(s) 245, 723, 1441
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
LmnI GCTCC 2 cut(s) 683, 1405
Lsp1109I GCAGC 2 cut(s) 229, 1180
LweI GCATC 4 cut(s) 273, 394, 514, 693
MaeI CTAG 3 cut(s) 501, 1487, 1642
MaeII ACGT 4 cut(s) 69, 672, 1432, 1458
MaeIII GTNAC 2 cut(s) 745, 1205
MalI GATC 8 cut(s) 30, 426, 480, 635, 885, 894, 1242, 1397
MboI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
MboII GAAGA 1 cut(s) 812
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 2 cut(s) 478, 1240
MhlI GDGCHC 1 cut(s) 1380
MlsI TGGCCA 3 cut(s) 437, 1429, 1628
MluNI TGGCCA 3 cut(s) 437, 1429, 1628
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 4 cut(s) 348, 918, 1107, 1562
Mox20I TGGCCA 3 cut(s) 437, 1429, 1628
Mph1103I ATGCAT 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 3 cut(s) 437, 1429, 1628
MseI TTAA 4 cut(s) 395, 716, 1160, 1275
Msp20I TGGCCA 3 cut(s) 437, 1429, 1628
MspA1I CMGCKG 1 cut(s) 784
MspR9I CCNGG 2 cut(s) 288, 1479
MunI CAATTG 1 cut(s) 1287
Mva1269I GAATGC 3 cut(s) 686, 920, 957
MvaI CCWGG 2 cut(s) 288, 1479
MvnI CGCG 2 cut(s) 247, 1443
MwoI GCNNNNNNNGC 2 cut(s) 749, 1179
NdeII GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
NlaIV GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
NmuCI GTSAC 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 979
NspI RCATGY 3 cut(s) 451, 902, 1028
PaeI GCATGC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 1640
PciI ACATGT 1 cut(s) 1024
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 1597
PctI GAATGC 3 cut(s) 686, 920, 957
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 167, 430, 817
PflFI GACNNNGTC 1 cut(s) 1533
PflMI CCANNNNNTGG 1 cut(s) 1586
PkrI GCNGC 4 cut(s) 244, 376, 1195, 1445
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Ppu21I YACGTR 1 cut(s) 1433
PpuMI RGGWCCY 2 cut(s) 1018, 1475
PscI ACATGT 1 cut(s) 1024
PshAI GACNNNNGTC 1 cut(s) 1544
Psp1406I AACGTT 1 cut(s) 1458
Psp5II RGGWCCY 2 cut(s) 1018, 1475
Psp6I CCWGG 2 cut(s) 286, 1477
PspFI CCCAGC 2 cut(s) 706, 1235
PspGI CCWGG 2 cut(s) 286, 1477
PspN4I GGNNCC 5 cut(s) 111, 480, 1020, 1242, 1476
PspPI GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
PspPPI RGGWCCY 2 cut(s) 1018, 1475
PsuI RGATCY 2 cut(s) 478, 1240
PsyI GACNNNGTC 1 cut(s) 1533
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 4 cut(s) 68, 341, 1029, 1320
RsaNI GTAC 4 cut(s) 67, 340, 1028, 1319
SaqAI TTAA 4 cut(s) 395, 716, 1160, 1275
SatI GCNGC 4 cut(s) 243, 375, 1194, 1444
Sau3AI GATC 8 cut(s) 28, 424, 478, 633, 883, 892, 1240, 1395
Sau96I GGNCC 6 cut(s) 110, 290, 709, 929, 1018, 1475
ScaI AGTACT 1 cut(s) 1320
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 288, 1479
SduI GDGCHC 1 cut(s) 1380
SfaNI GCATC 4 cut(s) 273, 394, 514, 693
SfcI CTRYAG 3 cut(s) 43, 220, 693
SinI GGWCC 4 cut(s) 110, 290, 1018, 1475
SmlI CTYRAG 3 cut(s) 275, 473, 1634
SmoI CTYRAG 3 cut(s) 275, 473, 1634
SphI GCATGC 1 cut(s) 451
SseBI AGGCCT 1 cut(s) 1640
SsiI CCGC 6 cut(s) 56, 375, 539, 1196, 1443, 1552
SspMI CTAG 3 cut(s) 501, 1487, 1642
StuI AGGCCT 1 cut(s) 1640
StyD4I CCNGG 2 cut(s) 286, 1477
TaaI ACNGT 6 cut(s) 35, 131, 519, 806, 1468, 1515
TaiI ACGT 4 cut(s) 72, 675, 1435, 1461
TaqI TCGA 4 cut(s) 203, 830, 875, 1200
TatI WGTACW 3 cut(s) 339, 1027, 1318
TauI GCSGC 2 cut(s) 377, 1446
TfiI GAWTC 3 cut(s) 167, 430, 817
Tru1I TTAA 4 cut(s) 395, 716, 1160, 1275
Tru9I TTAA 4 cut(s) 395, 716, 1160, 1275
TscAI CASTG 4 cut(s) 134, 1258, 1405, 1520
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 2 cut(s) 242, 1193
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 7 cut(s) 17, 171, 212, 225, 408, 1002, 1336
TspGWI ACGGA 3 cut(s) 32, 869, 926
TspRI CASTG 4 cut(s) 134, 1258, 1405, 1520
Tth111I GACNNNGTC 1 cut(s) 1533
Van91I CCANNNNNTGG 1 cut(s) 1586
VpaK11BI GGWCC 4 cut(s) 110, 290, 1018, 1475
XagI CCTNNNNNAGG 1 cut(s) 838
XapI RAATTY 6 cut(s) 182, 558, 626, 774, 1048, 1388
XceI RCATGY 3 cut(s) 451, 902, 1028
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 3 cut(s) 501, 1487, 1642
ZrmI AGTACT 1 cut(s) 1320
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.