Rorug03G0190200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001762
Physical Location & Seq
Reverse (-)
16657760 .. 16660230
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0190200.1

Sequence Viewer

Length: 1101 bp
ATGGAACTAGCTAAGTCAGCTCAAAGGCTCTTCCTTCCTCTCTTTCTGATCTTTTGTTTCATTTCAGGAGAAGGAGGGGCGCGGCAGCTAGTTTCAGCAACTGTCCAGAGCAATTGGCGACCAACAAAGCTATTTGTTTTCGGAGACTCCTTTGCTGCCACAGGCAACAATGACAATGACTTTTTGAACATCCCTTGGAATTATCCTTATGGAAAGACCTTTCCAGGAAAAGCAACTGGCCGTTACTCCGATGGTCGTGTCCTCACTGATTTCATTGCCAAGTTCATAGGAGTGAAGTCTCCGATCTCATACAAATTAAAAAATAAAGTTGCAGGCGATTATTTGAAATACGGGATGAATTTCGCATATGCAGACACGGGTGTGACCAGTCTCTCATACTTTTACCCAAACTTGACCACCCAAATAGACTACTTTCAGCGGATTATCGAGGGAGCAAGTTCTGTATACAACACCACAGACCTCCACTCCTCTGTGGCCCTGGTTACCGTTTCCGGTGATGACTATGAGTCTTACATTTTCAGCATGGAGGGTCAGACTCCGGCCCATCCATTACAGAGTTGGAAATCCTTTAGCACATCAATAGTAAATCACGTAACTACTAGTTTAAAACGTATCCATGACTTGGGAGTGAAGAAAATACTCGTGACTGCCCTGGAACCTATGGGATGTCGCCCTACTGGTACGGCCGTATTCTCATACAAAAAGTGCAATGAAACCCGGAACTCACTTTCCAGGTCTCACAACCTCCTCTTGCAGGAAGCCGTGGCCAAGTTGAACAACCAAACCAAGAGTTCGTCCTTTGTCATTCTTGATCTTTATACGTCCTTCATGTCCGCATTCAAAAACAAAGGAAGCATAAAGTTTAAGGACAGATTAAAGCCATGTTGTGCTAGTGTAACACCCGGATATCCATATGGGTGTGGCACTATGAGTGATATTCCGGGGGAAGATACGTATACCATTTGCGAGAGTGAAGCTGCTGCATTCTTTTGGGACTATGCTCACCCTACACAACAAGGATGGTTTTCTGTGTATTCAAACCTCAAAGCTACACTTAAGAAGCTCTACCAAAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

366

Amino Acids

40.83

Weight (kDa)

9.02

Isoelectric Point (pI)

24.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 347 3.1e-22 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 2 cut(s) 465, 977
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 82, 439, 855
AcoI YGGCCR 3 cut(s) 238, 705, 786
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 2 cut(s) 643, 775
AflII CTTAAG 1 cut(s) 1076
AgsI TTSAA 5 cut(s) 187, 346, 796, 862, 1059
AhdI GACNNNNNGTC 1 cut(s) 526
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 4 cut(s) 223, 498, 672, 752
AleI CACNNNNGTG 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 734, 766
AluBI AGCT 7 cut(s) 11, 20, 88, 130, 998, 1070, 1084
AluI AGCT 7 cut(s) 11, 20, 88, 130, 998, 1070, 1084
Alw26I GTCTC 4 cut(s) 138, 303, 395, 762
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 5 cut(s) 238, 495, 561, 705, 786
ApeKI GCWGC 4 cut(s) 85, 155, 998, 1001
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 496, 562
AsuC2I CCSGG 3 cut(s) 739, 924, 963
AsuHPI GGTGA 2 cut(s) 527, 1016
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BalI TGGCCA 1 cut(s) 788
BauI CACGAG 1 cut(s) 662
BbvI GCAGC 4 cut(s) 97, 142, 985, 988
BccI CCATC 3 cut(s) 245, 573, 1035
BceAI ACGGC 4 cut(s) 225, 692, 720, 767
BciT130I CCWGG 4 cut(s) 225, 500, 674, 754
BciVI GTATCC 1 cut(s) 644
BcnI CCSGG 3 cut(s) 739, 924, 963
BcoDI GTCTC 4 cut(s) 138, 303, 395, 762
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 4 cut(s) 8, 89, 621, 912
BfrI CTTAAG 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 644
BisI GCNGC 5 cut(s) 83, 86, 156, 999, 1002
BlsI GCNGC 5 cut(s) 84, 87, 157, 1000, 1003
Bme1390I CCNGG 7 cut(s) 225, 500, 674, 739, 754, 924, 963
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 496, 562
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 7 cut(s) 225, 500, 674, 739, 754, 924, 963
BpuMI CCSGG 3 cut(s) 739, 924, 963
BsaAI YACGTR 2 cut(s) 613, 975
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 5 cut(s) 194, 498, 672, 783, 962
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 643, 775
Bse1I ACTGG 3 cut(s) 241, 387, 703
Bse3DI GCAATG 2 cut(s) 273, 736
BseBI CCWGG 4 cut(s) 225, 500, 674, 754
BseDI CCNNGG 5 cut(s) 194, 498, 672, 783, 962
BseGI GGATG 5 cut(s) 189, 360, 565, 692, 1046
BseLI CCNNNNNNNGG 2 cut(s) 643, 775
BseMI GCAATG 2 cut(s) 273, 736
BseNI ACTGG 3 cut(s) 241, 387, 703
BseRI GAGGAG 2 cut(s) 478, 758
BseX3I CGGCCG 1 cut(s) 705
BseXI GCAGC 4 cut(s) 97, 142, 985, 988
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 5 cut(s) 240, 497, 563, 707, 788
BsiEI CGRYCG 1 cut(s) 708
BsiSI CCGG 5 cut(s) 513, 560, 739, 924, 962
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 2 cut(s) 643, 775
BsmAI GTCTC 4 cut(s) 138, 303, 395, 762
BsmFI GGGAC 1 cut(s) 1028
BsmI GAATGC 2 cut(s) 857, 1004
BsnI GGCC 5 cut(s) 240, 497, 563, 707, 788
Bso31I GGTCTC 1 cut(s) 762
Bsp143I GATC 3 cut(s) 48, 303, 832
BspACI CCGC 3 cut(s) 82, 439, 855
BspANI GGCC 5 cut(s) 240, 497, 563, 707, 788
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 678
BspQI GCTCTTC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 1076
BspTNI GGTCTC 1 cut(s) 762
BsrDI GCAATG 2 cut(s) 273, 736
BsrI ACTGG 3 cut(s) 241, 387, 703
BssECI CCNNGG 5 cut(s) 194, 498, 672, 783, 962
BssMI GATC 3 cut(s) 48, 303, 832
BssNAI GTATAC 2 cut(s) 466, 978
BssSI CACGAG 1 cut(s) 662
BssT1I CCWWGG 1 cut(s) 194
Bst1107I GTATAC 2 cut(s) 466, 978
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 4 cut(s) 225, 500, 674, 754
Bst4CI ACNGT 2 cut(s) 103, 508
Bst6I CTCTTC 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 1076
BstBAI YACGTR 2 cut(s) 613, 975
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 783
BstEII GGTNACC 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 5 cut(s) 189, 360, 565, 692, 1046
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 3 cut(s) 51, 306, 835
BstMAI GTCTC 4 cut(s) 138, 303, 395, 762
BstMBI GATC 3 cut(s) 48, 303, 832
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 4 cut(s) 225, 500, 674, 754
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 7 cut(s) 223, 498, 672, 737, 752, 922, 961
BstSNI TACGTA 1 cut(s) 975
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 4 cut(s) 97, 142, 985, 988
BstZ17I GTATAC 2 cut(s) 466, 978
BstZI CGGCCG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 5 cut(s) 240, 497, 563, 707, 788
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 5 cut(s) 189, 360, 565, 692, 1046
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 496, 562
Csp6I GTAC 1 cut(s) 702
CviAII CATG 4 cut(s) 544, 638, 850, 903
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 50, 305, 834
DpnII GATC 3 cut(s) 48, 303, 832
DraI TTTAAA 1 cut(s) 627
DriI GACNNNNNGTC 1 cut(s) 526
EaeI YGGCCR 3 cut(s) 238, 705, 786
EagI CGGCCG 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 705
Eco105I TACGTA 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 762
Eco32I GATATC 1 cut(s) 929
Eco52I CGGCCG 1 cut(s) 705
Eco91I GGTNACC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 4 cut(s) 223, 498, 672, 752
EcoRV GATATC 1 cut(s) 929
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 547, 641, 853, 906
FalI AAGNNNNNCTT 2 cut(s) 1059, 1091
FaqI GGGAC 1 cut(s) 1028
FatI CATG 4 cut(s) 543, 637, 849, 902
FauNDI CATATG 2 cut(s) 367, 934
FblI GTMKAC 2 cut(s) 465, 977
Fnu4HI GCNGC 5 cut(s) 83, 86, 156, 999, 1002
FokI GGATG 5 cut(s) 176, 367, 552, 699, 1053
Fsp4HI GCNGC 5 cut(s) 83, 86, 156, 999, 1002
FspBI CTAG 4 cut(s) 8, 89, 621, 912
GlaI GCGC 1 cut(s) 81
GluI GCNGC 5 cut(s) 83, 86, 156, 999, 1002
HaeIII GGCC 5 cut(s) 240, 497, 563, 707, 788
HapII CCGG 5 cut(s) 513, 560, 739, 924, 962
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 547, 641, 853, 906
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 3 cut(s) 146, 527, 556
HpaII CCGG 5 cut(s) 513, 560, 739, 924, 962
HphI GGTGA 2 cut(s) 527, 1016
Hpy166II GTNNAC 2 cut(s) 466, 978
Hpy188I TCNGA 5 cut(s) 48, 143, 250, 303, 555
Hpy188III TCNNGA 4 cut(s) 66, 106, 664, 830
Hpy8I GTNNAC 2 cut(s) 466, 978
HpyAV CCTTC 3 cut(s) 44, 65, 856
HpyCH4III ACNGT 2 cut(s) 103, 508
HpyCH4IV ACGT 4 cut(s) 612, 631, 842, 974
HpyCH4V TGCA 5 cut(s) 332, 371, 729, 775, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 4 cut(s) 612, 631, 842, 974
Hsp92II CATG 4 cut(s) 547, 641, 853, 906
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 3 cut(s) 48, 303, 832
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 4 cut(s) 97, 142, 985, 988
MaeI CTAG 4 cut(s) 8, 89, 621, 912
MaeII ACGT 4 cut(s) 612, 631, 842, 974
MaeIII GTNAC 6 cut(s) 242, 382, 502, 613, 664, 916
MalI GATC 3 cut(s) 50, 305, 834
MboI GATC 3 cut(s) 48, 303, 832
MboII GAAGA 3 cut(s) 22, 664, 980
MfeI CAATTG 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 4 cut(s) 112, 199, 314, 358
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 3 cut(s) 140, 536, 550
MmeI TCCRAC 1 cut(s) 560
Mox20I TGGCCA 1 cut(s) 788
MscI TGGCCA 1 cut(s) 788
MseI TTAA 5 cut(s) 317, 626, 885, 896, 1077
MslI CAYNNNNRTG 3 cut(s) 290, 380, 937
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 439
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 5 cut(s) 513, 560, 739, 924, 962
MspR9I CCNGG 7 cut(s) 225, 500, 674, 739, 754, 924, 963
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 2 cut(s) 857, 1004
MvaI CCWGG 4 cut(s) 225, 500, 674, 754
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 3 cut(s) 739, 924, 963
NdeI CATATG 2 cut(s) 367, 934
NdeII GATC 3 cut(s) 48, 303, 832
NlaIII CATG 4 cut(s) 547, 641, 853, 906
NlaIV GGNNCC 1 cut(s) 678
NmuCI GTSAC 2 cut(s) 382, 664
OliI CACNNNNGTG 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 35
PctI GAATGC 2 cut(s) 857, 1004
PflMI CCANNNNNTGG 1 cut(s) 643
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 5 cut(s) 84, 87, 157, 1000, 1003
PleI GAGTC 3 cut(s) 140, 535, 550
PpsI GAGTC 3 cut(s) 140, 535, 550
Ppu21I YACGTR 2 cut(s) 613, 975
Psp6I CCWGG 4 cut(s) 223, 498, 672, 752
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 4 cut(s) 223, 498, 672, 752
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 2 cut(s) 496, 562
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
RseI CAYNNNNRTG 3 cut(s) 290, 380, 937
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 317, 626, 885, 896, 1077
SatI GCNGC 5 cut(s) 83, 86, 156, 999, 1002
Sau3AI GATC 3 cut(s) 48, 303, 832
Sau96I GGNCC 2 cut(s) 496, 562
SchI GAGTC 3 cut(s) 140, 536, 550
ScrFI CCNGG 7 cut(s) 225, 500, 674, 739, 754, 924, 963
SmiMI CAYNNNNRTG 3 cut(s) 290, 380, 937
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
SnaBI TACGTA 1 cut(s) 975
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 4 cut(s) 112, 199, 314, 358
SsiI CCGC 3 cut(s) 82, 439, 855
SspMI CTAG 4 cut(s) 8, 89, 621, 912
StyD4I CCNGG 7 cut(s) 223, 498, 672, 737, 752, 922, 961
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 103, 508
TaiI ACGT 4 cut(s) 615, 634, 845, 977
TaqI TCGA 1 cut(s) 447
TasI AATT 4 cut(s) 112, 199, 314, 358
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 5 cut(s) 317, 626, 885, 896, 1077
Tru9I TTAA 5 cut(s) 317, 626, 885, 896, 1077
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 2 cut(s) 382, 664
TseI GCWGC 4 cut(s) 85, 155, 998, 1001
Tsp45I GTSAC 2 cut(s) 382, 664
TspDTI ATGAA 6 cut(s) 49, 262, 274, 371, 747, 838
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 643
Vha464I CTTAAG 1 cut(s) 1076
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmiI GTMKAC 2 cut(s) 465, 977
XspI CTAG 4 cut(s) 8, 89, 621, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.