Rh3BG276200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001762
Physical Location & Seq
Reverse (-)
27055869 .. 27057257
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG276200.1

Sequence Viewer

Length: 1029 bp
ATGAAAAGAAAAACAACGGAGACGATGGAGTCCTCTGGGTATCACAGTTTAGCCTGTAGTCCTCCTCCGGCGGAGCCAGAGATTTTCTACGTCATAGACGATATGCACATAGATAAATCAGATTGTGAGGGACCGAACGCCGACGGCCACTGTGAGAGTGTTTATCCCATCCTCGATGAAATTCTTCCTCCGGCGGAGCCAGAGATTGATGATGTGTATATAGATAATTCAGATTGTGAGGGACCAAACGCCGACGACCACTGTGAGAGTGTTTTTCCCATCCCCGATGAAATCCTAGATTCTAAATTGGAGGAATTTTTTCTGCAAATGAAATCGAACTATGAACCTTGCTATAGAGCCACACTGGATAAGGCTGCGCGAACCATCACATTCTCTCAACAACCACTCAAGTTGATGCCTGGTCCTGCTTTGAACAAATATGGCGTTCTTGAACTCAACACTTTCTTTGTGTACTTCCCCAAAAAACGAGCAACAAAGTTGAAAGCCGCATGGCCTGAGGTTGAATTAACCTTAAATGCCTACTCCCTTTCATGCGATCTGAATCTGGCCAAGTGTTGCATGCAAGTCTCAACAACCCCATCGCTTAATGATCCATGTATGATTGGAAAGGCTAGGCATCTCCTTAAACTGTTGTCCACAAGTCTTGTTCCGCCATATATGGCGTTAGAAATATTCCAAGAAGTTAGGCAACAGGAAACCATCAACATAGGATTTCAGCAGGGTGGGATTTGCTCAAAATTTGGGATCAAGAAGGATGACTATCTTAAACGATGGGAATGTCTCTTCTGCTCGCTAAAGGCACTTTCAAAAGCGACACATTGTCATATCTTTCTTGACGAAAACACTTTTACTGCTGTCATATCCGCAATCCTATTATTCTTCAGCTGTTTAATGTTCTCCAGGCTCCTATATCCATTAATGCCTGAAATATCTCATTGTTCTGCTGCCAGCAGCTACTATTGCAGGCTTATTGTTTGTTATTCTCTTCCGTTGGATTTCACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

342

Amino Acids

38.64

Weight (kDa)

4.94

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 154 - 232 2e-11 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccII CGCG 1 cut(s) 379
AciI CCGC 5 cut(s) 71, 194, 507, 671, 885
AclWI GGATC 2 cut(s) 605, 773
AcoI YGGCCR 2 cut(s) 145, 567
AcsI RAATTY 3 cut(s) 180, 314, 758
AcuI CTGAAG 1 cut(s) 886
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 5 cut(s) 433, 452, 502, 524, 828
AhdI GACNNNNNGTC 1 cut(s) 840
AjnI CCWGG 2 cut(s) 418, 920
AluBI AGCT 2 cut(s) 906, 975
AluI AGCT 2 cut(s) 906, 975
Alw26I GTCTC 3 cut(s) 14, 592, 806
AlwI GGATC 2 cut(s) 605, 773
AoxI GGCC 3 cut(s) 145, 512, 567
ApeKI GCWGC 3 cut(s) 374, 965, 972
ApoI RAATTY 3 cut(s) 180, 314, 758
AseI ATTAAT 1 cut(s) 938
Asp700I GAANNNNTTC 2 cut(s) 183, 318
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 3 cut(s) 131, 242, 422
AvaII GGWCC 3 cut(s) 131, 242, 422
AxyI CCTNAGG 1 cut(s) 516
BalI TGGCCA 1 cut(s) 569
BbvI GCAGC 3 cut(s) 361, 952, 984
BccI CCATC 7 cut(s) 19, 176, 287, 392, 607, 728, 786
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 420, 922
BcoDI GTCTC 3 cut(s) 14, 592, 806
BfaI CTAG 2 cut(s) 296, 633
BfmI CTRYAG 2 cut(s) 55, 352
BisI GCNGC 4 cut(s) 375, 507, 966, 973
BlsI GCNGC 4 cut(s) 376, 508, 967, 974
Bme1390I CCNGG 2 cut(s) 420, 922
Bme18I GGWCC 3 cut(s) 131, 242, 422
BmeRI GACNNNNNGTC 1 cut(s) 840
BmgT120I GGNCC 3 cut(s) 131, 242, 422
BmiI GGNNCC 5 cut(s) 75, 132, 198, 243, 926
BmrFI CCNGG 2 cut(s) 420, 922
BmsI GCATC 2 cut(s) 405, 646
BpmI CTGGAG 1 cut(s) 904
BpuEI CTTGAG 1 cut(s) 392
BsaBI GATNNNNATC 2 cut(s) 561, 780
Bse1I ACTGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 516
Bse8I GATNNNNATC 2 cut(s) 561, 780
BseBI CCWGG 2 cut(s) 420, 922
BseGI GGATG 3 cut(s) 168, 279, 781
BseJI GATNNNNATC 2 cut(s) 561, 780
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 361, 952, 984
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 3 cut(s) 147, 514, 569
BsiSI CCGG 2 cut(s) 68, 191
BslFI GGGAC 2 cut(s) 144, 255
BsmAI GTCTC 3 cut(s) 14, 592, 806
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 144, 255
BsnI GGCC 3 cut(s) 147, 514, 569
Bsp143I GATC 3 cut(s) 556, 610, 765
BspACI CCGC 5 cut(s) 71, 194, 507, 671, 885
BspANI GGCC 3 cut(s) 147, 514, 569
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 5 cut(s) 75, 132, 198, 243, 926
BspPI GGATC 2 cut(s) 605, 773
BsrI ACTGG 1 cut(s) 369
BssMI GATC 3 cut(s) 556, 610, 765
Bst2UI CCWGG 2 cut(s) 420, 922
Bst4CI ACNGT 4 cut(s) 47, 152, 263, 651
Bst6I CTCTTC 2 cut(s) 809, 1011
BstC8I GCNNGC 4 cut(s) 581, 812, 970, 986
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 3 cut(s) 168, 279, 781
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 559, 613, 768
BstMAI GTCTC 3 cut(s) 14, 592, 806
BstMBI GATC 3 cut(s) 556, 610, 765
BstMWI GCNNNNNNNGC 1 cut(s) 981
BstNI CCWGG 2 cut(s) 420, 922
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 2 cut(s) 418, 920
BstSFI CTRYAG 2 cut(s) 55, 352
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 361, 952, 984
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 3 cut(s) 147, 514, 569
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 3 cut(s) 168, 279, 781
BtsIMutI CAGTG 4 cut(s) 148, 259, 362, 1020
Cac8I GCNNGC 4 cut(s) 581, 812, 970, 986
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 131, 242, 422
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 4 cut(s) 393, 428, 646, 681
CviAII CATG 4 cut(s) 510, 552, 580, 615
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 516
DpnI GATC 3 cut(s) 558, 612, 767
DpnII GATC 3 cut(s) 556, 610, 765
DrdI GACNNNNNNGTC 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 840
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 145, 567
Eam1104I CTCTTC 2 cut(s) 809, 1011
Eam1105I GACNNNNNGTC 1 cut(s) 840
EarI CTCTTC 2 cut(s) 809, 1011
EciI GGCGGA 3 cut(s) 86, 209, 660
Eco47I GGWCC 3 cut(s) 131, 242, 422
Eco57I CTGAAG 1 cut(s) 886
Eco81I CCTNAGG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 418, 920
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 513, 555, 583, 618
FaqI GGGAC 2 cut(s) 144, 255
FatI CATG 4 cut(s) 509, 551, 579, 614
Fnu4HI GCNGC 4 cut(s) 375, 507, 966, 973
FokI GGATG 3 cut(s) 155, 266, 788
Fsp4HI GCNGC 4 cut(s) 375, 507, 966, 973
FspBI CTAG 2 cut(s) 296, 633
GlaI GCGC 1 cut(s) 378
GluI GCNGC 4 cut(s) 375, 507, 966, 973
GsuI CTGGAG 1 cut(s) 904
HaeIII GGCC 3 cut(s) 147, 514, 569
HapII CCGG 2 cut(s) 68, 191
HhaI GCGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 513, 555, 583, 618
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 3 cut(s) 29, 299, 562
HpaII CCGG 2 cut(s) 68, 191
Hpy166II GTNNAC 2 cut(s) 472, 657
Hpy188I TCNGA 3 cut(s) 121, 232, 561
Hpy188III TCNNGA 3 cut(s) 449, 769, 854
Hpy8I GTNNAC 2 cut(s) 472, 657
Hpy99I CGWCG 2 cut(s) 146, 257
HpyAV CCTTC 1 cut(s) 766
HpyCH4III ACNGT 4 cut(s) 47, 152, 263, 651
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 106, 325, 579, 583, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 981
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 513, 555, 583, 618
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 556, 610, 765
LmnI GCTCC 3 cut(s) 73, 196, 930
Lsp1109I GCAGC 3 cut(s) 361, 952, 984
LweI GCATC 2 cut(s) 405, 646
MaeI CTAG 2 cut(s) 296, 633
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 558, 612, 767
MboI GATC 3 cut(s) 556, 610, 765
MboII GAAGA 4 cut(s) 176, 796, 892, 998
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 6 cut(s) 180, 226, 305, 314, 524, 758
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 9 cut(s) 43, 72, 75, 121, 182, 198, 232, 304, 511
Mox20I TGGCCA 1 cut(s) 569
MroXI GAANNNNTTC 2 cut(s) 183, 318
MscI TGGCCA 1 cut(s) 569
MseI TTAA 7 cut(s) 527, 533, 606, 645, 786, 911, 938
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 906
MspI CCGG 2 cut(s) 68, 191
MspR9I CCNGG 2 cut(s) 420, 922
MvaI CCWGG 2 cut(s) 420, 922
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 981
NdeII GATC 3 cut(s) 556, 610, 765
NlaIII CATG 4 cut(s) 513, 555, 583, 618
NlaIV GGNNCC 5 cut(s) 75, 132, 198, 243, 926
NspI RCATGY 1 cut(s) 583
PaeI GCATGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 183, 318
PfeI GAWTC 2 cut(s) 299, 562
PkrI GCNGC 4 cut(s) 376, 508, 967, 974
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 938
Psp6I CCWGG 2 cut(s) 418, 920
PspGI CCWGG 2 cut(s) 418, 920
PspN4I GGNNCC 5 cut(s) 75, 132, 198, 243, 926
PspPI GGNCC 3 cut(s) 131, 242, 422
PvuII CAGCTG 1 cut(s) 906
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 7 cut(s) 527, 533, 606, 645, 786, 911, 938
SatI GCNGC 4 cut(s) 375, 507, 966, 973
Sau3AI GATC 3 cut(s) 556, 610, 765
Sau96I GGNCC 3 cut(s) 131, 242, 422
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 420, 922
SetI ASST 6 cut(s) 93, 349, 522, 533, 908, 977
SfaNI GCATC 2 cut(s) 405, 646
SfcI CTRYAG 2 cut(s) 55, 352
SinI GGWCC 3 cut(s) 131, 242, 422
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SphI GCATGC 1 cut(s) 583
Sse9I AATT 6 cut(s) 180, 226, 305, 314, 524, 758
SsiI CCGC 5 cut(s) 71, 194, 507, 671, 885
SspI AATATT 1 cut(s) 693
SspMI CTAG 2 cut(s) 296, 633
StyD4I CCNGG 2 cut(s) 418, 920
TaaI ACNGT 4 cut(s) 47, 152, 263, 651
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 174, 335
TaqII GACCGA 1 cut(s) 148
TasI AATT 6 cut(s) 180, 226, 305, 314, 524, 758
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 299, 562
Tru1I TTAA 7 cut(s) 527, 533, 606, 645, 786, 911, 938
Tru9I TTAA 7 cut(s) 527, 533, 606, 645, 786, 911, 938
TscAI CASTG 4 cut(s) 155, 266, 369, 1027
TseI GCWGC 3 cut(s) 374, 965, 972
TspDTI ATGAA 6 cut(s) 17, 192, 303, 344, 357, 540
TspGWI ACGGA 2 cut(s) 32, 999
TspRI CASTG 4 cut(s) 155, 266, 369, 1027
VpaK11BI GGWCC 3 cut(s) 131, 242, 422
VspI ATTAAT 1 cut(s) 938
XapI RAATTY 3 cut(s) 180, 314, 758
XceI RCATGY 1 cut(s) 583
XmnI GAANNNNTTC 2 cut(s) 183, 318
XspI CTAG 2 cut(s) 296, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.