Rw7G030540

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001762
Physical Location & Seq
Reverse (-)
43342944 .. 43346738
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030540.1

Sequence Viewer

Length: 735 bp
ATGATGGAGGAACCACTGGTCGACTACCGAGTTTATCCAATCCCCGATACAGTCCCAGATGAAAATTTGGAAAAATATTTTCAGAACGCGAAATCGAAATTAGAAAAGTTACGCATGACAATCACTCTGAATGCGGCTGAGCGAACCCTCACATTCGTTCAAGGGGTAAGTAAGTGGAACCCTGGCCCTGCCTTGAACAAATATGGCAAGTTTGAAATCACCACTTTCACTGTGCCTTCCCCGAAAATCGAGTTGGAACATATTTGGCCCGACGTCGAAGAAATCTTATATGAGTACGCCATTTCATGCAATCTCAATTTGGCTGAGTGTTCCATGCAAGTCTCAACAGCCACATTTCTTGATAATCCGTATGTCCTTGACAGAGCTAGACATCTCCTTCAACTGTTGTCCACAAGTCTTGTTCCGCCATATATGGCATTAGAAATATTCCAAGGCAGCAGGCAACATGAAATCATGGAGATAGGAGATCAGAAGGAGGGGCTTTGCACAAAATTTGGGATCAAGAAGGGGGAATATCTTAGACGATGGGAATGCCTCTTCTACTCCCTAAAGGCACTTTCAAAAGCAACACAATGTCATATCTTTCTTAACGAGAACACTTTTACTGCTGTGGAGAATACATTTGAAAGAATTTTATGGCTCAAGTCAGTTGTGGGAGACTGCGTCACCAAAAATTTGTGTCCTGCAACCTCTATCAGGAAGTTTGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

244

Amino Acids

28.08

Weight (kDa)

5.89

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 85 - 149 1.3e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 134, 425
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 4 cut(s) 64, 512, 651, 694
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 717
AgsI TTSAA 6 cut(s) 161, 196, 215, 401, 582, 647
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 346, 672
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 184, 266
ApeKI GCWGC 1 cut(s) 456
ApoI RAATTY 4 cut(s) 64, 512, 651, 694
AspS9I GGNCC 2 cut(s) 185, 267
AsuHPI GGTGA 2 cut(s) 211, 679
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 346, 672
BfaI CTAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 135, 457
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 2 cut(s) 136, 458
Bme1390I CCNGG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 185, 267
BmiI GGNNCC 2 cut(s) 12, 179
BmrFI CCNGG 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 181, 451
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 717
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 181, 451
BseLI CCNNNNNNNGG 1 cut(s) 717
BseMII CTCAG 2 cut(s) 129, 315
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 186, 268
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 717
BsmAI GTCTC 2 cut(s) 346, 672
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 136, 557
BsnI GGCC 2 cut(s) 186, 268
Bsp143I GATC 2 cut(s) 487, 519
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 2 cut(s) 134, 425
BspANI GGCC 2 cut(s) 186, 268
BspCNI CTCAG 2 cut(s) 130, 316
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 12, 179
BspPI GGATC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 181, 451
BssMI GATC 2 cut(s) 487, 519
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 52, 232, 405
Bst6I CTCTTC 1 cut(s) 563
BstACI GRCGYC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 3 cut(s) 138, 324, 539
BstENI CCTNNNNNAGG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 2 cut(s) 490, 522
BstMAI GTCTC 2 cut(s) 346, 672
BstMBI GATC 2 cut(s) 487, 519
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 186, 268
BtsIMutI CAGTG 2 cut(s) 14, 228
Cac8I GCNNGC 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 185, 267
CseI GACGC 1 cut(s) 673
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 4 cut(s) 340, 375, 400, 435
CviAII CATG 5 cut(s) 115, 306, 334, 467, 475
CviJI RGCY 8 cut(s) 137, 186, 268, 323, 350, 386, 502, 661
CviKI_1 RGCY 8 cut(s) 137, 186, 268, 323, 350, 386, 502, 661
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 138, 324, 539
DpnI GATC 2 cut(s) 489, 521
DpnII GATC 2 cut(s) 487, 519
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 118, 309, 337, 470, 478
FaqI GGGAC 1 cut(s) 38
FatI CATG 5 cut(s) 114, 305, 333, 466, 474
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 135, 457
Fsp4HI GCNGC 2 cut(s) 135, 457
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 135, 457
HaeIII GGCC 2 cut(s) 186, 268
HgaI GACGC 1 cut(s) 673
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 5 cut(s) 118, 309, 337, 470, 478
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HphI GGTGA 2 cut(s) 211, 679
Hpy166II GTNNAC 2 cut(s) 22, 411
Hpy188I TCNGA 3 cut(s) 84, 129, 492
Hpy188III TCNNGA 3 cut(s) 359, 523, 718
Hpy8I GTNNAC 2 cut(s) 22, 411
Hpy99I CGWCG 2 cut(s) 275, 278
HpyAV CCTTC 4 cut(s) 246, 407, 487, 520
HpyCH4III ACNGT 3 cut(s) 52, 232, 405
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 309, 337, 507, 707
HpyF3I CTNAG 3 cut(s) 138, 324, 539
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 5 cut(s) 118, 309, 337, 470, 478
Kzo9I GATC 2 cut(s) 487, 519
LpnPI CCDG 8 cut(s) 2, 69, 168, 195, 201, 445, 703, 717
Lsp1109I GCAGC 1 cut(s) 468
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 108, 685
MalI GATC 2 cut(s) 489, 521
MboI GATC 2 cut(s) 487, 519
MboII GAAGA 2 cut(s) 290, 550
MluCI AATT 6 cut(s) 64, 98, 316, 512, 651, 694
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 158, 490, 566, 721
MseI TTAA 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 2 cut(s) 136, 557
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 89
NdeII GATC 2 cut(s) 487, 519
NlaIII CATG 5 cut(s) 118, 309, 337, 470, 478
NlaIV GGNNCC 2 cut(s) 12, 179
NmuCI GTSAC 1 cut(s) 685
PctI GAATGC 2 cut(s) 136, 557
PflFI GACNNNGTC 1 cut(s) 683
PkrI GCNGC 2 cut(s) 136, 458
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 12, 179
PspPI GGNCC 2 cut(s) 185, 267
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 2 cut(s) 135, 457
Sau3AI GATC 2 cut(s) 487, 519
Sau96I GGNCC 2 cut(s) 185, 267
ScrFI CCNGG 1 cut(s) 183
SetI ASST 3 cut(s) 276, 388, 713
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 6 cut(s) 64, 98, 316, 512, 651, 694
SsiI CCGC 2 cut(s) 134, 425
SspI AATATT 2 cut(s) 77, 447
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 52, 232, 405
TaiI ACGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 21, 95, 249, 276
TasI AATT 6 cut(s) 64, 98, 316, 512, 651, 694
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 2 cut(s) 21, 235
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 3 cut(s) 75, 294, 483
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 21, 235
Tth111I GACNNNGTC 1 cut(s) 683
XagI CCTNNNNNAGG 1 cut(s) 715
XapI RAATTY 4 cut(s) 64, 512, 651, 694
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 387
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.