Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

61476218 .. 61482362

Gene Structure 6145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCCTGGTCCTGCTTTGAACAAATATGGCGTTCTTGAACTCAACACTGTCTTTGTGTACTTCCCTGAAAAACGAGGTGCCTTGCTCTCTTGCTCTCAGGATTCTTTCTTATGTTGCATGCAAGTCTCAACAACCCCATCGCTTAAGGATCCATGTATGATTGGAAAGGCTAGGCATCTCCTTATACTGTTGTCCACAAGTCTTGTTCCGCCATATATGCACACGGAATGCTTTAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTATATGCGTTACTCCATGAAAGACGAGGTGCCATACTCTTTTCTTCTTTTTGTACTTTCCTTTGTTGTCGGCTGCTCATCAGTTCTTATCCTCAATACGATAAGAATTCGATGGTGTTGTCAGCAACCAGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGCACACGGATATAGGAAATTCTGGGCCAGCGATGATGGTCATGCCTGAACTCAGCTCTTTCTGTATGTTCTTTGATGGAGAACAAGCAACTCTGTTGAAAAAAGATTGGAAGTGTGTGGAAGCGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGAGTGTTACATGATAGTCTCCAAAACTACAAACGCTGGGGATCCAGATGTCACTGACAAGATTTGGGATTTCCTTAAACTTCTGTCAATTGATGTTGAGCCTTCTAAGGAGCAATTTGCTGAAGTGGTGTGGCCGCATATTGAGCGCGGCTTAGAGGAAATTGCAACTCAACTGAAGTGCGAGTACATTATTAGTCCAGATGTTATTACTGTCTTGGGACCTGGAGAACTAGGGGTGTTCAGAAGGTTTGTGGAACGGTGTTTTTGTTTCAGACCTCGTCCGACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTTGTGAGGCTCGTGCACTTTTCTTTGGCGAGGATGTGGCCATGCTTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

349

Amino Acids

38.98

Weight (kDa)

6.2

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	963
Acc65I	GGTACC	1 cut(s)	416
AccB1I	GGYRCC	3 cut(s)	77, 311, 416
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	209, 659, 794, 807, 955
AclWI	GGATC	4 cut(s)	143, 156, 695, 708
AcoI	YGGCCR	2 cut(s)	791, 1029
AcsI	RAATTY	2 cut(s)	388, 511
AcuI	CTGAAG	2 cut(s)	801, 854
AfaI	GTAC	4 cut(s)	59, 337, 418, 845
AfiI	CCNNNNNNNGG	2 cut(s)	250, 989
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	19, 38, 272, 461, 592
AjnI	CCWGG	2 cut(s)	4, 880
AluBI	AGCT	2 cut(s)	454, 549
AluI	AGCT	2 cut(s)	454, 549
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	2 cut(s)	130, 682
Alw44I	GTGCAC	1 cut(s)	1005
AlwI	GGATC	4 cut(s)	143, 156, 695, 708
AoxI	GGCC	5 cut(s)	241, 518, 791, 1029, 1041
ApaLI	GTGCAC	1 cut(s)	1005
ApeKI	GCWGC	3 cut(s)	355, 451, 656
ApoI	RAATTY	2 cut(s)	388, 511
Asp718I	GGTACC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	4 cut(s)	8, 242, 518, 878
AvaII	GGWCC	2 cut(s)	8, 878
BaeGI	GKGCMC	1 cut(s)	1009
BalI	TGGCCA	1 cut(s)	1031
BamHI	GGATCC	2 cut(s)	148, 700
BanI	GGYRCC	3 cut(s)	77, 311, 416
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
BauI	CACGAG	1 cut(s)	1002
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	3 cut(s)	342, 463, 643
BccI	CCATC	5 cut(s)	145, 254, 388, 523, 563
BciT130I	CCWGG	2 cut(s)	6, 882
BcoDI	GTCTC	2 cut(s)	130, 682
BfaI	CTAG	4 cut(s)	171, 890, 960, 1045
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	963
BisI	GCNGC	5 cut(s)	356, 452, 657, 794, 808
BlsI	GCNGC	5 cut(s)	357, 453, 658, 795, 809
Bme1390I	CCNGG	2 cut(s)	6, 882
Bme18I	GGWCC	2 cut(s)	8, 878
BmgT120I	GGNCC	4 cut(s)	8, 242, 518, 878
BmiI	GGNNCC	7 cut(s)	79, 150, 313, 418, 426, 702, 879
BmrFI	CCNGG	2 cut(s)	6, 882
BmsI	GCATC	2 cut(s)	184, 497
BoxI	GACNNNNGTC	1 cut(s)	947
BpmI	CTGGAG	1 cut(s)	903
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 989
BseBI	CCWGG	2 cut(s)	6, 882
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	2 cut(s)	250, 989
BseMII	CTCAG	2 cut(s)	110, 559
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	3 cut(s)	342, 463, 643
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	5 cut(s)	243, 520, 793, 1031, 1043
BshNI	GGYRCC	3 cut(s)	77, 311, 416
BsiHKAI	GWGCWC	1 cut(s)	1009
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	2 cut(s)	250, 989
BsmAI	GTCTC	2 cut(s)	130, 682
BsmFI	GGGAC	1 cut(s)	891
BsmI	GAATGC	2 cut(s)	233, 270
BsnI	GGCC	5 cut(s)	243, 520, 793, 1031, 1043
Bsp1286I	GDGCHC	1 cut(s)	1009
Bsp143I	GATC	2 cut(s)	148, 700
BspACI	CCGC	5 cut(s)	209, 659, 794, 807, 955
BspANI	GGCC	5 cut(s)	243, 520, 793, 1031, 1043
BspCNI	CTCAG	2 cut(s)	109, 558
BspFNI	CGCG	1 cut(s)	807
BspLI	GGNNCC	7 cut(s)	79, 150, 313, 418, 426, 702, 879
BspMI	ACCTGC	1 cut(s)	963
BspPI	GGATC	4 cut(s)	143, 156, 695, 708
BspT107I	GGYRCC	3 cut(s)	77, 311, 416
BspTI	CTTAAG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	2 cut(s)	148, 700
BssSI	CACGAG	1 cut(s)	1002
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	1002
Bst2UI	CCWGG	2 cut(s)	6, 882
Bst4CI	ACNGT	4 cut(s)	49, 189, 871, 918
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	5 cut(s)	119, 281, 522, 619, 957
BstDEI	CTNAG	4 cut(s)	96, 545, 765, 811
BstF5I	GGATG	1 cut(s)	1030
BstFNI	CGCG	1 cut(s)	807
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	2 cut(s)	151, 703
BstMAI	GTCTC	2 cut(s)	130, 682
BstMBI	GATC	2 cut(s)	148, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 642, 802
BstNI	CCWGG	2 cut(s)	6, 882
BstNSI	RCATGY	1 cut(s)	121
BstPAI	GACNNNNGTC	1 cut(s)	947
BstSCI	CCNGG	2 cut(s)	4, 880
BstSLI	GKGCMC	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	3 cut(s)	342, 463, 643
BstX2I	RGATCY	2 cut(s)	148, 700
BstYI	RGATCY	2 cut(s)	148, 700
BsuRI	GGCC	5 cut(s)	243, 520, 793, 1031, 1043
BtgZI	GCGATG	2 cut(s)	123, 539
BtsCI	GGATG	1 cut(s)	1030
BtsIMutI	CAGTG	2 cut(s)	45, 711
BveI	ACCTGC	1 cut(s)	963
Cac8I	GCNNGC	5 cut(s)	119, 281, 522, 619, 957
CfoI	GCGC	1 cut(s)	807
Cfr13I	GGNCC	4 cut(s)	8, 242, 518, 878
Csp6I	GTAC	4 cut(s)	58, 336, 417, 844
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	9 cut(s)	118, 153, 299, 479, 535, 632, 670, 952, 1033
CviQI	GTAC	4 cut(s)	58, 336, 417, 844
DdeI	CTNAG	4 cut(s)	96, 545, 765, 811
DpnI	GATC	2 cut(s)	150, 702
DpnII	GATC	2 cut(s)	148, 700
EaeI	YGGCCR	2 cut(s)	791, 1029
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	8, 878
Eco57I	CTGAAG	2 cut(s)	801, 854
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	4, 880
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	9 cut(s)	121, 156, 302, 482, 538, 635, 673, 955, 1036
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	9 cut(s)	117, 152, 298, 478, 534, 631, 669, 951, 1032
FauI	CCCGC	1 cut(s)	948
Fnu4HI	GCNGC	5 cut(s)	356, 452, 657, 794, 808
FokI	GGATG	1 cut(s)	1037
Fsp4HI	GCNGC	5 cut(s)	356, 452, 657, 794, 808
FspBI	CTAG	4 cut(s)	171, 890, 960, 1045
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	5 cut(s)	356, 452, 657, 794, 808
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	5 cut(s)	243, 520, 793, 1031, 1043
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	9 cut(s)	121, 156, 302, 482, 538, 635, 673, 955, 1036
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	58, 195, 471, 1007
Hpy188I	TCNGA	4 cut(s)	253, 902, 932, 942
Hpy188III	TCNNGA	4 cut(s)	35, 98, 704, 857
Hpy8I	GTNNAC	4 cut(s)	58, 195, 471, 1007
HpyAV	CCTTC	2 cut(s)	771, 897
HpyCH4III	ACNGT	4 cut(s)	49, 189, 871, 918
HpyCH4V	TGCA	7 cut(s)	117, 121, 220, 496, 645, 824, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 642, 802
HpyF3I	CTNAG	4 cut(s)	96, 545, 765, 811
Hsp92II	CATG	9 cut(s)	121, 156, 302, 482, 538, 635, 673, 955, 1036
HspAI	GCGC	1 cut(s)	805
KpnI	GGTACC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	148, 700
LmnI	GCTCC	3 cut(s)	424, 459, 769
Lsp1109I	GCAGC	3 cut(s)	342, 463, 643
LweI	GCATC	2 cut(s)	184, 497
MaeI	CTAG	4 cut(s)	171, 890, 960, 1045
MaeIII	GTNAC	3 cut(s)	291, 665, 709
MalI	GATC	2 cut(s)	150, 702
MboI	GATC	2 cut(s)	148, 700
MboII	GAAGA	1 cut(s)	318
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	2 cut(s)	148, 700
MhlI	GDGCHC	1 cut(s)	1009
MlsI	TGGCCA	1 cut(s)	1031
MluCI	AATT	5 cut(s)	388, 511, 747, 773, 819
MluNI	TGGCCA	1 cut(s)	1031
MmeI	TCCRAC	2 cut(s)	231, 965
MnlI	CCTC	9 cut(s)	68, 302, 384, 407, 808, 945, 991, 1015, 1033
Mox20I	TGGCCA	1 cut(s)	1031
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	4 cut(s)	144, 234, 623, 735
Msp20I	TGGCCA	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	6, 882
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	2 cut(s)	233, 270
MvaI	CCWGG	2 cut(s)	6, 882
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	3 cut(s)	217, 642, 802
NdeII	GATC	2 cut(s)	148, 700
NlaIII	CATG	9 cut(s)	121, 156, 302, 482, 538, 635, 673, 955, 1036
NlaIV	GGNNCC	7 cut(s)	79, 150, 313, 418, 426, 702, 879
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	1043
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PctI	GAATGC	2 cut(s)	233, 270
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	936
PflMI	CCANNNNNTGG	1 cut(s)	989
PkrI	GCNGC	5 cut(s)	357, 453, 658, 795, 809
PpuMI	RGGWCCY	1 cut(s)	878
PshAI	GACNNNNGTC	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	4, 880
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	2 cut(s)	4, 880
PspN4I	GGNNCC	7 cut(s)	79, 150, 313, 418, 426, 702, 879
PspPI	GGNCC	4 cut(s)	8, 242, 518, 878
PspPPI	RGGWCCY	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	148, 700
PsyI	GACNNNGTC	1 cut(s)	936
RsaI	GTAC	4 cut(s)	59, 337, 418, 845
RsaNI	GTAC	4 cut(s)	58, 336, 417, 844
SaqAI	TTAA	4 cut(s)	144, 234, 623, 735
SatI	GCNGC	5 cut(s)	356, 452, 657, 794, 808
Sau3AI	GATC	2 cut(s)	148, 700
Sau96I	GGNCC	4 cut(s)	8, 242, 518, 878
ScrFI	CCNGG	2 cut(s)	6, 882
SduI	GDGCHC	1 cut(s)	1009
SfaNI	GCATC	2 cut(s)	184, 497
SinI	GGWCC	2 cut(s)	8, 878
SmlI	CTYRAG	2 cut(s)	143, 1037
SmoI	CTYRAG	2 cut(s)	143, 1037
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	5 cut(s)	388, 511, 747, 773, 819
SseBI	AGGCCT	1 cut(s)	1043
SsiI	CCGC	5 cut(s)	209, 659, 794, 807, 955
SspMI	CTAG	4 cut(s)	171, 890, 960, 1045
StuI	AGGCCT	1 cut(s)	1043
StyD4I	CCNGG	2 cut(s)	4, 880
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	4 cut(s)	49, 189, 871, 918
TaqI	TCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	388, 511, 747, 773, 819
TatI	WGTACW	3 cut(s)	57, 335, 843
TauI	GCSGC	2 cut(s)	796, 810
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	4 cut(s)	144, 234, 623, 735
Tru9I	TTAA	4 cut(s)	144, 234, 623, 735
TscAI	CASTG	2 cut(s)	52, 718
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	3 cut(s)	355, 451, 656
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	2 cut(s)	239, 515
TspRI	CASTG	2 cut(s)	52, 718
Tth111I	GACNNNGTC	1 cut(s)	936
Van91I	CCANNNNNTGG	1 cut(s)	989
Vha464I	CTTAAG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	1005
VpaK11BI	GGWCC	2 cut(s)	8, 878
XapI	RAATTY	2 cut(s)	388, 511
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	4 cut(s)	171, 890, 960, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.