Rh7CG377800

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001762
Physical Location & Seq
Reverse (-)
47515448 .. 47519783
4336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG377800.1

Sequence Viewer

Length: 1017 bp
ATGACAATCACTCTGAATGCGGCTGAGCGAACCCTCACATTCGTTCAAGGGGTAAGTAAGTGGAACCCTGGCCCTGCCTTGAACAAATATGGCAAGTTTGAAATCACCACTTTCACTGTGCCCTTCCCCGAAAATCGAGCAACAAAGTTGGAACATGTTTGGCCCGACGTCGAAGAAATCTTATATGAGTACGCCATTTCATGCAATCTCAATTTGGCTGAGTGTTCCATGCAAGTCTCAACAACCACATTTCTTGATAATCCGTATGTCCTTGACAGAGCTAGACATCTCCTTCAACTGTTGTCCACAAGTCTTGTTCCGCCATATATGAAATATTCCAAGGCAGCAGGCAGCAGGCAACATGAAATCATGGAGATAGGAGATCAGCAGGAGGGGCTTTGCACAAAATTTGGGATCAAGAAGGGGGAATATCTTAGACGATGGGAATGCCTCTTCTACTCCCTAAAGGCACTTTCAAAAGTAACACAAGGTCATATCTTTCTTAACGAGAACACTTTTACTGCTGTGACTGCTGTGGAGAATACATTTGAAAGAATTTTATGGCTCAAGTCAGTTGTGGGAGACTGCATCACCAAAAATTTGTGTCCTGCAACCTCTATCAGGAAGTTTGGAAACGAATTTGGAATGCATCAATCGATGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGTGTGGTCTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGCAATAGAAATATTGGATGGTAGTATGGAAACTCGCCTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCACTCCCTACAGCCAAATCTTATTACTGCTGCGGTCCGCATGAACAAATGGATGAATTCAGCAAGTTTGTGCAATGTTGCTTTGATTGGAGGCGTCAACCGACTTGTACAATGGGAGTGTAGACGTAAACCCCCGCAGCTCAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

338

Amino Acids

38.56

Weight (kDa)

6.27

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 37 - 104 4.9e-11 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 988
AciI CCGC 5 cut(s) 20, 320, 899, 904, 1001
AclWI GGATC 4 cut(s) 422, 668, 681, 833
AcsI RAATTY 5 cut(s) 407, 555, 598, 638, 922
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 2 cut(s) 168, 960
AfaI GTAC 2 cut(s) 191, 975
AfiI CCNNNNNNNGG 1 cut(s) 621
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 6 cut(s) 47, 82, 101, 296, 477, 551
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 281, 1006
AluI AGCT 2 cut(s) 281, 1006
Alw26I GTCTC 2 cut(s) 241, 576
AlwI GGATC 4 cut(s) 422, 668, 681, 833
AoxI GGCC 2 cut(s) 70, 161
ApeKI GCWGC 4 cut(s) 344, 351, 896, 1003
ApoI RAATTY 5 cut(s) 407, 555, 598, 638, 922
Asp700I GAANNNNTTC 1 cut(s) 861
AspS9I GGNCC 3 cut(s) 71, 162, 901
AsuHPI GGTGA 2 cut(s) 97, 583
AvaII GGWCC 1 cut(s) 901
BaeGI GKGCMC 1 cut(s) 123
BamHI GGATCC 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 854
BbvI GCAGC 3 cut(s) 356, 363, 883
BccI CCATC 5 cut(s) 435, 652, 691, 752, 846
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 241, 576
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 875
BisI GCNGC 5 cut(s) 21, 345, 352, 897, 1004
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 5 cut(s) 22, 346, 353, 898, 1005
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 901
BmgT120I GGNCC 3 cut(s) 71, 162, 901
BmiI GGNNCC 2 cut(s) 65, 675
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 597, 658
BpiI GAAGAC 1 cut(s) 854
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 3 cut(s) 551, 689, 992
Bsa29I ATCGAT 1 cut(s) 656
BsaHI GRCGYC 2 cut(s) 168, 960
BsaJI CCNNGG 2 cut(s) 67, 339
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 946
BseBI CCWGG 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 656
BseDI CCNNGG 2 cut(s) 67, 339
BseGI GGATG 3 cut(s) 667, 763, 924
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 4 cut(s) 15, 210, 736, 828
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 3 cut(s) 356, 363, 883
BshFI GGCC 2 cut(s) 72, 163
BshVI ATCGAT 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 2 cut(s) 241, 576
BsmI GAATGC 3 cut(s) 22, 452, 651
BsnI GGCC 2 cut(s) 72, 163
Bsp1286I GDGCHC 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 5 cut(s) 382, 414, 664, 673, 825
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 5 cut(s) 20, 320, 899, 904, 1001
BspANI GGCC 2 cut(s) 72, 163
BspCNI CTCAG 4 cut(s) 16, 211, 735, 827
BspDI ATCGAT 1 cut(s) 656
BspHI TCATGA 1 cut(s) 1013
BspLI GGNNCC 2 cut(s) 65, 675
BspPI GGATC 4 cut(s) 422, 668, 681, 833
BsrDI GCAATG 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 973
BssECI CCNNGG 2 cut(s) 67, 339
BssMI GATC 5 cut(s) 382, 414, 664, 673, 825
BssNI GRCGYC 2 cut(s) 168, 960
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 118, 300
Bst6I CTCTTC 1 cut(s) 458
BstACI GRCGYC 2 cut(s) 168, 960
BstAUI TGTACA 1 cut(s) 973
BstC8I GCNNGC 3 cut(s) 349, 356, 734
BstDEI CTNAG 5 cut(s) 24, 219, 434, 722, 814
BstENI CCTNNNNNAGG 1 cut(s) 619
BstF5I GGATG 3 cut(s) 667, 763, 924
BstKTI GATC 5 cut(s) 385, 417, 667, 676, 828
BstMAI GTCTC 2 cut(s) 241, 576
BstMBI GATC 5 cut(s) 382, 414, 664, 673, 825
BstMWI GCNNNNNNNGC 2 cut(s) 394, 530
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 3 cut(s) 158, 683, 736
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 875
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 356, 363, 883
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 1 cut(s) 673
Bsu15I ATCGAT 1 cut(s) 656
BsuRI GGCC 2 cut(s) 72, 163
BsuTUI ATCGAT 1 cut(s) 656
BtsCI GGATG 3 cut(s) 667, 763, 924
BtsIMutI CAGTG 2 cut(s) 114, 835
Cac8I GCNNGC 3 cut(s) 349, 356, 734
CciI TCATGA 1 cut(s) 1013
Cfr13I GGNCC 3 cut(s) 71, 162, 901
ClaI ATCGAT 1 cut(s) 656
CpoI CGGWCCG 1 cut(s) 901
CseI GACGC 1 cut(s) 949
Csp6I GTAC 2 cut(s) 190, 974
CspCI CAANNNNNGTGG 4 cut(s) 235, 270, 295, 330
CspI CGGWCCG 1 cut(s) 901
CviJI RGCY 9 cut(s) 23, 72, 163, 218, 281, 397, 565, 880, 1006
CviKI_1 RGCY 9 cut(s) 23, 72, 163, 218, 281, 397, 565, 880, 1006
CviQI GTAC 2 cut(s) 190, 974
DdeI CTNAG 5 cut(s) 24, 219, 434, 722, 814
DpnI GATC 5 cut(s) 384, 416, 666, 675, 827
DpnII GATC 5 cut(s) 382, 414, 664, 673, 825
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 922
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 339
FauI CCCGC 1 cut(s) 1008
FblI GTMKAC 1 cut(s) 988
Fnu4HI GCNGC 5 cut(s) 21, 345, 352, 897, 1004
FokI GGATG 3 cut(s) 674, 770, 931
Fsp4HI GCNGC 5 cut(s) 21, 345, 352, 897, 1004
FspBI CTAG 1 cut(s) 282
GluI GCNGC 5 cut(s) 21, 345, 352, 897, 1004
HaeIII GGCC 2 cut(s) 72, 163
HgaI GACGC 1 cut(s) 949
Hin1I GRCGYC 2 cut(s) 168, 960
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 1 cut(s) 793
HphI GGTGA 2 cut(s) 97, 583
Hpy166II GTNNAC 4 cut(s) 306, 964, 989, 995
Hpy188I TCNGA 3 cut(s) 15, 725, 817
Hpy188III TCNNGA 6 cut(s) 254, 418, 622, 668, 797, 1014
Hpy8I GTNNAC 4 cut(s) 306, 964, 989, 995
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 4 cut(s) 133, 302, 415, 794
HpyCH4III ACNGT 2 cut(s) 118, 300
HpyCH4IV ACGT 2 cut(s) 168, 991
HpyCH4V TGCA 7 cut(s) 204, 232, 402, 588, 611, 649, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 530
HpyF3I CTNAG 5 cut(s) 24, 219, 434, 722, 814
HpySE526I ACGT 2 cut(s) 168, 991
Hsp92I GRCGYC 2 cut(s) 168, 960
Kzo9I GATC 5 cut(s) 382, 414, 664, 673, 825
LpnPI CCDG 9 cut(s) 54, 81, 87, 333, 340, 374, 607, 621, 750
Lsp1109I GCAGC 3 cut(s) 356, 363, 883
LweI GCATC 2 cut(s) 597, 658
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 168, 991
MaeIII GTNAC 2 cut(s) 481, 526
MalI GATC 5 cut(s) 384, 416, 666, 675, 827
MboI GATC 5 cut(s) 382, 414, 664, 673, 825
MboII GAAGA 3 cut(s) 185, 445, 854
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 8 cut(s) 211, 407, 555, 598, 638, 780, 786, 922
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 8 cut(s) 44, 385, 461, 625, 664, 826, 829, 950
Mph1103I ATGCAT 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 2 cut(s) 504, 783
MslI CAYNNNNRTG 1 cut(s) 695
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 3 cut(s) 22, 452, 651
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 394, 530
NdeII GATC 5 cut(s) 382, 414, 664, 673, 825
NlaIV GGNNCC 2 cut(s) 65, 675
NmuCI GTSAC 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 3 cut(s) 158, 683, 736
PaeI GCATGC 1 cut(s) 736
PagI TCATGA 1 cut(s) 1013
PciI ACATGT 1 cut(s) 154
PctI GAATGC 3 cut(s) 22, 452, 651
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 1 cut(s) 793
PkrI GCNGC 5 cut(s) 22, 346, 353, 898, 1005
PscI ACATGT 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 65, 675
PspPI GGNCC 3 cut(s) 71, 162, 901
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 191, 975
RsaNI GTAC 2 cut(s) 190, 974
RseI CAYNNNNRTG 1 cut(s) 695
Rsr2I CGGWCCG 1 cut(s) 901
RsrII CGGWCCG 1 cut(s) 901
SaqAI TTAA 2 cut(s) 504, 783
SatI GCNGC 5 cut(s) 21, 345, 352, 897, 1004
Sau3AI GATC 5 cut(s) 382, 414, 664, 673, 825
Sau96I GGNCC 3 cut(s) 71, 162, 901
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 123
SetI ASST 8 cut(s) 171, 283, 493, 617, 805, 846, 994, 1008
SfaNI GCATC 2 cut(s) 597, 658
SfcI CTRYAG 1 cut(s) 875
SinI GGWCC 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 3 cut(s) 566, 668, 1007
SmoI CTYRAG 3 cut(s) 566, 668, 1007
SphI GCATGC 1 cut(s) 736
Sse9I AATT 8 cut(s) 211, 407, 555, 598, 638, 780, 786, 922
SsiI CCGC 5 cut(s) 20, 320, 899, 904, 1001
SspI AATATT 2 cut(s) 335, 753
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 118, 300
TaiI ACGT 2 cut(s) 171, 994
TaqI TCGA 3 cut(s) 136, 171, 656
TasI AATT 8 cut(s) 211, 407, 555, 598, 638, 780, 786, 922
TatI WGTACW 1 cut(s) 973
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 2 cut(s) 504, 783
Tru9I TTAA 2 cut(s) 504, 783
TscAI CASTG 2 cut(s) 121, 835
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 4 cut(s) 344, 351, 896, 1003
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 5 cut(s) 189, 344, 378, 923, 935
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 121, 835
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 619
XapI RAATTY 5 cut(s) 407, 555, 598, 638, 922
XceI RCATGY 3 cut(s) 158, 683, 736
XmiI GTMKAC 1 cut(s) 988
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 1 cut(s) 282
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.