Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

25215267 .. 25215737

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG240500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATAGTCTCCAAAACAACAAACGCTGGGGATCCAGATATCACTGACAAGATTTGGGATTTCCTTAAACTTTTGTCAATTGATGTTGAGCCTTCTAAGACAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACGGGGTATAGATATGGTGGGCTCTGTTCAAAATTTAGGATCACTGAGGAGCAATATGCTGAAGTGGTGTGGCCACATATTGACCGCGGCTTAGAGGAAATTTCAACTGAACTGAACTGCGAGTACATTATTAGTCCGAACTTTATTACTGTCTTGGGACCTGGAGAACTAGGGGTGTTCAGAAGGTTTGTGGAACAGTGTTTTTGTTTCAGACCTCGTCCGACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTTGTGAGGCTCGTGCATTTTTCTTTGGCGAGGATGTGGCCACGCTTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

156

Amino Acids

17.84

Weight (kDa)

5.26

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	387
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	229, 231, 379
AclWI	GGATC	3 cut(s)	26, 39, 191
AcoI	YGGCCR	3 cut(s)	118, 215, 453
AcsI	RAATTY	2 cut(s)	176, 243
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	111, 269
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	174, 249
AjnI	CCWGG	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	3 cut(s)	26, 39, 191
AoxI	GGCC	4 cut(s)	118, 215, 453, 465
ApoI	RAATTY	2 cut(s)	176, 243
AspS9I	GGNCC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	2 cut(s)	217, 455
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	426
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	314, 384, 469
BfuAI	ACCTGC	1 cut(s)	387
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	33, 303
BmrFI	CCNGG	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	138, 454
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	120, 217, 455, 467
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	120, 217, 455, 467
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	31, 183
BspACI	CCGC	3 cut(s)	229, 231, 379
BspANI	GGCC	4 cut(s)	120, 217, 455, 467
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	33, 303
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	3 cut(s)	26, 39, 191
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	31, 183
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	295, 342
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	96, 189, 235
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	138, 454
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	34, 186
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	31, 183
BstNI	CCWGG	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	120, 217, 455, 467
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	138, 454
BtsIMutI	CAGTG	3 cut(s)	42, 186, 347
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	302
Cfr42I	CCGCGG	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	110, 268
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	9 cut(s)	91, 120, 166, 217, 234, 383, 425, 455, 467
CviKI_1	RGCY	9 cut(s)	91, 120, 166, 217, 234, 383, 425, 455, 467
CviQI	GTAC	2 cut(s)	110, 268
DdeI	CTNAG	3 cut(s)	96, 189, 235
DpnI	GATC	2 cut(s)	33, 185
DpnII	GATC	2 cut(s)	31, 183
EaeI	YGGCCR	3 cut(s)	118, 215, 453
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	379
FaiI	YATR	5 cut(s)	153, 159, 201, 222, 377
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	125, 461
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	3 cut(s)	314, 384, 469
GluI	GCNGC	1 cut(s)	232
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	120, 217, 455, 467
Hin1II	CATG	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	282, 326, 356, 366
Hpy188III	TCNNGA	2 cut(s)	35, 142
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	102, 321
HpyCH4III	ACNGT	2 cut(s)	295, 342
HpyCH4V	TGCA	2 cut(s)	127, 431
HpyF3I	CTNAG	3 cut(s)	96, 189, 235
Hsp92II	CATG	1 cut(s)	379
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	31, 183
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	12, 48, 291, 318, 382
MaeI	CTAG	3 cut(s)	314, 384, 469
MalI	GATC	2 cut(s)	33, 185
MboI	GATC	2 cut(s)	31, 183
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	2 cut(s)	217, 455
MluCI	AATT	3 cut(s)	78, 176, 243
MluNI	TGGCCA	2 cut(s)	217, 455
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	6 cut(s)	184, 232, 369, 415, 439, 457
Mox20I	TGGCCA	2 cut(s)	217, 455
MscI	TGGCCA	2 cut(s)	217, 455
MseI	TTAA	1 cut(s)	66
Msp20I	TGGCCA	2 cut(s)	217, 455
MspA1I	CMGCKG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	231
NdeII	GATC	2 cut(s)	31, 183
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	33, 303
PceI	AGGCCT	1 cut(s)	467
PflFI	GACNNNGTC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	33, 303
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	360
RsaI	GTAC	2 cut(s)	111, 269
RsaNI	GTAC	2 cut(s)	110, 268
SacII	CCGCGG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	2 cut(s)	31, 183
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	307, 332, 361, 401, 412
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	78, 176, 243
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	3 cut(s)	229, 231, 379
SspMI	CTAG	3 cut(s)	314, 384, 469
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	295, 342
TasI	AATT	3 cut(s)	78, 176, 243
TatI	WGTACW	2 cut(s)	109, 267
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	3 cut(s)	49, 193, 347
TspDTI	ATGAA	1 cut(s)	127
TspRI	CASTG	3 cut(s)	49, 193, 347
Tth111I	GACNNNGTC	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	176, 243
XspI	CTAG	3 cut(s)	314, 384, 469
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.