Rh5CG142200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001762
Physical Location & Seq
Forward (+)
12565982 .. 12566818
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG142200.1

Sequence Viewer

Length: 330 bp
ATGCATCAATCGGTGGATGATATTGAGGACCCACATGCCAAGCATATGGAAATGGTGAGGTTTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGTCTGCTCTCTCTATACGTTACTCCATGAAAAACGAGCAGCAAAGTTGCTAGAAGCTTCGTCGATGCTGGAGTCTTCCCTAATCAACTATGGCATTTCATGTACTCTGGAGAAGGATTCCATGGCACTCACAATAACGAGATGTACTAAGGAGCCATATATCATTGACAAGGCTTTGCAGCTACTTGAACTTTTGGTGAAGAACCAACCCAGTAAAAGATTCTCAATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

109

Amino Acids

12.52

Weight (kDa)

6.06

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 199, 241
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 2 cut(s) 152, 277
AluI AGCT 2 cut(s) 152, 277
ApeKI GCWGC 2 cut(s) 134, 274
AseI ATTAAT 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 67, 304
AvaII GGWCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 146, 286
BfaI CTAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 135, 275
BlsI GCNGC 2 cut(s) 136, 276
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 30, 249
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 13, 150
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 185, 224
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 146, 286
Bsp19I CCATGG 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 30, 249
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 77, 243
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 38, 91
BstV1I GCAGC 2 cut(s) 146, 286
BstV2I GAAGAC 1 cut(s) 162
BstXI CCANNNNNNTGG 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 198, 240
CviAII CATG 5 cut(s) 35, 88, 122, 195, 217
CviJI RGCY 4 cut(s) 152, 250, 269, 277
CviKI_1 RGCY 4 cut(s) 152, 250, 269, 277
CviQI GTAC 2 cut(s) 198, 240
DdeI CTNAG 2 cut(s) 77, 243
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 5 cut(s) 38, 91, 125, 198, 220
FatI CATG 5 cut(s) 34, 87, 121, 194, 216
FauNDI CATATG 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 135, 275
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 135, 275
FspBI CTAG 1 cut(s) 146
GluI GCNGC 2 cut(s) 135, 275
GsuI CTGGAG 2 cut(s) 185, 224
Hin1II CATG 5 cut(s) 38, 91, 125, 198, 220
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 167, 212, 315
HphI GGTGA 2 cut(s) 67, 304
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 4, 274
HpyF3I CTNAG 2 cut(s) 77, 243
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 5 cut(s) 38, 91, 125, 198, 220
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 105, 149, 188, 319
Lsp1109I GCAGC 2 cut(s) 146, 286
LweI GCATC 2 cut(s) 13, 150
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 114
MboII GAAGA 2 cut(s) 162, 307
MluCI AATT 2 cut(s) 321, 325
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 2 cut(s) 19, 51
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 324, 328
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 45
NlaIII CATG 5 cut(s) 38, 91, 125, 198, 220
NlaIV GGNNCC 2 cut(s) 30, 249
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 38, 91
PacI TTAATTAA 1 cut(s) 328
PaeI GCATGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 212, 315
PkrI GCNGC 2 cut(s) 136, 276
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 30, 249
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
RsaI GTAC 2 cut(s) 199, 241
RsaNI GTAC 2 cut(s) 198, 240
SaqAI TTAA 2 cut(s) 324, 328
SatI GCNGC 2 cut(s) 135, 275
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 176
SetI ASST 4 cut(s) 62, 116, 154, 279
SfaNI GCATC 2 cut(s) 13, 150
SinI GGWCC 1 cut(s) 28
SphI GCATGC 1 cut(s) 91
Sse9I AATT 2 cut(s) 321, 325
SspMI CTAG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 158
TasI AATT 2 cut(s) 321, 325
TatI WGTACW 2 cut(s) 197, 239
TfiI GAWTC 2 cut(s) 212, 315
Tru1I TTAA 2 cut(s) 324, 328
Tru9I TTAA 2 cut(s) 324, 328
TseI GCWGC 2 cut(s) 134, 274
TspDTI ATGAA 2 cut(s) 138, 183
VpaK11BI GGWCC 1 cut(s) 28
VspI ATTAAT 1 cut(s) 324
XceI RCATGY 2 cut(s) 38, 91
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.