Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

22718312 .. 22719142

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGTTAGAAATATTCCAAGAAGTTAGGCAGCAGGAAACCATCAACATAGGATTTCAAAGAGGTGGGATTTGCTCAAAATTGGGGATCAAGAAGGATGATTATCTTAAACGATGGGAATGTCTCTCCCGCTCTCTAAAGGCACTTTCAAAAGCGACACATTCACAAGGAATGCTTGAAGTCCGGCCCTTTCGGGACAAAGATGGAATGCTTGAAGTCCGCTCGCTCTATGCGTTACTCCATGAAAGACGAGTATCGAAGTTGCAAGAATCTTTGCCAATGCTCGAGTCTTCCCTAAGGAACTACGGCATTTCATATACTCGGGATAAGAATTCGATGGTATTGTCGGCGCAACCGAAGTACCAAGGAGCCGATATCATTGACAAGACTTGGCGCCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGCGTGCAAACTTGCCTTATCAAAATTGGGAATCAAGAAGGTGGACTCGCTCATTATCCGGGATCAAGGAGGAGGAATACCATGAACGATGGGAATGTCTTCGCCACTCCCTACGGATACTTGCCGAAGTGGTGGAGTGTAATGTATTTCTTAACGATAACACCGTTGTCGCCGTGGGGGAAACCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

215

Amino Acids

24.65

Weight (kDa)

9.45

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccBSI	CCGCTC	2 cut(s)	132, 222
AciI	CCGC	2 cut(s)	130, 220
AclWI	GGATC	2 cut(s)	95, 526
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	59, 150, 179, 215, 404
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	95, 526
Ama87I	CYCGRG	2 cut(s)	284, 321
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	352, 396
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	516
AvaI	CYCGRG	2 cut(s)	284, 321
AxyI	CCTNAGG	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	344, 377
BanI	GGYRCC	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	282, 547
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	5 cut(s)	50, 108, 197, 331, 539
BceAI	ACGGC	2 cut(s)	322, 613
BciVI	GTATCC	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	284, 321
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	370, 395
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	282, 547
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	364, 629, 641
Bse21I	CCTNAGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	364, 629, 641
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	284, 321
BsiSI	CCGG	2 cut(s)	184, 515
BslFI	GGGAC	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	2 cut(s)	177, 213
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	284, 321
Bsp143I	GATC	2 cut(s)	87, 518
BspACI	CCGC	2 cut(s)	130, 220
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	370, 395
BspPI	GGATC	2 cut(s)	95, 526
BspT107I	GGYRCC	1 cut(s)	393
BsrBI	CCGCTC	2 cut(s)	132, 222
BssECI	CCNNGG	3 cut(s)	364, 629, 641
BssMI	GATC	2 cut(s)	87, 518
BssNI	GRCGYC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	224, 461
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	352, 396
BstKTI	GATC	2 cut(s)	90, 521
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	87, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	282, 547
Bsu36I	CCTNAGG	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	224, 461
CfoI	GCGC	2 cut(s)	352, 396
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	242, 422, 538
CviJI	RGCY	2 cut(s)	187, 371
CviKI_1	RGCY	2 cut(s)	187, 371
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	2 cut(s)	89, 520
DpnII	GATC	2 cut(s)	87, 518
Eco130I	CCWWGG	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	284, 321
EcoRI	GAATTC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	364
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	3 cut(s)	245, 425, 541
FaiI	YATR	8 cut(s)	50, 231, 243, 316, 318, 423, 437, 539
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	241, 421, 537
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	2 cut(s)	351, 395
GluI	GCNGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	2 cut(s)	184, 515
HhaI	GCGC	2 cut(s)	352, 396
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	245, 425, 541
Hin6I	GCGC	2 cut(s)	350, 394
HinP1I	GCGC	2 cut(s)	350, 394
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	4 cut(s)	269, 287, 487, 501
HpaII	CCGG	2 cut(s)	184, 515
Hpy166II	GTNNAC	2 cut(s)	414, 500
Hpy188III	TCNNGA	4 cut(s)	91, 194, 323, 491
Hpy8I	GTNNAC	2 cut(s)	414, 500
HpyAV	CCTTC	2 cut(s)	88, 488
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4V	TGCA	2 cut(s)	265, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	245, 425, 541
HspAI	GCGC	2 cut(s)	350, 394
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	87, 518
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	4 cut(s)	20, 197, 441, 528
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	2 cut(s)	89, 520
MbiI	CCGCTC	2 cut(s)	132, 222
MboI	GATC	2 cut(s)	87, 518
MboII	GAAGA	2 cut(s)	282, 547
MluCI	AATT	4 cut(s)	80, 331, 446, 480
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	2 cut(s)	296, 495
MnlI	CCTC	4 cut(s)	56, 407, 519, 522
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	2 cut(s)	108, 608
MspI	CCGG	2 cut(s)	184, 515
MspR9I	CCNGG	1 cut(s)	516
Mva1269I	GAATGC	2 cut(s)	177, 213
MwoI	GCNNNNNNNGC	1 cut(s)	437
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	2 cut(s)	87, 518
NlaIII	CATG	3 cut(s)	245, 425, 541
NlaIV	GGNNCC	2 cut(s)	370, 395
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	3 cut(s)	230, 353, 617
PctI	GAATGC	2 cut(s)	177, 213
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	269, 487
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	2 cut(s)	295, 495
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	295, 495
PspN4I	GGNNCC	2 cut(s)	370, 395
PspPI	GGNCC	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	284
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	108, 608
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	87, 518
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	296, 495
ScrFI	CCNGG	1 cut(s)	516
SetI	ASST	3 cut(s)	67, 499, 643
SfaNI	GCATC	1 cut(s)	440
SfoI	GGCGCC	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	80, 331, 446, 480
SsiI	CCGC	2 cut(s)	130, 220
SspDI	GGCGCC	1 cut(s)	393
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	621
TaqI	TCGA	3 cut(s)	257, 285, 335
TasI	AATT	4 cut(s)	80, 331, 446, 480
TfiI	GAWTC	2 cut(s)	269, 487
Tru1I	TTAA	2 cut(s)	108, 608
Tru9I	TTAA	2 cut(s)	108, 608
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	258, 303, 554
TspGWI	ACGGA	1 cut(s)	585
XapI	RAATTY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.