Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000587

Physical Location & Seq

Genomic Coordinates Reverse (-)

2212329 .. 2213598

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAGTGTAGAGCTCTACTGAGAACTGGTGAAATACCATCTGCCCATCAGTTTGATGAAAACTTATTTCTCAAGAAACACTGTGATGCTGCAAGAAATGCTCATAATATCCCTCAGTCACAGTATGCTATCATGAATGAGCATCAAAAGGGGCAAGCAGACACATTCAGCACCAGTTGCCCCTTCTGCAAAACAGTGTATGATTGTTCCAAGGACTTTTTTGCAGATCATTCAAAGCTTCCTAATCAAATTCCTATAAAAGTACCATCCAATCATGATGGAGCTGGAAACTCACCTGTAAAAAGAATTCAAGCTGAAAATGCAGCCTCAAATCCAGTGTCAAAGGTGGCAGTTGCTGCTGATGTCGATGGAGCTTCTAACACTGGAAAGAAATATAGTGAGCATGGGGTTGCAGTAAGGATGGAAGGTGTTGAAATATCCAAGTCTGATTCAGTGAAGTCCAAGTATTCAGGAACATCGGGAAATCTGAACCAAAAAGAAGGGAATTCAATTGTATCTGTTGGAAGTTTCGAGAATGGAAATAGAGCTAGACCTGATTCTGAGCATGTTATTCAAGAAAAAGTCAGTATTCCTTCTGAACTCAATGGTGGCTCTCACATTTTCATATCTTTGATGAAAAACAAGAACCTTTCTTACCTTGGTAATGATGATGATGATTTTGTGAACCCTCCAAAATGGTCAGGGAAGAGCCCACTGTCCAGTGCTACTGAAAAGAAAAGAAAGAATGCAGATGTGTATGGTGAATGTGGCTCATTCGAAATTGATCGGTCACCCTATTCTGCTGCGGCTTCTGTGGATGGACCTAATAAGGCACTACAAAAATTAAGCTTCCCACTAGAAGAATTTTTACCTAGCAAAAAGGGTAAAACTGGGGAACCTGTGCCAGATAATGATGAAACCAACTTCAAAGCTAATGTGAATCCTTTGCCAAATGTTGGTGTTGCATCCACACTAGAACTCATTGAGGTTCCTAATCCTCAATTCCATAAGTTTGTGCTTAATGACAAAACGTTGGTAGGTACTTTTAAAGCTAACAAAAACTGGGCACTTTTTTATGGTGAAGCAAATGGCATGCCCAGATACTATGAAATTATACGATTAAACCAACTTGCCGAACATTTGGATGATGTTTTCTATGTCAATGTATCCCAGGAAGTTCAGTTAGTCTCAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

400

Amino Acids

43.73

Weight (kDa)

6.28

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04980 AT3G04980 AT3G04980 AT5G27240 AT5G27240 AT5G27240
fragaria_vesca	FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_6g04070 FvH4_6g04330 FvH4_6g04680 FvH4_6g04681 FvH4_6g04720 FvH4_6g04760 FvH4_6g04760 FvH4_6g04761 FvH4_6g04761
malus_domestica	MD04G1213700.v1.1 MD12G1228700.v1.1
prunus_persica	Prupe.6G333800_v2.0.a1
pyrus_communis	pycom04g18920 pycom12g21320
rosa_chinensis	RchiOBHm_Chr3g0453151 RchiOBHm_Chr3g0453171 RchiOBHm_Chr3g0453181 RchiOBHm_Chr3g0453201 RchiOBHm_Chr5g0001351
rosa_laevigata	RLG00000025529 RLG00000025530 RLG00000025531 RLG00000025533
rosa_multiflora	Rmu_co8043000.1_g000001 Rmu_co8484983.1_g000001 Rmu_sc0003983.1_g000011 Rmu_sc0007132.1_g000007 Rmu_sc0007132.1_g000009 Rmu_sc0013481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423760 Rroxscaffold_6G00430210 Rroxscaffold_6G00430230 Rroxscaffold_6G00430240 Rroxscaffold_6G00430260
rosa_rugosa	Rorug02G0646800 Rorug02G0646900 Rorug02G0646900 Rorug02G0647000 Rorug02G0647000 Rorug02G0647200 Rorug02G0647200 Rorug02G0647300 Rorug04G0390000
rosa_samantha	Rh3AG049500 Rh3AG049700 Rh3AG049800 Rh3AG050000 Rh3BG050700 Rh3BG050900 Rh3BG051000 Rh3BG051200 Rh3CG050900 Rh3CG051100 Rh3CG051200 Rh3CG051400 Rh3DG051500 Rh3DG051700 Rh3DG051800 Rh3DG052000 Rh5AG010200 Rh5AG010300 Rh5BG013000 Rh5CG011200 Rh5CG011300 Rh5DG010700
rosa_wichuraiana	Rw3G003800 Rw3G003820 Rw3G003830 Rw3G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	956
AciI	CCGC	1 cut(s)	806
AclI	AACGTT	1 cut(s)	1031
AcsI	RAATTY	4 cut(s)	249, 306, 505, 863
AfaI	GTAC	2 cut(s)	264, 1042
AfiI	CCNNNNNNNGG	1 cut(s)	956
AgsI	TTSAA	6 cut(s)	234, 311, 434, 510, 575, 928
AjnI	CCWGG	1 cut(s)	1170
AluBI	AGCT	9 cut(s)	14, 238, 284, 314, 374, 548, 849, 932, 1052
AluI	AGCT	9 cut(s)	14, 238, 284, 314, 374, 548, 849, 932, 1052
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	1192
AlwNI	CAGNNNCTG	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	89, 323, 356, 803
ApoI	RAATTY	4 cut(s)	249, 306, 505, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspS9I	GGNCC	1 cut(s)	821
AsuHPI	GGTGA	5 cut(s)	41, 285, 773, 783, 1091
AsuII	TTCGAA	1 cut(s)	777
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	1069
BanII	GRGCYC	2 cut(s)	16, 713
BarI	GAAGNNNNNNTAC	2 cut(s)	852, 884
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	76, 335, 343, 790
BccI	CCATC	7 cut(s)	46, 54, 272, 274, 362, 415, 812
BciT130I	CCWGG	1 cut(s)	1172
BciVI	GTATCC	1 cut(s)	1177
BcoDI	GTCTC	1 cut(s)	1192
BfaI	CTAG	4 cut(s)	549, 857, 873, 974
BfuI	GTATCC	1 cut(s)	1177
BisI	GCNGC	5 cut(s)	90, 324, 357, 804, 807
BlsI	GCNGC	5 cut(s)	91, 325, 358, 805, 808
Bme1390I	CCNGG	1 cut(s)	1172
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	897, 990
BmrFI	CCNGG	1 cut(s)	1172
BmrI	ACTGGG	2 cut(s)	900, 1072
BmsI	GCATC	3 cut(s)	76, 151, 974
BmuI	ACTGGG	2 cut(s)	900, 1072
Bpu14I	TTCGAA	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	210, 658, 1170
Bsc4I	CCNNNNNNNGG	1 cut(s)	956
Bse1I	ACTGG	7 cut(s)	31, 174, 335, 388, 720, 895, 1067
BseBI	CCWGG	1 cut(s)	1172
BseDI	CCNNGG	3 cut(s)	210, 658, 1170
BseGI	GGATG	5 cut(s)	266, 426, 823, 965, 1150
BseLI	CCNNNNNNNGG	1 cut(s)	956
BseMII	CTCAG	3 cut(s)	11, 128, 552
BseNI	ACTGG	7 cut(s)	31, 174, 335, 388, 720, 895, 1067
BseSI	GKGCMC	1 cut(s)	1069
BseXI	GCAGC	4 cut(s)	76, 335, 343, 790
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	956
BsmAI	GTCTC	1 cut(s)	1192
BsmI	GAATGC	1 cut(s)	751
Bsp119I	TTCGAA	1 cut(s)	777
Bsp1286I	GDGCHC	3 cut(s)	16, 713, 1069
Bsp143I	GATC	2 cut(s)	226, 784
BspACI	CCGC	1 cut(s)	806
BspCNI	CTCAG	3 cut(s)	12, 127, 553
BspHI	TCATGA	2 cut(s)	132, 274
BspLI	GGNNCC	2 cut(s)	897, 990
BspQI	GCTCTTC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	777
BsrI	ACTGG	7 cut(s)	31, 174, 335, 388, 720, 895, 1067
BssECI	CCNNGG	3 cut(s)	210, 658, 1170
BssMI	GATC	2 cut(s)	226, 784
BssT1I	CCWWGG	2 cut(s)	210, 658
Bst2UI	CCWGG	1 cut(s)	1172
Bst4CI	ACNGT	4 cut(s)	83, 123, 196, 717
Bst6I	CTCTTC	1 cut(s)	701
BstAPI	GCANNNNNTGC	3 cut(s)	98, 177, 356
BstBI	TTCGAA	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	156, 1094
BstDEI	CTNAG	3 cut(s)	20, 114, 561
BstEII	GGTNACC	1 cut(s)	789
BstF5I	GGATG	5 cut(s)	266, 426, 823, 965, 1150
BstKTI	GATC	2 cut(s)	229, 787
BstMAI	GTCTC	1 cut(s)	1192
BstMBI	GATC	2 cut(s)	226, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 177, 186, 320, 356
BstNI	CCWGG	1 cut(s)	1172
BstNSI	RCATGY	2 cut(s)	569, 1096
BstPI	GGTNACC	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	1170
BstSLI	GKGCMC	1 cut(s)	1069
BstV1I	GCAGC	4 cut(s)	76, 335, 343, 790
BsuI	GTATCC	1 cut(s)	1177
BtsCI	GGATG	5 cut(s)	266, 426, 823, 965, 1150
BtsIMutI	CAGTG	7 cut(s)	79, 201, 342, 381, 459, 713, 727
Cac8I	GCNNGC	2 cut(s)	156, 1094
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	2 cut(s)	132, 274
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	263, 1041
CviAII	CATG	5 cut(s)	133, 275, 404, 566, 1093
CviQI	GTAC	2 cut(s)	263, 1041
DdeI	CTNAG	3 cut(s)	20, 114, 561
DpnI	GATC	2 cut(s)	228, 786
DpnII	GATC	2 cut(s)	226, 784
DraI	TTTAAA	1 cut(s)	1048
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	210, 658
Eco24I	GRGCYC	2 cut(s)	16, 713
Eco47I	GGWCC	1 cut(s)	821
Eco53kI	GAGCTC	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	789
EcoRI	GAATTC	2 cut(s)	306, 505
EcoRII	CCWGG	1 cut(s)	1170
EcoT14I	CCWWGG	2 cut(s)	210, 658
EcoT38I	GRGCYC	2 cut(s)	16, 713
ErhI	CCWWGG	2 cut(s)	210, 658
FaeI	CATG	5 cut(s)	136, 278, 407, 569, 1096
FatI	CATG	5 cut(s)	132, 274, 403, 565, 1092
Fnu4HI	GCNGC	5 cut(s)	90, 324, 357, 804, 807
FokI	GGATG	5 cut(s)	253, 433, 830, 952, 1157
FriOI	GRGCYC	2 cut(s)	16, 713
Fsp4HI	GCNGC	5 cut(s)	90, 324, 357, 804, 807
FspBI	CTAG	4 cut(s)	549, 857, 873, 974
GluI	GCNGC	5 cut(s)	90, 324, 357, 804, 807
Hin1II	CATG	5 cut(s)	136, 278, 407, 569, 1096
HindIII	AAGCTT	2 cut(s)	236, 847
HinfI	GANTC	3 cut(s)	449, 557, 940
HphI	GGTGA	5 cut(s)	41, 285, 773, 783, 1091
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	4 cut(s)	448, 489, 562, 598
Hpy188III	TCNNGA	7 cut(s)	73, 133, 275, 471, 480, 532, 575
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	4 cut(s)	193, 419, 494, 603
HpyCH4III	ACNGT	4 cut(s)	83, 123, 196, 717
HpyCH4IV	ACGT	1 cut(s)	1031
HpyCH4V	TGCA	7 cut(s)	92, 189, 224, 323, 413, 749, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 177, 186, 320, 356
HpyF3I	CTNAG	3 cut(s)	20, 114, 561
HpySE526I	ACGT	1 cut(s)	1031
Hsp92II	CATG	5 cut(s)	136, 278, 407, 569, 1096
Kzo9I	GATC	2 cut(s)	226, 784
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	2 cut(s)	281, 371
Lsp1109I	GCAGC	4 cut(s)	76, 335, 343, 790
LweI	GCATC	3 cut(s)	76, 151, 974
MaeI	CTAG	4 cut(s)	549, 857, 873, 974
MaeII	ACGT	1 cut(s)	1031
MaeIII	GTNAC	2 cut(s)	117, 789
MalI	GATC	2 cut(s)	228, 786
MboI	GATC	2 cut(s)	226, 784
MboII	GAAGA	2 cut(s)	718, 872
MfeI	CAATTG	2 cut(s)	510, 1191
MhlI	GDGCHC	3 cut(s)	16, 713, 1069
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	5 cut(s)	123, 337, 699, 979, 1008
MseI	TTAA	4 cut(s)	845, 1020, 1047, 1121
MslI	CAYNNNNRTG	2 cut(s)	84, 1143
MspR9I	CCNGG	1 cut(s)	1172
MunI	CAATTG	2 cut(s)	510, 1191
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	1172
MwoI	GCNNNNNNNGC	5 cut(s)	98, 177, 186, 320, 356
NdeII	GATC	2 cut(s)	226, 784
NlaIII	CATG	5 cut(s)	136, 278, 407, 569, 1096
NlaIV	GGNNCC	2 cut(s)	897, 990
NmuCI	GTSAC	2 cut(s)	117, 789
NspI	RCATGY	2 cut(s)	569, 1096
NspV	TTCGAA	1 cut(s)	777
PaeI	GCATGC	1 cut(s)	1096
PagI	TCATGA	2 cut(s)	132, 274
PciSI	GCTCTTC	1 cut(s)	701
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	449, 557, 940
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	5 cut(s)	91, 325, 358, 805, 808
Psp124BI	GAGCTC	1 cut(s)	16
Psp1406I	AACGTT	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	1170
PspEI	GGTNACC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	1170
PspN4I	GGNNCC	2 cut(s)	897, 990
PspPI	GGNCC	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	638, 670
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	264, 1042
RsaNI	GTAC	2 cut(s)	263, 1041
RseI	CAYNNNNRTG	2 cut(s)	84, 1143
SacI	GAGCTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	4 cut(s)	845, 1020, 1047, 1121
SatI	GCNGC	5 cut(s)	90, 324, 357, 804, 807
Sau3AI	GATC	2 cut(s)	226, 784
Sau96I	GGNCC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	1172
SduI	GDGCHC	3 cut(s)	16, 713, 1069
SfaNI	GCATC	3 cut(s)	76, 151, 974
SfuI	TTCGAA	1 cut(s)	777
SinI	GGWCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	2 cut(s)	84, 1143
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	1096
SsiI	CCGC	1 cut(s)	806
SspMI	CTAG	4 cut(s)	549, 857, 873, 974
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	1170
StyI	CCWWGG	2 cut(s)	210, 658
TaaI	ACNGT	4 cut(s)	83, 123, 196, 717
TaiI	ACGT	1 cut(s)	1034
TaqI	TCGA	3 cut(s)	366, 531, 777
TaqII	GACCGA	1 cut(s)	777
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	3 cut(s)	449, 557, 940
Tru1I	TTAA	4 cut(s)	845, 1020, 1047, 1121
Tru9I	TTAA	4 cut(s)	845, 1020, 1047, 1121
TscAI	CASTG	7 cut(s)	86, 201, 342, 388, 459, 720, 727
TseFI	GTSAC	2 cut(s)	117, 789
TseI	GCWGC	4 cut(s)	89, 323, 356, 803
Tsp45I	GTSAC	2 cut(s)	117, 789
TspDTI	ATGAA	7 cut(s)	17, 72, 149, 613, 650, 930, 1122
TspRI	CASTG	7 cut(s)	86, 201, 342, 388, 459, 720, 727
Van91I	CCANNNNNTGG	1 cut(s)	956
VpaK11BI	GGWCC	1 cut(s)	821
XapI	RAATTY	4 cut(s)	249, 306, 505, 863
XceI	RCATGY	2 cut(s)	569, 1096
XspI	CTAG	4 cut(s)	549, 857, 873, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.