Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000587

Physical Location & Seq

Genomic Coordinates Reverse (-)

75673541 .. 75677541

Gene Structure 4001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0646900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAGTTGTTACAATGGGTGCGCCAAAAATTTCAGCACACTAGCATTGAACCTCTCAAGGATCTCAGTATTGGGAATCCTTGTATCTGCCTTTCAGCTCAGCCATCAGATGATGACCAAGATGCCTATACAAAGCCAACCTTCCGTTACAGATATGGATCTACATTCCTAGAGCCACCTAGGAAGGACCAAAAGAAATCTTTTTCTGAATCTGAAGACAGGAGAGAAGAAGAAACATCTGTTATTGTCTCAGAGCTGTTTCATGGCTTTCTCACCATTGGAACTCTTGGCTCGGAAACAAGTGCCAATGAACCAGCAACACCAACGTTTGCAACACCTTTAGAGAACCTAACTGAGAAAAAGACAGAGGTCACAGAAAATGACTTGAAGCTCATCAACTATGAGCTAGAGAGGTTTCTTGAGGCTGAGACAAGGGAAGATCCATCATCAGCGAGGGACAGTCATGTTAGCAGTATTACACTCAGTGGCATGCAAATGGAGGACTCTGAAGATGAAGAGTACTGTGCAGCAACAGTGGTTTGTCCCCTCCAAGGATATCTGCTTGGGTCCTCAGTTGAATTGCCAGAAATGAGAACAGAAGCAAAGAAAGAAAAGGCATCACTACAAGAGCTGTTTGATAGGACAAAAGTGACTGAAAATTTCGAGAGAAGTGAGGAGAAAGATCCCAAGCAAAAACGTAAATCTGCCATGGATTCCATGAAGAAGATAATAAAAAAACTCTATGCTTCTTCCAAGAGCTCCACTTCTACTAGTGGTCATTCAAATGATCCTGTTTCCACCATGAAGAAACTTGGTGAGGCATCTGATTCTGTTTCAACCAAGAAGAAACCCCATAAGGTTGGGTTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

290

Amino Acids

32.69

Weight (kDa)

5.31

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04980 AT3G04980 AT3G04980 AT5G27240 AT5G27240 AT5G27240
fragaria_vesca	FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_6g04070 FvH4_6g04330 FvH4_6g04680 FvH4_6g04681 FvH4_6g04720 FvH4_6g04760 FvH4_6g04760 FvH4_6g04761 FvH4_6g04761
malus_domestica	MD04G1213700.v1.1 MD12G1228700.v1.1
prunus_persica	Prupe.6G333800_v2.0.a1
pyrus_communis	pycom04g18920 pycom12g21320
rosa_chinensis	RchiOBHm_Chr3g0453151 RchiOBHm_Chr3g0453171 RchiOBHm_Chr3g0453181 RchiOBHm_Chr3g0453201 RchiOBHm_Chr5g0001351
rosa_laevigata	RLG00000025529 RLG00000025530 RLG00000025531 RLG00000025533
rosa_multiflora	Rmu_co8043000.1_g000001 Rmu_co8484983.1_g000001 Rmu_sc0003983.1_g000011 Rmu_sc0007132.1_g000007 Rmu_sc0007132.1_g000009 Rmu_sc0013481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423760 Rroxscaffold_6G00430210 Rroxscaffold_6G00430230 Rroxscaffold_6G00430240 Rroxscaffold_6G00430260
rosa_rugosa	Rorug02G0646800 Rorug02G0646900 Rorug02G0646900 Rorug02G0647000 Rorug02G0647000 Rorug02G0647200 Rorug02G0647200 Rorug02G0647300 Rorug04G0390000
rosa_samantha	Rh3AG049500 Rh3AG049700 Rh3AG049800 Rh3AG050000 Rh3BG050700 Rh3BG050900 Rh3BG051000 Rh3BG051200 Rh3CG050900 Rh3CG051100 Rh3CG051200 Rh3CG051400 Rh3DG051500 Rh3DG051700 Rh3DG051800 Rh3DG052000 Rh5AG010200 Rh5AG010300 Rh5BG013000 Rh5CG011200 Rh5CG011300 Rh5DG010700
rosa_wichuraiana	Rw3G003800 Rw3G003820 Rw3G003830 Rw3G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	5 cut(s)	69, 166, 434, 677, 782
AcsI	RAATTY	2 cut(s)	29, 658
AcuI	CTGAAG	2 cut(s)	234, 528
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	50, 388, 578, 783, 837
AhlI	ACTAGT	1 cut(s)	770
AluBI	AGCT	6 cut(s)	98, 256, 391, 406, 631, 759
AluI	AGCT	6 cut(s)	98, 256, 391, 406, 631, 759
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	2 cut(s)	253, 422
AlwI	GGATC	5 cut(s)	69, 166, 434, 677, 782
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	29, 658
AspA2I	CCTAGG	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	187, 567
AsuHPI	GGTGA	2 cut(s)	265, 827
AvaII	GGWCC	2 cut(s)	187, 567
AvrII	CCTAGG	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	2 cut(s)	112, 451
BcoDI	GTCTC	2 cut(s)	253, 422
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	5 cut(s)	42, 170, 180, 407, 771
BisI	GCNGC	1 cut(s)	528
BlnI	CCTAGG	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	521
Bme18I	GGWCC	2 cut(s)	187, 567
BmgT120I	GGNCC	2 cut(s)	187, 567
BmiI	GGNNCC	2 cut(s)	568, 866
BmsI	GCATC	3 cut(s)	112, 626, 830
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	41, 440
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	179, 550, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	179, 550, 708
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	7 cut(s)	79, 113, 264, 345, 417, 496, 585
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	761
BslFI	GGGAC	2 cut(s)	470, 528
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	253, 422
BsmFI	GGGAC	2 cut(s)	470, 528
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	5 cut(s)	61, 158, 439, 682, 787
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	708
BspCNI	CTCAG	7 cut(s)	78, 112, 263, 346, 418, 495, 584
BspLI	GGNNCC	2 cut(s)	568, 866
BspPI	GGATC	5 cut(s)	69, 166, 434, 677, 782
BssECI	CCNNGG	3 cut(s)	179, 550, 708
BssMI	GATC	5 cut(s)	61, 158, 439, 682, 787
BssT1I	CCWWGG	3 cut(s)	179, 550, 708
Bst4CI	ACNGT	3 cut(s)	461, 524, 535
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
BstDSI	CCRYGG	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	5 cut(s)	64, 161, 442, 685, 790
BstMAI	GTCTC	2 cut(s)	253, 422
BstMBI	GATC	5 cut(s)	61, 158, 439, 682, 787
BstNSI	RCATGY	1 cut(s)	493
BstPAI	GACNNNNGTC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	4 cut(s)	61, 158, 439, 682
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	4 cut(s)	61, 158, 439, 682
BtgI	CCRYGG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	490, 540
Cac8I	GCNNGC	1 cut(s)	491
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	187, 567
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	6 cut(s)	263, 464, 490, 709, 718, 802
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
DpnI	GATC	5 cut(s)	63, 160, 441, 684, 789
DpnII	GATC	5 cut(s)	61, 158, 439, 682, 787
DraIII	CACNNNGTG	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	3 cut(s)	179, 550, 708
Eco24I	GRGCYC	1 cut(s)	761
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	187, 567
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	2 cut(s)	234, 528
EcoICRI	GAGCTC	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	3 cut(s)	179, 550, 708
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	3 cut(s)	179, 550, 708
FaeI	CATG	6 cut(s)	266, 467, 493, 712, 721, 805
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	2 cut(s)	470, 528
FatI	CATG	6 cut(s)	262, 463, 489, 708, 717, 801
Fnu4HI	GCNGC	1 cut(s)	528
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	5 cut(s)	42, 170, 180, 407, 771
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	528
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	6 cut(s)	266, 467, 493, 712, 721, 805
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	5 cut(s)	76, 209, 503, 713, 827
HphI	GGTGA	2 cut(s)	265, 827
Hpy188I	TCNGA	7 cut(s)	109, 208, 214, 253, 295, 508, 826
Hpy188III	TCNNGA	2 cut(s)	419, 664
HpyAV	CCTTC	2 cut(s)	151, 178
HpyCH4III	ACNGT	3 cut(s)	461, 524, 535
HpyCH4IV	ACGT	2 cut(s)	326, 697
HpyCH4V	TGCA	4 cut(s)	4, 332, 493, 527
HpyF3I	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
HpySE526I	ACGT	2 cut(s)	326, 697
Hsp92II	CATG	6 cut(s)	266, 467, 493, 712, 721, 805
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	61, 158, 439, 682, 787
LmnI	GCTCC	1 cut(s)	764
LpnPI	CCDG	4 cut(s)	205, 327, 597, 804
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	3 cut(s)	112, 626, 830
MaeI	CTAG	5 cut(s)	42, 170, 180, 407, 771
MaeII	ACGT	2 cut(s)	326, 697
MaeIII	GTNAC	4 cut(s)	9, 146, 370, 649
MalI	GATC	5 cut(s)	63, 160, 441, 684, 789
MboI	GATC	5 cut(s)	61, 158, 439, 682, 787
MflI	RGATCY	4 cut(s)	61, 158, 439, 682
MhlI	GDGCHC	1 cut(s)	761
MluCI	AATT	3 cut(s)	29, 578, 658
MlyI	GAGTC	1 cut(s)	497
MslI	CAYNNNNRTG	2 cut(s)	494, 783
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	5 cut(s)	61, 158, 439, 682, 787
NlaIII	CATG	6 cut(s)	266, 467, 493, 712, 721, 805
NlaIV	GGNNCC	2 cut(s)	568, 866
NmuCI	GTSAC	2 cut(s)	370, 649
NspI	RCATGY	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	76, 209, 713, 827
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	567
PshAI	GACNNNNGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	568, 866
PspPI	GGNCC	2 cut(s)	187, 567
PspPPI	RGGWCCY	1 cut(s)	567
PsuI	RGATCY	4 cut(s)	61, 158, 439, 682
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	494, 783
SacI	GAGCTC	1 cut(s)	761
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	5 cut(s)	61, 158, 439, 682, 787
Sau96I	GGNCC	2 cut(s)	187, 567
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	3 cut(s)	112, 626, 830
SinI	GGWCC	2 cut(s)	187, 567
SmiMI	CAYNNNNRTG	2 cut(s)	494, 783
SmlI	CTYRAG	2 cut(s)	56, 419
SmoI	CTYRAG	2 cut(s)	56, 419
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	3 cut(s)	29, 578, 658
SspMI	CTAG	5 cut(s)	42, 170, 180, 407, 771
SstI	GAGCTC	1 cut(s)	761
StyI	CCWWGG	3 cut(s)	179, 550, 708
TaaI	ACNGT	3 cut(s)	461, 524, 535
TaiI	ACGT	2 cut(s)	329, 700
TaqI	TCGA	1 cut(s)	663
TasI	AATT	3 cut(s)	29, 578, 658
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	4 cut(s)	76, 209, 713, 827
TscAI	CASTG	2 cut(s)	490, 540
TseFI	GTSAC	2 cut(s)	370, 649
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	370, 649
TspDTI	ATGAA	5 cut(s)	251, 324, 528, 734, 818
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	490, 540
VpaK11BI	GGWCC	2 cut(s)	187, 567
XapI	RAATTY	2 cut(s)	29, 658
XceI	RCATGY	1 cut(s)	493
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	5 cut(s)	42, 170, 180, 407, 771
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.