Rroxscaffold_6G00423760

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000587
Physical Location & Seq
Reverse (-)
44825835 .. 44855554
29720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423760.1

Sequence Viewer

Length: 987 bp
ATGCGACCTCAAATCCTGTGTCAAAGGCGGGAGTTGCTGCTGATGTTGATGGAGCTTCTAACACTCGAAAAGAAAAATAGTGAGCATGGGGTTGCAATAAGGAAGGAGGGTGTTGAAATATCGAAGTCCGGTTCGGTGAAGTCCAAGGAGCCGCTAAGTCATTTTAGGAATGCGAATGCCTCCCCTTTTGATATGATGATCTTAGCAAGTATTTTTAAAGCTAATCAAACATGGGCTCTTTTTGATGATGAAGCAGATGGCATGCCCAGGTACTATGCCTTTGTCAAGAAAGTATTACACACCCCGGGATTTAAGCTGAAAATCATCTGGCTAGATGCCAATCCAGATAACCTAGGTGAGATTGATTGGAACGAAAAGGAGTTGCCAGTTGCTTGTGGTAGGTTCAAACTTGGGAGTACTGAAGAAATTACAGATCATCGTATGTTTTCTCATCAGGTACATTGCAGAAAAGGCAGGGGTAAAAGTTCTTTTCTGGTATATCCTAGGAAGGGTGAAACTTGGGCCCTCTACAAGAACTGGGATATTGGATGGAGTTCTGAGCCTGAAAAGCACATACCATACAAATATGAATTTGTTGAAGTCCTGTCAGATTTTGTTGATGACATTGGAACTGAAGTTGCTTCTTTAGCCAAAGTAAAAGGATTTGTCAGTCTGTTTGAGCAAAAGAAGCAGAGTGGTGATATCTTGCGTCGAATTCCTCCTAATGAGCTATATAGATTTTCGCATCGAATTCCTTCTTTCAAGATGACTGGGAATGAACGAGATGATGTTCCGAAAGGGTGCTTACCAACTAATGTTATTCTAATCGATAATCTTGAGTTGTCACCGAATTATCTCCTAGTTGAAAATGGTTTCTGTCACGAACGTTTGTCTATCGGTGACAATGAAGTGATGACAACAGTGGGCGGTGGCAATGGACGCGGGCGGTGGCACAACCATAATGGAGGTAAATTTGATGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

328

Amino Acids

37.47

Weight (kDa)

7.17

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3444 PF11926 59 - 260 5.6e-75 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 942
AciI CCGC 5 cut(s) 28, 152, 927, 942, 946
AclI AACGTT 1 cut(s) 886
AcsI RAATTY 4 cut(s) 590, 714, 750, 971
AcuI CTGAAG 2 cut(s) 441, 654
AfaI GTAC 3 cut(s) 272, 418, 459
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 5 cut(s) 116, 406, 599, 763, 866
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 4 cut(s) 55, 221, 316, 730
AluI AGCT 4 cut(s) 55, 221, 316, 730
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 522
ApaI GGGCCC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 4 cut(s) 590, 714, 750, 971
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 754
AspA2I CCTAGG 2 cut(s) 352, 503
AspS9I GGNCC 2 cut(s) 522, 523
AsuC2I CCSGG 2 cut(s) 305, 306
AsuHPI GGTGA 6 cut(s) 148, 368, 524, 710, 837, 911
AvaI CYCGRG 1 cut(s) 304
AvrII CCTAGG 2 cut(s) 352, 503
BaeGI GKGCMC 1 cut(s) 526
BanII GRGCYC 2 cut(s) 238, 526
BbvI GCAGC 1 cut(s) 24
BccI CCATC 4 cut(s) 43, 251, 543, 974
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 2 cut(s) 305, 306
BfaI CTAG 4 cut(s) 332, 353, 504, 860
BisI GCNGC 2 cut(s) 38, 152
BlnI CCTAGG 2 cut(s) 352, 503
BlsI GCNGC 2 cut(s) 39, 153
BmcAI AGTACT 1 cut(s) 418
Bme1390I CCNGG 3 cut(s) 268, 305, 306
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 522, 523
BmiI GGNNCC 2 cut(s) 150, 524
BmrFI CCNGG 3 cut(s) 268, 305, 306
BmrI ACTGGG 2 cut(s) 547, 780
BmsI GCATC 2 cut(s) 325, 754
BmuI ACTGGG 2 cut(s) 547, 780
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 2 cut(s) 305, 306
Bsa29I ATCGAT 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 6 cut(s) 144, 266, 303, 304, 352, 503
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 3 cut(s) 386, 542, 775
Bse3DI GCAATG 2 cut(s) 460, 940
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 268
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 6 cut(s) 144, 266, 303, 304, 352, 503
BseGI GGATG 1 cut(s) 554
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 2 cut(s) 460, 940
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 386, 542, 775
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 942
BshFI GGCC 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 828
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 129, 305
BslI CCNNNNNNNGG 1 cut(s) 509
BsmI GAATGC 2 cut(s) 175, 181
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 304
Bsp120I GGGCCC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 238, 526
Bsp143I GATC 2 cut(s) 198, 433
BspACI CCGC 5 cut(s) 28, 152, 927, 942, 946
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 1 cut(s) 550
BspDI ATCGAT 1 cut(s) 828
BspFNI CGCG 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 150, 524
BsrDI GCAATG 2 cut(s) 460, 940
BsrI ACTGG 3 cut(s) 386, 542, 775
BssECI CCNNGG 6 cut(s) 144, 266, 303, 304, 352, 503
BssMI GATC 2 cut(s) 198, 433
BssT1I CCWWGG 3 cut(s) 144, 352, 503
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 263, 944
BstDEI CTNAG 3 cut(s) 155, 202, 558
BstF5I GGATG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 942
BstKTI GATC 2 cut(s) 201, 436
BstMBI GATC 2 cut(s) 198, 433
BstMWI GCNNNNNNNGC 6 cut(s) 34, 471, 568, 647, 688, 939
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 266, 303, 304
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 1 cut(s) 942
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 828
BsuRI GGCC 1 cut(s) 524
BsuTUI ATCGAT 1 cut(s) 828
BtsCI GGATG 1 cut(s) 554
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 2 cut(s) 263, 944
Cfr13I GGNCC 2 cut(s) 522, 523
Cfr9I CCCGGG 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 828
CseI GACGC 2 cut(s) 698, 948
Csp6I GTAC 3 cut(s) 271, 417, 458
CviAII CATG 3 cut(s) 86, 231, 262
CviQI GTAC 3 cut(s) 271, 417, 458
DdeI CTNAG 3 cut(s) 155, 202, 558
DpnI GATC 2 cut(s) 200, 435
DpnII GATC 2 cut(s) 198, 433
DraI TTTAAA 1 cut(s) 217
Eco130I CCWWGG 3 cut(s) 144, 352, 503
Eco24I GRGCYC 2 cut(s) 238, 526
Eco32I GATATC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 441, 654
Eco88I CYCGRG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 523
EcoRI GAATTC 2 cut(s) 714, 750
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 3 cut(s) 144, 352, 503
EcoT38I GRGCYC 2 cut(s) 238, 526
ErhI CCWWGG 3 cut(s) 144, 352, 503
FaeI CATG 3 cut(s) 89, 234, 265
FatI CATG 3 cut(s) 85, 230, 261
FauI CCCGC 2 cut(s) 21, 935
Fnu4HI GCNGC 2 cut(s) 38, 152
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 2 cut(s) 238, 526
Fsp4HI GCNGC 2 cut(s) 38, 152
FspBI CTAG 4 cut(s) 332, 353, 504, 860
GluI GCNGC 2 cut(s) 38, 152
HaeIII GGCC 1 cut(s) 524
HapII CCGG 2 cut(s) 129, 305
HgaI GACGC 2 cut(s) 698, 948
Hin1II CATG 3 cut(s) 89, 234, 265
HpaII CCGG 2 cut(s) 129, 305
HphI GGTGA 6 cut(s) 148, 368, 524, 710, 837, 911
Hpy188I TCNGA 3 cut(s) 559, 610, 795
Hpy188III TCNNGA 5 cut(s) 286, 344, 763, 836, 881
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 3 cut(s) 97, 502, 765
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 2 cut(s) 95, 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 471, 568, 647, 688, 939
HpyF3I CTNAG 3 cut(s) 155, 202, 558
HpySE526I ACGT 1 cut(s) 886
Hsp92II CATG 3 cut(s) 89, 234, 265
Kzo9I GATC 2 cut(s) 198, 433
LmnI GCTCC 2 cut(s) 52, 148
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 325, 754
MaeI CTAG 4 cut(s) 332, 353, 504, 860
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 3 cut(s) 843, 878, 899
MalI GATC 2 cut(s) 200, 435
MboI GATC 2 cut(s) 198, 433
MboII GAAGA 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 238, 526
MluCI AATT 6 cut(s) 426, 590, 714, 750, 850, 971
MnlI CCTC 6 cut(s) 18, 100, 190, 536, 729, 959
MroXI GAANNNNTTC 1 cut(s) 754
MseI TTAA 2 cut(s) 216, 312
MspI CCGG 2 cut(s) 129, 305
MspR9I CCNGG 3 cut(s) 268, 305, 306
Mva1269I GAATGC 2 cut(s) 175, 181
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 942
MwoI GCNNNNNNNGC 6 cut(s) 34, 471, 568, 647, 688, 939
NciI CCSGG 2 cut(s) 305, 306
NdeII GATC 2 cut(s) 198, 433
NlaIII CATG 3 cut(s) 89, 234, 265
NlaIV GGNNCC 2 cut(s) 150, 524
NmuCI GTSAC 3 cut(s) 843, 878, 899
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PctI GAATGC 2 cut(s) 175, 181
PdmI GAANNNNTTC 1 cut(s) 754
PkrI GCNGC 2 cut(s) 39, 153
Psp1406I AACGTT 1 cut(s) 886
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 150, 524
PspOMI GGGCCC 1 cut(s) 522
PspPI GGNCC 2 cut(s) 522, 523
RsaI GTAC 3 cut(s) 272, 418, 459
RsaNI GTAC 3 cut(s) 271, 417, 458
SaqAI TTAA 2 cut(s) 216, 312
SatI GCNGC 2 cut(s) 38, 152
Sau3AI GATC 2 cut(s) 198, 433
Sau96I GGNCC 2 cut(s) 522, 523
ScaI AGTACT 1 cut(s) 418
ScrFI CCNGG 3 cut(s) 268, 305, 306
SduI GDGCHC 2 cut(s) 238, 526
SfaNI GCATC 2 cut(s) 325, 754
SmaI CCCGGG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
SphI GCATGC 1 cut(s) 265
Sse9I AATT 6 cut(s) 426, 590, 714, 750, 850, 971
SsiI CCGC 5 cut(s) 28, 152, 927, 942, 946
SspMI CTAG 4 cut(s) 332, 353, 504, 860
StyD4I CCNGG 3 cut(s) 266, 303, 304
StyI CCWWGG 3 cut(s) 144, 352, 503
TaaI ACNGT 1 cut(s) 922
TaiI ACGT 1 cut(s) 889
TaqI TCGA 5 cut(s) 66, 122, 712, 748, 828
TasI AATT 6 cut(s) 426, 590, 714, 750, 850, 971
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 216, 312
Tru9I TTAA 2 cut(s) 216, 312
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 3 cut(s) 843, 878, 899
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 3 cut(s) 843, 878, 899
TspDTI ATGAA 4 cut(s) 264, 603, 792, 921
TspMI CCCGGG 1 cut(s) 304
TspRI CASTG 1 cut(s) 927
XapI RAATTY 4 cut(s) 590, 714, 750, 971
XceI RCATGY 1 cut(s) 265
XmaI CCCGGG 1 cut(s) 304
XmaJI CCTAGG 2 cut(s) 352, 503
XmnI GAANNNNTTC 1 cut(s) 754
XspI CTAG 4 cut(s) 332, 353, 504, 860
ZrmI AGTACT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.