Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007132.1

Orthogroup ID

OG0000587

Physical Location & Seq

Genomic Coordinates Forward (+)

38768 .. 39919

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007132.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggattgcaacaaagaggaggcaatcaaggcaatgcaacttgctgaaagaaagatgcgggataatgattttacaggagcaaggaagttggcacagaaggctcaacaactcttcccggggcttgagaatatttctcaattacttgcagtatgtgaagttcattgttcagctgaaaataagctagatggcagtgaaatggactggtatgggattctgcaggttcaaagattttctcatgaggcaatcatcaagaaacaattcagaaaactcgggctgttacttaatcctgataagaacaaggttgctggtgcggaggctgcttttaagctgatcggggaagcaaatgcagtgctggacgaccgaggaagacattttagatatgacatgaagtgtagagctcttctgagaactggtgtaatacaatcatcagctcatcagtttaatgaaaatttatttgtcaggaaacactgtgatgctgcaaaaaatgttcagaatattcccgagtcacagtgtgctagcatgaatgaacttcaaaagaggcaagcagacacattttgcacttgttgtcccttctgtaaaacagtgtatccatgtgccaaagactcggcaaatcgattgttacgttgtcaaagatgtcgaaggcttttcattgcctctgattgtggtattcaaggggtgcacttagaaactctcaggaaccagtttgcaaatcatacagaacttcctaaccagattcctataaaagtagtctcaaatcatggtggaactggaaatctacctgttacaagatttcaagccggaaatgcagcctcaaatcctgtgtcaaaggcgggagttgctgctgatgttgatggagcttctaacactcaaaagaaaaatagtgagcatggggttgcagtaaggaaggagggtgttgaaatatccaagtctggttcagtgaagtccaaggagtcaggaccttcgagaaatctgaataaaaaaagagggaagtcaattgaatctgttggaagtttcaagactggaaagggagctagacctgattctgagcattttgttaaagaaaaagtcggtattccttctgaactcgatggaggccctcacctttgcatatcttcgatgaaagagaagaacctttcttacattggtaatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

384

Amino Acids

42.27

Weight (kDa)

9.22

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04980 AT3G04980 AT3G04980 AT5G27240 AT5G27240 AT5G27240
fragaria_vesca	FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_6g04070 FvH4_6g04330 FvH4_6g04680 FvH4_6g04681 FvH4_6g04720 FvH4_6g04760 FvH4_6g04760 FvH4_6g04761 FvH4_6g04761
malus_domestica	MD04G1213700.v1.1 MD12G1228700.v1.1
prunus_persica	Prupe.6G333800_v2.0.a1
pyrus_communis	pycom04g18920 pycom12g21320
rosa_chinensis	RchiOBHm_Chr3g0453151 RchiOBHm_Chr3g0453171 RchiOBHm_Chr3g0453181 RchiOBHm_Chr3g0453201 RchiOBHm_Chr5g0001351
rosa_laevigata	RLG00000025529 RLG00000025530 RLG00000025531 RLG00000025533
rosa_multiflora	Rmu_co8043000.1_g000001 Rmu_co8484983.1_g000001 Rmu_sc0003983.1_g000011 Rmu_sc0007132.1_g000007 Rmu_sc0007132.1_g000009 Rmu_sc0013481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423760 Rroxscaffold_6G00430210 Rroxscaffold_6G00430230 Rroxscaffold_6G00430240 Rroxscaffold_6G00430260
rosa_rugosa	Rorug02G0646800 Rorug02G0646900 Rorug02G0646900 Rorug02G0647000 Rorug02G0647000 Rorug02G0647200 Rorug02G0647200 Rorug02G0647300 Rorug04G0390000
rosa_samantha	Rh3AG049500 Rh3AG049700 Rh3AG049800 Rh3AG050000 Rh3BG050700 Rh3BG050900 Rh3BG051000 Rh3BG051200 Rh3CG050900 Rh3CG051100 Rh3CG051200 Rh3CG051400 Rh3DG051500 Rh3DG051700 Rh3DG051800 Rh3DG052000 Rh5AG010200 Rh5AG010300 Rh5BG013000 Rh5CG011200 Rh5CG011300 Rh5DG010700
rosa_wichuraiana	Rw3G003800 Rw3G003820 Rw3G003830 Rw3G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	3 cut(s)	58, 311, 830
AcsI	RAATTY	1 cut(s)	448
AdeI	CACNNNGTG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	224, 533, 671, 794, 917, 998, 1015
AluBI	AGCT	7 cut(s)	170, 181, 328, 398, 431, 857, 1031
AluI	AGCT	7 cut(s)	170, 181, 328, 398, 431, 857, 1031
Alw21I	GWGCWC	2 cut(s)	400, 681
Alw26I	GTCTC	1 cut(s)	754
Alw44I	GTGCAC	1 cut(s)	677
Ama87I	CYCGRG	3 cut(s)	115, 269, 500
AoxI	GGCC	1 cut(s)	1093
ApaLI	GTGCAC	1 cut(s)	677
ApeKI	GCWGC	4 cut(s)	317, 476, 806, 839
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	956, 1094
AsuC2I	CCSGG	2 cut(s)	116, 117
AsuHPI	GGTGA	1 cut(s)	1091
AsuNHI	GCTAGC	1 cut(s)	515
AvaI	CYCGRG	3 cut(s)	115, 269, 500
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	681
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	400, 681
BbvI	GCAGC	4 cut(s)	304, 463, 818, 826
BccI	CCATC	3 cut(s)	179, 845, 1082
BciVI	GTATCC	1 cut(s)	597
BcnI	CCSGG	2 cut(s)	116, 117
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	3 cut(s)	182, 516, 1032
BfmI	CTRYAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	597
BisI	GCNGC	4 cut(s)	318, 477, 807, 840
BlsI	GCNGC	4 cut(s)	319, 478, 808, 841
Bme1390I	CCNGG	2 cut(s)	116, 117
Bme18I	GGWCC	1 cut(s)	956
BmeT110I	CYCGRG	3 cut(s)	115, 269, 500
BmgT120I	GGNCC	2 cut(s)	956, 1094
BmiI	GGNNCC	1 cut(s)	698
BmrFI	CCNGG	2 cut(s)	116, 117
BmsI	GCATC	2 cut(s)	45, 463
BmtI	GCTAGC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	116, 117
Bsa29I	ATCGAT	1 cut(s)	613
BsaJI	CCNNGG	4 cut(s)	115, 116, 361, 945
Bse1I	ACTGG	5 cut(s)	206, 415, 700, 772, 1024
Bse3DI	GCAATG	2 cut(s)	39, 648
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	4 cut(s)	115, 116, 361, 945
BseMI	GCAATG	2 cut(s)	39, 648
BseMII	CTCAG	3 cut(s)	395, 706, 1035
BseNI	ACTGG	5 cut(s)	206, 415, 700, 772, 1024
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	4 cut(s)	304, 463, 818, 826
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	1095
BshVI	ATCGAT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	400, 681
BsiHKCI	CYCGRG	3 cut(s)	115, 269, 500
BsiSI	CCGG	2 cut(s)	116, 798
BslFI	GGGAC	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	1095
BsoBI	CYCGRG	3 cut(s)	115, 269, 500
Bsp1286I	GDGCHC	2 cut(s)	400, 681
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	58, 311, 830
BspANI	GGCC	1 cut(s)	1095
BspCNI	CTCAG	3 cut(s)	396, 705, 1036
BspDI	ATCGAT	1 cut(s)	613
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	698
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	208
BspOI	GCTAGC	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	39, 648
BsrI	ACTGG	5 cut(s)	206, 415, 700, 772, 1024
BssECI	CCNNGG	4 cut(s)	115, 116, 361, 945
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	945
Bst4CI	ACNGT	3 cut(s)	470, 510, 583
Bst6I	CTCTTC	2 cut(s)	116, 405
BstC8I	GCNNGC	2 cut(s)	517, 543
BstDEI	CTNAG	4 cut(s)	404, 682, 692, 1044
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	1 cut(s)	330
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 98, 317, 803, 836
BstSCI	CCNGG	2 cut(s)	114, 115
BstSFI	CTRYAG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	4 cut(s)	304, 463, 818, 826
BstV2I	GAAGAC	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	1095
BsuTUI	ATCGAT	1 cut(s)	613
BtsI	GCAGTG	2 cut(s)	196, 354
BtsIMutI	CAGTG	6 cut(s)	196, 354, 466, 515, 588, 942
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	517, 543
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	956, 1094
Cfr9I	CCCGGG	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	613
CviAII	CATG	6 cut(s)	236, 385, 520, 591, 758, 887
DdeI	CTNAG	4 cut(s)	404, 682, 692, 1044
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraIII	CACNNNGTG	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	116, 405
EarI	CTCTTC	2 cut(s)	116, 405
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	956
Eco53kI	GAGCTC	1 cut(s)	398
Eco88I	CYCGRG	3 cut(s)	115, 269, 500
EcoICRI	GAGCTC	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	956, 1094
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	6 cut(s)	239, 388, 523, 594, 761, 890
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	6 cut(s)	235, 384, 519, 590, 757, 886
FauI	CCCGC	2 cut(s)	51, 823
Fnu4HI	GCNGC	4 cut(s)	318, 477, 807, 840
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	318, 477, 807, 840
FspBI	CTAG	3 cut(s)	182, 516, 1032
GluI	GCNGC	4 cut(s)	318, 477, 807, 840
HaeIII	GGCC	1 cut(s)	1095
HapII	CCGG	2 cut(s)	116, 798
Hin1II	CATG	6 cut(s)	239, 388, 523, 594, 761, 890
HinfI	GANTC	7 cut(s)	211, 503, 602, 733, 950, 998, 1040
HpaII	CCGG	2 cut(s)	116, 798
HphI	GGTGA	1 cut(s)	1091
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	7 cut(s)	263, 405, 492, 658, 972, 1045, 1081
Hpy188III	TCNNGA	9 cut(s)	236, 250, 287, 460, 500, 694, 954, 963, 1015
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	6 cut(s)	91, 580, 633, 898, 969, 1086
HpyCH4III	ACNGT	3 cut(s)	470, 510, 583
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 98, 317, 803, 836
HpyF3I	CTNAG	4 cut(s)	404, 682, 692, 1044
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	239, 388, 523, 594, 761, 890
Kzo9I	GATC	1 cut(s)	330
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	77, 854, 1028
Lsp1109I	GCAGC	4 cut(s)	304, 463, 818, 826
LweI	GCATC	2 cut(s)	45, 463
MaeI	CTAG	3 cut(s)	182, 516, 1032
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	4 cut(s)	276, 504, 618, 781
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	5 cut(s)	103, 378, 392, 1104, 1138
MfeI	CAATTG	1 cut(s)	993
MhlI	GDGCHC	2 cut(s)	400, 681
MluCI	AATT	4 cut(s)	137, 257, 448, 993
MlyI	GAGTC	3 cut(s)	512, 596, 959
MmeI	TCCRAC	1 cut(s)	985
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	4 cut(s)	282, 324, 441, 1056
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	116, 798
MspR9I	CCNGG	2 cut(s)	116, 117
MunI	CAATTG	1 cut(s)	993
MwoI	GCNNNNNNNGC	5 cut(s)	29, 98, 317, 803, 836
NciI	CCSGG	2 cut(s)	116, 117
NdeII	GATC	1 cut(s)	330
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	6 cut(s)	239, 388, 523, 594, 761, 890
NlaIV	GGNNCC	1 cut(s)	698
NmeAIII	GCCGAG	1 cut(s)	584
NmuCI	GTSAC	1 cut(s)	504
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	211, 733, 998, 1040
PkrI	GCNGC	4 cut(s)	319, 478, 808, 841
PleI	GAGTC	3 cut(s)	511, 596, 958
PpsI	GAGTC	3 cut(s)	511, 596, 958
PpuMI	RGGWCCY	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	956
PspN4I	GGNNCC	1 cut(s)	698
PspPI	GGNCC	2 cut(s)	956, 1094
PspPPI	RGGWCCY	1 cut(s)	956
PsrI	GAACNNNNNNTAC	3 cut(s)	141, 173, 1121
PstI	CTGCAG	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	4 cut(s)	282, 324, 441, 1056
SatI	GCNGC	4 cut(s)	318, 477, 807, 840
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	2 cut(s)	956, 1094
SchI	GAGTC	3 cut(s)	512, 596, 959
ScrFI	CCNGG	2 cut(s)	116, 117
SduI	GDGCHC	2 cut(s)	400, 681
SfaNI	GCATC	2 cut(s)	45, 463
SfcI	CTRYAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	956
SmaI	CCCGGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	137, 257, 448, 993
SsiI	CCGC	3 cut(s)	58, 311, 830
SspI	AATATT	2 cut(s)	130, 496
SspMI	CTAG	3 cut(s)	182, 516, 1032
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	2 cut(s)	114, 115
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	3 cut(s)	470, 510, 583
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	5 cut(s)	613, 637, 962, 1086, 1115
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	137, 257, 448, 993
TfiI	GAWTC	4 cut(s)	211, 733, 998, 1040
Tru1I	TTAA	4 cut(s)	282, 324, 441, 1056
Tru9I	TTAA	4 cut(s)	282, 324, 441, 1056
TscAI	CASTG	6 cut(s)	196, 354, 473, 515, 588, 942
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	4 cut(s)	317, 476, 806, 839
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	7 cut(s)	149, 401, 459, 536, 540, 637, 1133
TspMI	CCCGGG	1 cut(s)	115
TspRI	CASTG	6 cut(s)	196, 354, 473, 515, 588, 942
VneI	GTGCAC	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	1 cut(s)	448
XmaI	CCCGGG	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	3 cut(s)	182, 516, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.