Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000587

Physical Location & Seq

Genomic Coordinates Forward (+)

2347707 .. 2348701

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCAATCCAGATGACCAGGGTGAGATTGATTGGTGCGAAAAGGATTTGCCAGTTGCCTGTGGTAAGTTCAGACTTGGGAGTACTGAAGAAGAAATCACAGATCATCGTATATTTTCAGGTGCATTGCAGAAAAGGCAAGGGTGAAGGCTCTTTTCTGGTATATCCTAGGAAGGGCGAAACTTGGGCCATCTACCAGAACTGGGATAGTGGATGGAGTTCTGAGCCGGAAAAGCATGTGCCCTACACATATGAGTTTGTTGAAGTCTTGACAGATTTTGTCGAAGCTGTTGGAATAGGAGTTTTTTATTTGGACAAAGTGAAAGGGTTTGTGAGTTTATTTGAGCAAAAAATCGAGCAGCACGGGGTTGTCATGTTTCAAGTACCACCTCATGAGCTATACAGATTTTCTCATCAGACTCCCTCTTTCAAAATGACTGGTTGTGAAGGACAAGGTGTTCCCCCAGTATCCTTTGAGCTTGATCCTGCTTCTTTGCCCACCAGCATTTTTGATGCAAGTGATCCAACTCACCTGGAAATGGATGATAGAAGCAAGAAAACTGAAGCTGATGGTTTGTCTTGTGGAAAAGTCGATTCTGTAACTGCATGCACAGCAGCAAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

209

Amino Acids

23.27

Weight (kDa)

6.3

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	39 - 148	1.9e-37	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04980 AT3G04980 AT3G04980 AT5G27240 AT5G27240 AT5G27240
fragaria_vesca	FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_6g04070 FvH4_6g04330 FvH4_6g04680 FvH4_6g04681 FvH4_6g04720 FvH4_6g04760 FvH4_6g04760 FvH4_6g04761 FvH4_6g04761
malus_domestica	MD04G1213700.v1.1 MD12G1228700.v1.1
prunus_persica	Prupe.6G333800_v2.0.a1
pyrus_communis	pycom04g18920 pycom12g21320
rosa_chinensis	RchiOBHm_Chr3g0453151 RchiOBHm_Chr3g0453171 RchiOBHm_Chr3g0453181 RchiOBHm_Chr3g0453201 RchiOBHm_Chr5g0001351
rosa_laevigata	RLG00000025529 RLG00000025530 RLG00000025531 RLG00000025533
rosa_multiflora	Rmu_co8043000.1_g000001 Rmu_co8484983.1_g000001 Rmu_sc0003983.1_g000011 Rmu_sc0007132.1_g000007 Rmu_sc0007132.1_g000009 Rmu_sc0013481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423760 Rroxscaffold_6G00430210 Rroxscaffold_6G00430230 Rroxscaffold_6G00430240 Rroxscaffold_6G00430260
rosa_rugosa	Rorug02G0646800 Rorug02G0646900 Rorug02G0646900 Rorug02G0647000 Rorug02G0647000 Rorug02G0647200 Rorug02G0647200 Rorug02G0647300 Rorug04G0390000
rosa_samantha	Rh3AG049500 Rh3AG049700 Rh3AG049800 Rh3AG050000 Rh3BG050700 Rh3BG050900 Rh3BG051000 Rh3BG051200 Rh3CG050900 Rh3CG051100 Rh3CG051200 Rh3CG051400 Rh3DG051500 Rh3DG051700 Rh3DG051800 Rh3DG052000 Rh5AG010200 Rh5AG010300 Rh5BG013000 Rh5CG011200 Rh5CG011300 Rh5DG010700
rosa_wichuraiana	Rw3G003800 Rw3G003820 Rw3G003830 Rw3G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	476, 515
AcuI	CTGAAG	2 cut(s)	107, 582
AfaI	GTAC	2 cut(s)	84, 384
AfiI	CCNNNNNNNGG	3 cut(s)	173, 202, 538
AgsI	TTSAA	3 cut(s)	263, 380, 430
AjnI	CCWGG	2 cut(s)	17, 531
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	4 cut(s)	287, 397, 478, 566
AluI	AGCT	4 cut(s)	287, 397, 478, 566
AlwI	GGATC	2 cut(s)	476, 515
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	358, 614
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	34, 155, 521
AvrII	CCTAGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	197, 207, 563
BciT130I	CCWGG	2 cut(s)	19, 533
BciVI	GTATCC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	2 cut(s)	359, 615
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	2 cut(s)	360, 616
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	19, 533
BmgT120I	GGNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	19, 533
BmrI	ACTGGG	2 cut(s)	211, 458
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	2 cut(s)	211, 458
BsaJI	CCNNGG	2 cut(s)	18, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 202, 538
Bse1I	ACTGG	4 cut(s)	52, 206, 442, 464
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	19, 533
BseDI	CCNNGG	2 cut(s)	18, 167
BseGI	GGATG	2 cut(s)	218, 547
BseLI	CCNNNNNNNGG	3 cut(s)	173, 202, 538
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	4 cut(s)	52, 206, 442, 464
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	173, 202, 538
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	102, 481, 520
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	391
BspPI	GGATC	2 cut(s)	476, 515
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	4 cut(s)	52, 206, 442, 464
BssECI	CCNNGG	2 cut(s)	18, 167
BssMI	GATC	3 cut(s)	102, 481, 520
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	19, 533
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	218, 547
BstKTI	GATC	3 cut(s)	105, 484, 523
BstMBI	GATC	3 cut(s)	102, 481, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 232, 611
BstNI	CCWGG	2 cut(s)	19, 533
BstNSI	RCATGY	2 cut(s)	239, 609
BstSCI	CCNGG	2 cut(s)	17, 531
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	218, 547
Cac8I	GCNNGC	1 cut(s)	607
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	83, 383
CviAII	CATG	4 cut(s)	236, 373, 392, 606
CviJI	RGCY	7 cut(s)	150, 188, 226, 287, 397, 478, 566
CviKI_1	RGCY	7 cut(s)	150, 188, 226, 287, 397, 478, 566
CviQI	GTAC	2 cut(s)	83, 383
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	104, 483, 522
DpnII	GATC	3 cut(s)	102, 481, 520
Eco130I	CCWWGG	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	107, 582
EcoRII	CCWGG	2 cut(s)	17, 531
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	4 cut(s)	239, 376, 395, 609
FatI	CATG	4 cut(s)	235, 372, 391, 605
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	359, 615
FokI	GGATG	2 cut(s)	225, 554
Fsp4HI	GCNGC	2 cut(s)	359, 615
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	359, 615
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	4 cut(s)	239, 376, 395, 609
HinfI	GANTC	2 cut(s)	418, 593
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	3 cut(s)	34, 155, 521
Hpy188I	TCNGA	3 cut(s)	73, 223, 417
Hpy188III	TCNNGA	3 cut(s)	10, 268, 392
HpyAV	CCTTC	3 cut(s)	140, 166, 440
HpyCH4V	TGCA	5 cut(s)	124, 129, 515, 605, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 232, 611
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	239, 376, 395, 609
Kzo9I	GATC	3 cut(s)	102, 481, 520
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	3 cut(s)	104, 483, 522
MboI	GATC	3 cut(s)	102, 481, 520
MboII	GAAGA	2 cut(s)	100, 103
MhlI	GDGCHC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	2 cut(s)	271, 548
MnlI	CCTC	2 cut(s)	399, 433
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	19, 533
MvaI	CCWGG	2 cut(s)	19, 533
MwoI	GCNNNNNNNGC	3 cut(s)	135, 232, 611
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	3 cut(s)	102, 481, 520
NlaIII	CATG	4 cut(s)	239, 376, 395, 609
NspI	RCATGY	2 cut(s)	239, 609
PaeI	GCATGC	1 cut(s)	609
PagI	TCATGA	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	360, 616
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	17, 531
PspGI	CCWGG	2 cut(s)	17, 531
PspPI	GGNCC	1 cut(s)	186
RsaI	GTAC	2 cut(s)	84, 384
RsaNI	GTAC	2 cut(s)	83, 383
SatI	GCNGC	2 cut(s)	359, 615
Sau3AI	GATC	3 cut(s)	102, 481, 520
Sau96I	GGNCC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	19, 533
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	9 cut(s)	123, 289, 391, 399, 457, 480, 534, 568, 624
SfaNI	GCATC	1 cut(s)	502
SphI	GCATGC	1 cut(s)	609
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	17, 531
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	3 cut(s)	282, 354, 591
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	358, 614
XceI	RCATGY	2 cut(s)	239, 609
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.