Rmu_co8043000.1_g000001

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8043000.1
OG0000587
Physical Location & Seq
Forward (+)
46 .. 555
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8043000.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atgaaagagaagaacctttcttacattggtaatgatgatgatgatgatgattttgtgagccctccaaactggtcagggaagagcccactgtccagtgctactgaaaagaaaagaaagaatgcagctgcgtatggtgggtgtgggtcatttaatattgataggtcaccttattctgctgatgctgctgtggatggacataagaagaaggcaagacaaaaagtaagcttccctctagaagaatgtatgcccagcaaaaagagtaaaactggggaacctgtgccagataatgatgaaaccaacttcaaagctaatgtcactcctgggccaaatgtagatgttgcatccacaccacaactcattgaggttcctgatccccaattccataagtttgtgcttaatgaagataagttagccagtatttttaaagctaatcaaacatgggctctttttgatgatgaagcagatggcatgcccaggtactatgcttttgtcaagaaagtattacacacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

170

Amino Acids

18.8

Weight (kDa)

5.64

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 365
AfaI GTAC 1 cut(s) 479
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 2 cut(s) 319, 473
AluBI AGCT 4 cut(s) 125, 225, 308, 428
AluI AGCT 4 cut(s) 125, 225, 308, 428
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 3 cut(s) 122, 125, 182
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 156
BanII GRGCYC 3 cut(s) 62, 86, 445
BbvI GCAGC 3 cut(s) 112, 134, 169
BccI CCATC 2 cut(s) 185, 458
BciT130I CCWGG 2 cut(s) 321, 475
BfaI CTAG 1 cut(s) 233
BisI GCNGC 3 cut(s) 123, 126, 183
BlsI GCNGC 3 cut(s) 124, 127, 184
Bme1390I CCNGG 2 cut(s) 321, 475
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 273, 366
BmrFI CCNGG 2 cut(s) 321, 475
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 169, 350
BmuI ACTGGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 320, 473
Bse1I ACTGG 4 cut(s) 74, 93, 271, 414
BseBI CCWGG 2 cut(s) 321, 475
BseDI CCNNGG 2 cut(s) 320, 473
BseGI GGATG 2 cut(s) 196, 341
BseNI ACTGG 4 cut(s) 74, 93, 271, 414
BseXI GCAGC 3 cut(s) 112, 134, 169
BseYI CCCAGC 1 cut(s) 248
BshFI GGCC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 325
Bsp1286I GDGCHC 3 cut(s) 62, 86, 445
Bsp143I GATC 1 cut(s) 370
BspANI GGCC 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 273, 366
BspPI GGATC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 74
BsrI ACTGG 4 cut(s) 74, 93, 271, 414
BssECI CCNNGG 2 cut(s) 320, 473
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 321, 475
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 470
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 196, 341
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 321, 475
BstNSI RCATGY 1 cut(s) 472
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 319, 473
BstV1I GCAGC 3 cut(s) 112, 134, 169
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 196, 341
BtsIMutI CAGTG 2 cut(s) 86, 100
Cac8I GCNNGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 478
CviAII CATG 2 cut(s) 438, 469
CviJI RGCY 9 cut(s) 60, 84, 125, 225, 308, 325, 413, 428, 443
CviKI_1 RGCY 9 cut(s) 60, 84, 125, 225, 308, 325, 413, 428, 443
CviQI GTAC 1 cut(s) 478
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco24I GRGCYC 3 cut(s) 62, 86, 445
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 319, 473
EcoT38I GRGCYC 3 cut(s) 62, 86, 445
FaeI CATG 2 cut(s) 441, 472
FaiI YATR 7 cut(s) 132, 198, 245, 384, 439, 470, 483
FatI CATG 2 cut(s) 437, 468
Fnu4HI GCNGC 3 cut(s) 123, 126, 183
FokI GGATG 2 cut(s) 203, 328
FriOI GRGCYC 3 cut(s) 62, 86, 445
Fsp4HI GCNGC 3 cut(s) 123, 126, 183
FspBI CTAG 1 cut(s) 233
GluI GCNGC 3 cut(s) 123, 126, 183
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 325
Hin1II CATG 2 cut(s) 441, 472
HindIII AAGCTT 1 cut(s) 223
HphI GGTGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 233, 368, 493
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 122, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 441, 472
Kzo9I GATC 1 cut(s) 370
LguI GCTCTTC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 112, 134, 169
LweI GCATC 2 cut(s) 169, 350
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 162, 313
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 5 cut(s) 22, 91, 214, 248, 413
MhlI GDGCHC 3 cut(s) 62, 86, 445
MluCI AATT 1 cut(s) 377
MnlI CCTC 3 cut(s) 72, 240, 355
MseI TTAA 3 cut(s) 150, 396, 423
MspA1I CMGCKG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 321, 475
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 321, 475
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 441, 472
NlaIV GGNNCC 2 cut(s) 273, 366
NmuCI GTSAC 2 cut(s) 162, 313
NspI RCATGY 1 cut(s) 472
PaeI GCATGC 1 cut(s) 472
PciSI GCTCTTC 1 cut(s) 74
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 124, 127, 184
Psp6I CCWGG 2 cut(s) 319, 473
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 2 cut(s) 319, 473
PspN4I GGNNCC 2 cut(s) 273, 366
PspPI GGNCC 1 cut(s) 323
PsrI GAACNNNNNNTAC 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 150, 396, 423
SatI GCNGC 3 cut(s) 123, 126, 183
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 321, 475
SduI GDGCHC 3 cut(s) 62, 86, 445
SfaNI GCATC 2 cut(s) 169, 350
SphI GCATGC 1 cut(s) 472
Sse9I AATT 1 cut(s) 377
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 319, 473
TaaI ACNGT 1 cut(s) 90
TasI AATT 1 cut(s) 377
Tru1I TTAA 3 cut(s) 150, 396, 423
Tru9I TTAA 3 cut(s) 150, 396, 423
TscAI CASTG 2 cut(s) 93, 100
TseFI GTSAC 2 cut(s) 162, 313
TseI GCWGC 3 cut(s) 122, 125, 182
Tsp45I GTSAC 2 cut(s) 162, 313
TspDTI ATGAA 4 cut(s) 17, 306, 414, 471
TspRI CASTG 2 cut(s) 93, 100
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 472
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.