Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000587

Physical Location & Seq

Genomic Coordinates Forward (+)

724002 .. 724490

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTTCTCATCAGATGCACGCCACAACAGGGAGTCTTACAGGCTCTGTTTTGGTATATCCTAGGAAGGGAGAAACTTGGGCCATCTACCAGAATTGGGATATTGGGTGGAGTTCTGAGCCGGAAAAGCACGTATCTTACAAATATGAATTTGTTGAAGTCTTGTCAGATTTTGTGGAAGGTGATGGAATTGGAGTTTCTTATTTAGGCAAAGTAAAAGGATTTGTTAGTTTATTTCAGCAAACCGAGCAGCATGGGTTTCAAGTACCACCTGATGAGCTTTATAGATTTTCTCATCGAATTCCCTCTTTCAAGATGACTGGTCATGAAGGATATGGTGTTCCCTCAGGATCCTTTGAGCTAGATCCTGCTTCTTTGCCCTCCAGTATTTTGATTCATGATGTACGTGATTTGGAAATCGATAACAGAAGGAAGAATACTGAACCTAGTGATTTGTCTGGTGAATTTGTAGAAAGGTTGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

162

Amino Acids

18.36

Weight (kDa)

5.16

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	1 - 110	8.2e-40	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04980 AT3G04980 AT3G04980 AT5G27240 AT5G27240 AT5G27240
fragaria_vesca	FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_3g00860 FvH4_6g04070 FvH4_6g04330 FvH4_6g04680 FvH4_6g04681 FvH4_6g04720 FvH4_6g04760 FvH4_6g04760 FvH4_6g04761 FvH4_6g04761
malus_domestica	MD04G1213700.v1.1 MD12G1228700.v1.1
prunus_persica	Prupe.6G333800_v2.0.a1
pyrus_communis	pycom04g18920 pycom12g21320
rosa_chinensis	RchiOBHm_Chr3g0453151 RchiOBHm_Chr3g0453171 RchiOBHm_Chr3g0453181 RchiOBHm_Chr3g0453201 RchiOBHm_Chr5g0001351
rosa_laevigata	RLG00000025529 RLG00000025530 RLG00000025531 RLG00000025533
rosa_multiflora	Rmu_co8043000.1_g000001 Rmu_co8484983.1_g000001 Rmu_sc0003983.1_g000011 Rmu_sc0007132.1_g000007 Rmu_sc0007132.1_g000009 Rmu_sc0013481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423760 Rroxscaffold_6G00430210 Rroxscaffold_6G00430230 Rroxscaffold_6G00430240 Rroxscaffold_6G00430260
rosa_rugosa	Rorug02G0646800 Rorug02G0646900 Rorug02G0646900 Rorug02G0647000 Rorug02G0647000 Rorug02G0647200 Rorug02G0647200 Rorug02G0647300 Rorug04G0390000
rosa_samantha	Rh3AG049500 Rh3AG049700 Rh3AG049800 Rh3AG050000 Rh3BG050700 Rh3BG050900 Rh3BG051000 Rh3BG051200 Rh3CG050900 Rh3CG051100 Rh3CG051200 Rh3CG051400 Rh3DG051500 Rh3DG051700 Rh3DG051800 Rh3DG052000 Rh5AG010200 Rh5AG010300 Rh5BG013000 Rh5CG011200 Rh5CG011300 Rh5DG010700
rosa_wichuraiana	Rw3G003800 Rw3G003820 Rw3G003830 Rw3G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	345, 358, 359
AcsI	RAATTY	3 cut(s)	149, 300, 464
AfaI	GTAC	2 cut(s)	267, 405
AfiI	CCNNNNNNNGG	3 cut(s)	30, 68, 97
AgsI	TTSAA	3 cut(s)	158, 263, 313
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	2 cut(s)	280, 361
AluI	AGCT	2 cut(s)	280, 361
AlwI	GGATC	3 cut(s)	345, 358, 359
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	3 cut(s)	149, 300, 464
AspA2I	CCTAGG	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	194, 473
AvrII	CCTAGG	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	92, 179
BfaI	CTAG	3 cut(s)	63, 362, 447
BisI	GCNGC	1 cut(s)	251
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	420
BsaAI	YACGTR	2 cut(s)	133, 407
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 68, 97
Bse1I	ACTGG	2 cut(s)	325, 384
Bse21I	CCTNAGG	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	3 cut(s)	30, 68, 97
BseMII	CTCAG	2 cut(s)	108, 360
BseNI	ACTGG	2 cut(s)	325, 384
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	30, 68, 97
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	350, 364
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	109, 359
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	2 cut(s)	325, 397
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	3 cut(s)	345, 358, 359
BsrI	ACTGG	2 cut(s)	325, 384
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	350, 364
BssT1I	CCWWGG	1 cut(s)	62
BstBAI	YACGTR	2 cut(s)	133, 407
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	117, 346
BstKTI	GATC	2 cut(s)	353, 367
BstMBI	GATC	2 cut(s)	350, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 247
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	350, 364
BstYI	RGATCY	2 cut(s)	350, 364
Bsu15I	ATCGAT	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	47
CciI	TCATGA	2 cut(s)	325, 397
Cfr13I	GGNCC	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	266, 404
CviAII	CATG	3 cut(s)	254, 326, 398
CviJI	RGCY	5 cut(s)	45, 83, 121, 280, 361
CviKI_1	RGCY	5 cut(s)	45, 83, 121, 280, 361
CviQI	GTAC	2 cut(s)	266, 404
DdeI	CTNAG	2 cut(s)	117, 346
DpnI	GATC	2 cut(s)	352, 366
DpnII	GATC	2 cut(s)	350, 364
Eco130I	CCWWGG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	257, 329, 401
FaiI	YATR	7 cut(s)	58, 147, 255, 285, 327, 336, 399
FatI	CATG	3 cut(s)	253, 325, 397
Fnu4HI	GCNGC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	3 cut(s)	63, 362, 447
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	3 cut(s)	257, 329, 401
HinfI	GANTC	2 cut(s)	34, 394
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	194, 473
Hpy188I	TCNGA	3 cut(s)	15, 118, 169
Hpy188III	TCNNGA	4 cut(s)	313, 326, 348, 398
HpyAV	CCTTC	4 cut(s)	61, 173, 323, 423
HpyCH4IV	ACGT	2 cut(s)	132, 406
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 247
HpyF3I	CTNAG	2 cut(s)	117, 346
HpySE526I	ACGT	2 cut(s)	132, 406
Hsp92II	CATG	3 cut(s)	257, 329, 401
Kzo9I	GATC	2 cut(s)	350, 364
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	63, 362, 447
MaeII	ACGT	2 cut(s)	132, 406
MalI	GATC	2 cut(s)	352, 366
MboI	GATC	2 cut(s)	350, 364
MboII	GAAGA	1 cut(s)	445
MflI	RGATCY	2 cut(s)	350, 364
MluCI	AATT	5 cut(s)	94, 149, 189, 300, 464
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	316, 355, 391
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	127, 247
NdeII	GATC	2 cut(s)	350, 364
NlaIII	CATG	3 cut(s)	257, 329, 401
NlaIV	GGNNCC	1 cut(s)	352
PagI	TCATGA	2 cut(s)	325, 397
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
Ppu21I	YACGTR	2 cut(s)	133, 407
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	350, 364
RsaI	GTAC	2 cut(s)	267, 405
RsaNI	GTAC	2 cut(s)	266, 404
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	350, 364
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	43
SetI	ASST	8 cut(s)	135, 184, 274, 282, 363, 409, 448, 479
SfaNI	GCATC	1 cut(s)	6
Sse9I	AATT	5 cut(s)	94, 149, 189, 300, 464
SspMI	CTAG	3 cut(s)	63, 362, 447
StyI	CCWWGG	1 cut(s)	62
TaiI	ACGT	2 cut(s)	135, 409
TaqI	TCGA	2 cut(s)	298, 420
TasI	AATT	5 cut(s)	94, 149, 189, 300, 464
TfiI	GAWTC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	162, 342, 386
XapI	RAATTY	3 cut(s)	149, 300, 464
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	63, 362, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.