Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

1632535 .. 1633117

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCAACTCGAAAGGGATCGGCTCCGGACCCAGAACGAGACTTGGGTGATCAAGGAGAAACTTATCACGCAGGAAAAAGAACAACTAGATCAGAGAAGCTCAGAGTTGAAATAGAAGCGAATTTGTGCGCAACATCTGAATTTGAGACAAAGAAGAAGCCTCTCAAGGAGGCCTTGGACGCCAAAACCGAGAGTCTACGTCAGCTACGAGAGGCACTCAAAGAGTTTAGAGATACTCATGAATTGGCTTATATGGAAGCACGATCAGCCATTGCCGATGAAAGGATTGATAGAGTGTATGATATCCCAAAGGCAGAGAGAAAAAAGCTGGCCGAGCTACGTTCAGAGATAAATGAGAAACGGGACAAATTACTTGCTTTTCTTAAGATGTGTGTGAAACATTCAAAGATCACTACTGATGATGTAAAACCTTTGCTCCGAGTCCATTATGATGCATATATTGACACACTCAAGACTGATGTTGATGATGGCGCTGTGGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.25

Weight (kDa)

6.92

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	25
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	121, 140
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	110, 405
AluBI	AGCT	4 cut(s)	100, 205, 328, 337
AluI	AGCT	4 cut(s)	100, 205, 328, 337
Alw26I	GTCTC	2 cut(s)	33, 140
AlwI	GGATC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	2 cut(s)	171, 330
ApoI	RAATTY	2 cut(s)	121, 140
AspLEI	GCGC	2 cut(s)	131, 494
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	28
BccI	CCATC	1 cut(s)	482
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	33, 140
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	24, 30
BmsI	GCATC	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BpuEI	CTTGAG	2 cut(s)	149, 455
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	173, 332
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	33, 140
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	173, 332
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	17, 49, 89, 263, 408
BspANI	GGCC	2 cut(s)	173, 332
BspCNI	CTCAG	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	24, 30
BspPI	GGATC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	17, 49, 89, 263, 408
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	2 cut(s)	131, 494
BstKTI	GATC	5 cut(s)	20, 52, 92, 266, 411
BstMAI	GTCTC	2 cut(s)	33, 140
BstMBI	GATC	5 cut(s)	17, 49, 89, 263, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 266, 334
BsuRI	GGCC	2 cut(s)	173, 332
BtsCI	GGATG	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	2 cut(s)	131, 494
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	188
CviAII	CATG	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	5 cut(s)	19, 51, 91, 265, 410
DpnII	GATC	5 cut(s)	17, 49, 89, 263, 408
EaeI	YGGCCR	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	242
FaiI	YATR	7 cut(s)	240, 252, 254, 300, 450, 457, 459
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	87
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	2 cut(s)	130, 493
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	173, 332
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	131, 494
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	2 cut(s)	129, 492
HinP1I	GCGC	2 cut(s)	129, 492
HinfI	GANTC	2 cut(s)	193, 441
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	5 cut(s)	94, 104, 139, 346, 440
Hpy188III	TCNNGA	3 cut(s)	26, 239, 472
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	199, 340
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 266, 334
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	199, 340
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	2 cut(s)	129, 492
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	17, 49, 89, 263, 408
LmnI	GCTCC	2 cut(s)	28, 441
LpnPI	CCDG	4 cut(s)	39, 45, 57, 314
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	199, 340
MalI	GATC	5 cut(s)	19, 51, 91, 265, 410
MboI	GATC	5 cut(s)	17, 49, 89, 263, 408
MboII	GAAGA	1 cut(s)	166
MluCI	AATT	4 cut(s)	121, 140, 242, 368
MlyI	GAGTC	2 cut(s)	202, 450
MnlI	CCTC	3 cut(s)	163, 171, 205
Mph1103I	ATGCAT	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	2 cut(s)	384, 505
MslI	CAYNNNNRTG	1 cut(s)	450
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	179, 266, 334
NdeII	GATC	5 cut(s)	17, 49, 89, 263, 408
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	24, 30
NmeAIII	GCCGAG	1 cut(s)	358
NsbI	TGCGCA	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	457
PagI	TCATGA	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 205
PleI	GAGTC	2 cut(s)	201, 449
PpsI	GAGTC	2 cut(s)	201, 449
PspN4I	GGNNCC	2 cut(s)	24, 30
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	384, 505
Sau3AI	GATC	5 cut(s)	17, 49, 89, 263, 408
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	202, 450
SetI	ASST	7 cut(s)	102, 202, 207, 330, 339, 343, 433
SfaNI	GCATC	1 cut(s)	442
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	3 cut(s)	164, 383, 470
SmoI	CTYRAG	3 cut(s)	164, 383, 470
Sse9I	AATT	4 cut(s)	121, 140, 242, 368
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	2 cut(s)	202, 343
TaqI	TCGA	1 cut(s)	10
TasI	AATT	4 cut(s)	121, 140, 242, 368
Tru1I	TTAA	2 cut(s)	384, 505
Tru9I	TTAA	2 cut(s)	384, 505
TspDTI	ATGAA	2 cut(s)	255, 294
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	121, 140
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.