Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

64751834 .. 64752941

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGGCGGCGGAGGAGACAGGCACCATGGACGAAGAGGTTTTGAGGCTCAAAGAGCAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGATAGCTGGATGGCCAAGGAGAGACTTGTCACGCAGGAAAAAGAAGCAGCAGAAGAAAAGCTCAGAGCTTTTATAAAAGCGACTTCGAGTGCAAGATCTGAATTTGACAAAAAAAGAAAGACACCAAGAAGAAGAGCGTGCATCAGGCTGATAAATGTATATTTAACTGTCATGCTAGTCACTCCCACCTACAACGTCTCAAGTTTTGAGTTTCTGTTAAATAAGGCAATCGATGAGTTTCTTGCTCGTCCTGATGTGAGTTATATGGGAAAACAAACACCCGTCATGGAGAAGTTTGATGGATTGATTGCTGAAATACGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGAGATATTGGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGACGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACGCACTCAAGACTGAGGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCTAAATTCTTCAACTTCTTTCTAACAAAGGAGTCCAACAAAGATACTGAGCATAAACATCCTGTAAGAGATGATGACGAGTCTGAACATCCTGACGAAGCCTCAATAGGAAGGAAGCTTTTGGACTTTATCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

32.78

Weight (kDa)

5.83

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	3 cut(s)	8, 11, 696
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	206, 535, 710
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	1 cut(s)	718
AluBI	AGCT	7 cut(s)	61, 88, 111, 166, 173, 472, 823
AluI	AGCT	7 cut(s)	61, 88, 111, 166, 173, 472, 823
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	4 cut(s)	11, 121, 307, 446
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	58, 88, 152, 698
ApoI	RAATTY	3 cut(s)	206, 535, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	4 cut(s)	70, 75, 164, 685
BccI	CCATC	2 cut(s)	109, 398
BcoDI	GTCTC	4 cut(s)	11, 121, 307, 446
BfaI	CTAG	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	518
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	5 cut(s)	9, 59, 89, 153, 699
BlsI	GCNGC	5 cut(s)	10, 60, 90, 154, 700
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	2 cut(s)	255, 574
BpuEI	CTTGAG	2 cut(s)	289, 587
Bsa29I	ATCGAT	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	27, 120
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bse3DI	GCAATG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	27, 120
BseGI	GGATG	4 cut(s)	120, 619, 763, 793
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	181, 600, 744
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	4 cut(s)	70, 75, 164, 685
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	512
BsmAI	GTCTC	4 cut(s)	11, 121, 307, 446
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	8, 11, 696
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	3 cut(s)	180, 601, 745
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	708
BssECI	CCNNGG	2 cut(s)	27, 120
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	27, 120
Bst4CI	ACNGT	2 cut(s)	274, 663
Bst6I	CTCTTC	2 cut(s)	30, 232
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	167, 609, 753
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	120, 619, 763, 793
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	4 cut(s)	11, 121, 307, 446
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	70, 75, 164, 685
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	120, 619, 763, 793
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	336
CseI	GACGC	1 cut(s)	605
CviAII	CATG	3 cut(s)	28, 277, 391
DdeI	CTNAG	3 cut(s)	167, 609, 753
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
DraI	TTTAAA	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	30, 232
EarI	CTCTTC	2 cut(s)	30, 232
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	27, 120
EcoT14I	CCWWGG	2 cut(s)	27, 120
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	2 cut(s)	27, 120
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	3 cut(s)	31, 280, 394
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	3 cut(s)	27, 276, 390
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	9, 59, 89, 153, 699
FokI	GGATG	4 cut(s)	127, 626, 750, 780
Fsp4HI	GCNGC	5 cut(s)	9, 59, 89, 153, 699
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	5 cut(s)	9, 59, 89, 153, 699
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	31, 280, 394
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	573, 737, 785
Hpy166II	GTNNAC	2 cut(s)	466, 595
Hpy188I	TCNGA	6 cut(s)	170, 205, 481, 541, 572, 790
Hpy188III	TCNNGA	4 cut(s)	94, 356, 604, 797
Hpy8I	GTNNAC	2 cut(s)	466, 595
HpyAV	CCTTC	1 cut(s)	810
HpyCH4III	ACNGT	2 cut(s)	274, 663
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	197, 246, 587, 646, 658, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	167, 609, 753
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	31, 280, 394
Kzo9I	GATC	1 cut(s)	200
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	3 cut(s)	85, 96, 573
Lsp1109I	GCAGC	4 cut(s)	70, 75, 164, 685
LweI	GCATC	2 cut(s)	255, 574
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	133, 283
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	5 cut(s)	47, 170, 246, 249, 706
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	5 cut(s)	206, 502, 535, 690, 710
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	3 cut(s)	567, 746, 794
MmeI	TCCRAC	2 cut(s)	595, 765
MnlI	CCTC	5 cut(s)	7, 31, 39, 604, 817
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	5 cut(s)	269, 323, 519, 632, 681
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	698
MspCI	CTTAAG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	31, 280, 394
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	133, 283
NsiI	ATGCAT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	10, 60, 90, 154, 700
PleI	GAGTC	3 cut(s)	567, 745, 793
PpsI	GAGTC	3 cut(s)	567, 745, 793
PsiI	TTATAA	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	5 cut(s)	269, 323, 519, 632, 681
SatI	GCNGC	5 cut(s)	9, 59, 89, 153, 699
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	3 cut(s)	567, 746, 794
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	2 cut(s)	255, 574
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	3 cut(s)	304, 518, 602
SmoI	CTYRAG	3 cut(s)	304, 518, 602
Sse9I	AATT	5 cut(s)	206, 502, 535, 690, 710
SsiI	CCGC	3 cut(s)	8, 11, 696
SspMI	CTAG	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	27, 120
TaaI	ACNGT	2 cut(s)	274, 663
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	191, 336
TasI	AATT	5 cut(s)	206, 502, 535, 690, 710
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	269, 323, 519, 632, 681
Tru9I	TTAA	5 cut(s)	269, 323, 519, 632, 681
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	133, 283
TseI	GCWGC	4 cut(s)	58, 88, 152, 698
Tsp45I	GTSAC	2 cut(s)	133, 283
TspRI	CASTG	1 cut(s)	553
Vha464I	CTTAAG	1 cut(s)	518
XapI	RAATTY	3 cut(s)	206, 535, 710
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.