Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

2186186 .. 2189503

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGCATGATCATGAAGCAGCTCTATTCCATTCATACCCTGCCTGTGCATACTACGTCCAGAGCCCATCCACCATCTCCCATGCTAACAGCGCCCATATCCGAAACAGCACCATCCCCGAATCCGAATTCCAATTCAACTCCCCCGCCCGACCCGACCCAACAAACCCTACCCTTCAGGAGCAGGAAGCAGCCTCTCGAGCCTTTACTCTCTCGCACTACTCCTCCTCTCGAGGCTCCAGCCACTCCTTCTTGCATCACCAGAAAAAGATCTCTTACGACGCAGGTAGCCACGAAAATGGCGAGAACCGTTTGATTATTGTGGATGCCGGCGGCGATGATATTCATAACGGTGATGGTCGTGACGATGATGATGAATATGATTATTACGGGATGAAGAAAAGATCAGGGTGGTGGAAGAGGTACTGTTCGTACCGGAATTCGGACTCATGTGTGTGGATTTTCATGCAAATTAGTTGGAGGGCTATCTTGAGCTTCTGGGTTGCATTGCTTGTGTTTTACATCGCCACAAAGCCACCTCCACCCAAAGTATCTATTAAGATGGCAGGAATAGGGCAATTTGGGTTAGGGGAAGGAGTTGATGGTTCAGGTGTTTCAACTAAGTTCCTAACCTGCAATTGTTCCATAGACCTAATAATAGAGAACAAGTCTAAGCTCTTTGGACTTCAAATTCGTCCTCCAGTGATGGACGTCTCCTTCGGCCGCCTGTCTTTTGCATCATCAAATGGACCAAAGCTATATGCAGAACATGGGTCAACAAAGTTCAAGTTATATGTGGGAACAAGAAACAGGCCTATGTATGGTGCTGGAAGAAGCATGGAGGACATGTTAGAGTCAGGCAAGGGTTTGCCTTTGGTGGTTCGAGTCAGATTGCGCTCAAGTTTTCAAGTCGTTTGGAATCTGATAAAGCCTAAGTTCCATCACCAAGCTCAGTGCTCATTAGTCCTTGATCGGGCTTACGACAAAAGACATCGAACTCAGGCCTACAACAGCACCTGCATAATCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.64

Weight (kDa)

8.84

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1025
AatII	GACGTC	1 cut(s)	714
Acc36I	ACCTGC	3 cut(s)	275, 641, 1025
AciI	CCGC	3 cut(s)	147, 333, 724
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	3 cut(s)	128, 439, 690
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	2 cut(s)	425, 434
AfiI	CCNNNNNNNGG	3 cut(s)	442, 821, 973
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	5 cut(s)	139, 618, 689, 787, 908
AluBI	AGCT	5 cut(s)	23, 495, 676, 757, 950
AluI	AGCT	5 cut(s)	23, 495, 676, 757, 950
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	1 cut(s)	718
AlwNI	CAGNNNCTG	1 cut(s)	1017
Ama87I	CYCGRG	2 cut(s)	198, 231
AoxI	GGCC	3 cut(s)	721, 812, 1002
ApeKI	GCWGC	2 cut(s)	20, 191
ApoI	RAATTY	3 cut(s)	128, 439, 690
ArsI	GACNNNNNNTTYG	4 cut(s)	675, 701, 707, 733
AspLEI	GCGC	2 cut(s)	95, 897
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	3 cut(s)	251, 365, 935
AvaI	CYCGRG	2 cut(s)	198, 231
AvaII	GGWCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	2 cut(s)	32, 203
BccI	CCATC	8 cut(s)	76, 83, 122, 350, 556, 596, 700, 948
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	718
BfoI	RGCGCY	1 cut(s)	96
BfuAI	ACCTGC	3 cut(s)	275, 641, 1025
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	4 cut(s)	21, 192, 334, 724
BlsI	GCNGC	4 cut(s)	22, 193, 335, 725
Bme18I	GGWCC	1 cut(s)	749
BmeT110I	CYCGRG	2 cut(s)	198, 231
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	3 cut(s)	265, 316, 746
BpmI	CTGGAG	2 cut(s)	223, 684
BpuEI	CTTGAG	2 cut(s)	511, 883
BsaHI	GRCGYC	1 cut(s)	711
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 821, 973
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	506
BseGI	GGATG	4 cut(s)	68, 114, 331, 399
BseLI	CCNNNNNNNGG	3 cut(s)	442, 821, 973
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	965, 1013
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	2 cut(s)	214, 217
BseX3I	CGGCCG	1 cut(s)	721
BseXI	GCAGC	2 cut(s)	32, 203
Bsh1285I	CGRYCG	1 cut(s)	724
BshFI	GGCC	3 cut(s)	723, 814, 1004
BsiEI	CGRYCG	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	959
BsiHKCI	CYCGRG	2 cut(s)	198, 231
BsiSI	CCGG	2 cut(s)	330, 436
BslI	CCNNNNNNNGG	3 cut(s)	442, 821, 973
BsmAI	GTCTC	1 cut(s)	718
BsmBI	CGTCTC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	723, 814, 1004
BsoBI	CYCGRG	2 cut(s)	198, 231
Bsp1286I	GDGCHC	2 cut(s)	68, 959
Bsp143I	GATC	4 cut(s)	10, 270, 404, 970
BspACI	CCGC	3 cut(s)	147, 333, 724
BspANI	GGCC	3 cut(s)	723, 814, 1004
BspCNI	CTCAG	2 cut(s)	964, 1012
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	238
BspMI	ACCTGC	3 cut(s)	275, 641, 1025
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	4 cut(s)	10, 270, 404, 970
BssNI	GRCGYC	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	311, 353, 428
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	5 cut(s)	621, 672, 933, 951, 999
BstF5I	GGATG	4 cut(s)	68, 114, 331, 399
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 897
BstKTI	GATC	4 cut(s)	13, 273, 407, 973
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	4 cut(s)	10, 270, 404, 970
BstMCI	CGRYCG	1 cut(s)	724
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 200
BstNSI	RCATGY	1 cut(s)	850
BstV1I	GCAGC	2 cut(s)	32, 203
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	270
BstZI	CGGCCG	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	723, 814, 1004
BtgZI	GCGATG	2 cut(s)	351, 508
BtsCI	GGATG	4 cut(s)	68, 114, 331, 399
BtsIMutI	CAGTG	2 cut(s)	708, 959
BveI	ACCTGC	3 cut(s)	275, 641, 1025
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	1017
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	2 cut(s)	95, 897
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	424, 433
CviAII	CATG	8 cut(s)	8, 14, 83, 450, 466, 770, 838, 847
CviQI	GTAC	2 cut(s)	424, 433
DdeI	CTNAG	5 cut(s)	621, 672, 933, 951, 999
DpnI	GATC	4 cut(s)	12, 272, 406, 972
DpnII	GATC	4 cut(s)	10, 270, 404, 970
EaeI	YGGCCR	1 cut(s)	721
EagI	CGGCCG	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EclXI	CGGCCG	1 cut(s)	721
Eco147I	AGGCCT	2 cut(s)	814, 1004
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	749
Eco52I	CGGCCG	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	2 cut(s)	198, 231
EcoRI	GAATTC	2 cut(s)	128, 439
EcoT38I	GRGCYC	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	718
FaeI	CATG	8 cut(s)	11, 17, 86, 453, 469, 773, 841, 850
FatI	CATG	8 cut(s)	7, 13, 82, 449, 465, 769, 837, 846
FauI	CCCGC	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	21, 192, 334, 724
FokI	GGATG	4 cut(s)	55, 101, 338, 406
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	21, 192, 334, 724
GlaI	GCGC	2 cut(s)	94, 896
GluI	GCNGC	4 cut(s)	21, 192, 334, 724
GsuI	CTGGAG	2 cut(s)	223, 684
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	723, 814, 1004
HapII	CCGG	2 cut(s)	330, 436
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	95, 897
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	8 cut(s)	11, 17, 86, 453, 469, 773, 841, 850
Hin6I	GCGC	2 cut(s)	93, 895
HinP1I	GCGC	2 cut(s)	93, 895
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	122, 446, 854, 885, 919
HpaII	CCGG	2 cut(s)	330, 436
HphI	GGTGA	3 cut(s)	251, 365, 935
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	5 cut(s)	104, 127, 445, 890, 924
Hpy188III	TCNNGA	7 cut(s)	14, 61, 179, 198, 231, 362, 490
Hpy8I	GTNNAC	1 cut(s)	777
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	185, 259, 587, 727
HpyCH4III	ACNGT	3 cut(s)	311, 353, 428
HpyCH4IV	ACGT	2 cut(s)	57, 711
HpyCH4V	TGCA	8 cut(s)	50, 256, 469, 506, 636, 737, 764, 1020
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 200
HpyF3I	CTNAG	5 cut(s)	621, 672, 933, 951, 999
HpySE526I	ACGT	2 cut(s)	57, 711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	8 cut(s)	11, 17, 86, 453, 469, 773, 841, 850
HspAI	GCGC	2 cut(s)	93, 895
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 270, 404, 970
LmnI	GCTCC	3 cut(s)	4, 181, 242
Lsp1109I	GCAGC	2 cut(s)	32, 203
LweI	GCATC	3 cut(s)	265, 316, 746
MaeII	ACGT	2 cut(s)	57, 711
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	12, 272, 406, 972
MboI	GATC	4 cut(s)	10, 270, 404, 970
MboII	GAAGA	3 cut(s)	409, 430, 843
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	68, 959
MluCI	AATT	7 cut(s)	128, 134, 439, 471, 578, 637, 690
MlyI	GAGTC	3 cut(s)	440, 863, 894
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	9 cut(s)	205, 227, 235, 238, 414, 474, 549, 708, 835
MroNI	GCCGGC	1 cut(s)	329
MseI	TTAA	2 cut(s)	558, 1030
MslI	CAYNNNNRTG	4 cut(s)	12, 297, 351, 454
MspI	CCGG	2 cut(s)	330, 436
MunI	CAATTG	1 cut(s)	637
MwoI	GCNNNNNNNGC	2 cut(s)	92, 200
NaeI	GCCGGC	1 cut(s)	331
NdeII	GATC	4 cut(s)	10, 270, 404, 970
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	8 cut(s)	11, 17, 86, 453, 469, 773, 841, 850
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	850
PaeR7I	CTCGAG	2 cut(s)	198, 231
PagI	TCATGA	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	1025
PceI	AGGCCT	2 cut(s)	814, 1004
PciI	ACATGT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	122, 919
PkrI	GCNGC	4 cut(s)	22, 193, 335, 725
PleI	GAGTC	3 cut(s)	440, 862, 893
PpsI	GAGTC	3 cut(s)	440, 862, 893
PscI	ACATGT	1 cut(s)	846
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	2 cut(s)	425, 434
RsaNI	GTAC	2 cut(s)	424, 433
RseI	CAYNNNNRTG	4 cut(s)	12, 297, 351, 454
SaqAI	TTAA	2 cut(s)	558, 1030
SatI	GCNGC	4 cut(s)	21, 192, 334, 724
Sau3AI	GATC	4 cut(s)	10, 270, 404, 970
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	3 cut(s)	440, 863, 894
SduI	GDGCHC	2 cut(s)	68, 959
SfaNI	GCATC	3 cut(s)	265, 316, 746
Sfr274I	CTCGAG	2 cut(s)	198, 231
SinI	GGWCC	1 cut(s)	749
SlaI	CTCGAG	2 cut(s)	198, 231
SmiMI	CAYNNNNRTG	4 cut(s)	12, 297, 351, 454
SmlI	CTYRAG	4 cut(s)	198, 231, 490, 898
SmoI	CTYRAG	4 cut(s)	198, 231, 490, 898
Sse9I	AATT	7 cut(s)	128, 134, 439, 471, 578, 637, 690
SseBI	AGGCCT	2 cut(s)	814, 1004
SsiI	CCGC	3 cut(s)	147, 333, 724
StuI	AGGCCT	2 cut(s)	814, 1004
TaaI	ACNGT	3 cut(s)	311, 353, 428
TaiI	ACGT	2 cut(s)	60, 714
TaqI	TCGA	4 cut(s)	199, 232, 883, 994
TasI	AATT	7 cut(s)	128, 134, 439, 471, 578, 637, 690
TauI	GCSGC	2 cut(s)	336, 726
TfiI	GAWTC	2 cut(s)	122, 919
Tru1I	TTAA	2 cut(s)	558, 1030
Tru9I	TTAA	2 cut(s)	558, 1030
TscAI	CASTG	2 cut(s)	708, 959
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	20, 191
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	6 cut(s)	24, 30, 335, 390, 410, 454
TspRI	CASTG	2 cut(s)	708, 959
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	128, 439, 690
XceI	RCATGY	1 cut(s)	850
XhoI	CTCGAG	2 cut(s)	198, 231
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.