Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

4187607 .. 4189214

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG022900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTGGCGGCAGATGAGGCAGGCACCATGGACGAAGAGGTTTTCAAGCTTAAAGAGAAGCTTTCTCAATGCCAACTCGAAAGGGAGCAGCTCCTGAGAGAGAAAGAGAGCTGGATGATCAAGGAGCAACTTGTGATGCGGGAAAAAGAAGAAGTAGAAGAAAAGCTCAGAATTGAAATAGAGGCAAATTTGTGCGCAAGATCTGAATTTGAAAAAAAAAGAAGAAGCCACTCCAGGAGCCCTTGGAGACCAAAAAGAAGAGTTTACCTAAAGAAGGCATTCAATGAGTTTCATGCTAATGGTGAAATGCCTTATATGGGAGCACGATCAGCCATTGCCAATGACAAGTTAAAGAGATTGCGTGCTGAATTAGAAAAGAAAAATAAGTGCTCACAAGCAGAGAGAGATAAGCGGGACAAGCTACACTTAGAGATAATTGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAATATTCAAAGATCACTGATGATGTAAAACACTTGCTCCGAGTCCACTATGATGCGTATATTGACAAACGCAGGACTGAAAATGATGAATGTGAACTGTTAAGAAAGTATGTGCATTTTGTTCTACAACCGGGTTCTGCTCAGAAGCAAAATGAGATGTTTGCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

25.87

Weight (kDa)

9.15

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	3 cut(s)	8, 139, 412
AcsI	RAATTY	2 cut(s)	187, 206
AfiI	CCNNNNNNNGG	2 cut(s)	274, 317
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	5 cut(s)	46, 176, 212, 283, 489
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	6 cut(s)	49, 61, 91, 111, 166, 421
AluI	AGCT	6 cut(s)	49, 61, 91, 111, 166, 421
Alw21I	GWGCWC	2 cut(s)	325, 392
Alw26I	GTCTC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	187, 206
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	325, 392
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	241
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	9, 89
BlsI	GCNGC	2 cut(s)	10, 90
Bme1390I	CCNGG	2 cut(s)	235, 612
BmiI	GGNNCC	2 cut(s)	25, 239
BmrFI	CCNGG	2 cut(s)	235, 612
BmsI	GCATC	2 cut(s)	126, 523
BpmI	CTGGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	27, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 317
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	27, 242
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	274, 317
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	86, 181, 635
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	644
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	325, 392
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	2 cut(s)	428, 461
BslI	CCNNNNNNNGG	2 cut(s)	274, 317
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	428, 461
BsmI	GAATGC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	242, 325, 392
Bsp143I	GATC	4 cut(s)	117, 200, 326, 492
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	8, 139, 412
BspCNI	CTCAG	3 cut(s)	87, 180, 634
BspLI	GGNNCC	2 cut(s)	25, 239
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	27, 242
BssMI	GATC	4 cut(s)	117, 200, 326, 492
BssT1I	CCWWGG	2 cut(s)	27, 242
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	2 cut(s)	30, 253
BstAFI	CTTAAG	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	22, 363
BstDEI	CTNAG	4 cut(s)	95, 167, 427, 621
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	4 cut(s)	120, 203, 329, 495
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	4 cut(s)	117, 200, 326, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 329, 418
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	233, 610
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	22, 363
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	28, 293
CviJI	RGCY	9 cut(s)	49, 61, 91, 111, 166, 228, 240, 332, 421
CviKI_1	RGCY	9 cut(s)	49, 61, 91, 111, 166, 228, 240, 332, 421
DdeI	CTNAG	4 cut(s)	95, 167, 427, 621
DpnI	GATC	4 cut(s)	119, 202, 328, 494
DpnII	GATC	4 cut(s)	117, 200, 326, 492
Eam1104I	CTCTTC	2 cut(s)	30, 253
EarI	CTCTTC	2 cut(s)	30, 253
Eco130I	CCWWGG	2 cut(s)	27, 242
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	27, 242
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	27, 242
FaeI	CATG	2 cut(s)	31, 296
FaiI	YATR	7 cut(s)	29, 294, 315, 317, 531, 540, 591
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 410, 442
FaqI	GGGAC	2 cut(s)	428, 461
FatI	CATG	2 cut(s)	27, 292
FauI	CCCGC	2 cut(s)	132, 405
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	9, 89
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	9, 89
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	9, 89
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	217
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	31, 296
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	2 cut(s)	47, 59
HinfI	GANTC	1 cut(s)	522
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	265, 526, 575
Hpy188I	TCNGA	4 cut(s)	170, 205, 521, 624
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	3 cut(s)	265, 526, 575
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 329, 418
HpyF3I	CTNAG	4 cut(s)	95, 167, 427, 621
Hsp92II	CATG	2 cut(s)	31, 296
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	117, 200, 326, 492
LmnI	GCTCC	6 cut(s)	85, 96, 124, 237, 320, 522
LpnPI	CCDG	8 cut(s)	6, 97, 107, 220, 247, 538, 624, 630
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	126, 523
MalI	GATC	4 cut(s)	119, 202, 328, 494
MboI	GATC	4 cut(s)	117, 200, 326, 492
MboII	GAAGA	5 cut(s)	47, 161, 170, 234, 270
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	3 cut(s)	242, 325, 392
MluCI	AATT	6 cut(s)	171, 187, 206, 368, 435, 451
MlyI	GAGTC	1 cut(s)	531
MnlI	CCTC	3 cut(s)	10, 31, 175
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	4 cut(s)	51, 350, 468, 581
MslI	CAYNNNNRTG	2 cut(s)	297, 531
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	235, 612
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	17, 329, 418
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	117, 200, 326, 492
NlaIII	CATG	2 cut(s)	31, 296
NlaIV	GGNNCC	2 cut(s)	25, 239
NsbI	TGCGCA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	10, 90
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	25, 239
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	297, 531
SaqAI	TTAA	4 cut(s)	51, 350, 468, 581
SatI	GCNGC	2 cut(s)	9, 89
Sau3AI	GATC	4 cut(s)	117, 200, 326, 492
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	235, 612
SduI	GDGCHC	3 cut(s)	242, 325, 392
SetI	ASST	8 cut(s)	42, 51, 63, 93, 113, 168, 270, 423
SfaNI	GCATC	2 cut(s)	126, 523
SmiMI	CAYNNNNRTG	2 cut(s)	297, 531
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	6 cut(s)	171, 187, 206, 368, 435, 451
SsiI	CCGC	3 cut(s)	8, 139, 412
SspI	AATATT	1 cut(s)	485
StyD4I	CCNGG	2 cut(s)	233, 610
StyI	CCWWGG	2 cut(s)	27, 242
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	78
TasI	AATT	6 cut(s)	171, 187, 206, 368, 435, 451
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	4 cut(s)	51, 350, 468, 581
Tru9I	TTAA	4 cut(s)	51, 350, 468, 581
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	281, 582
TspRI	CASTG	1 cut(s)	502
Vha464I	CTTAAG	1 cut(s)	467
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	187, 206
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.