Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

65409365 .. 65414089

Gene Structure 4725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGAGTCTAGTGAGGCAGGCACCATGGACGAAGAGGTTTTGAAGCTCAAAGAGAAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGAGAGCTGGATGGTCAACGAGAGACTTGTCATGCGGGAAAAAGAAGAAGCAGAAGAAAAGCTCAGAGTTTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGACAAAAAAAGAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGTTAAATAAGGCAATCGATGAGTTTCTTGCTCGTCCTGATGTGAATTATATGGGAAAACGAACACCCGCCGTGGAGAAGTTTGATAGATTGATTGCTGAAATACGAAAGAAAAAAATGTGCTTACAAGCAGAGAAAGATAAGGTGGACAAGCTACATTCACAGATATTGGAGAAACGGGACAATTTATTTTCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGATGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACACACTCAAGACTGACGATGGTGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCAAAATTCTTCAACTTCTTTCTAACAAAGAAGAAGTCCAATGGTTCTCGTATCTACAACGCAGATTCTACCAACAAAGATGCTGAGCCTTTGCTTAGCCTTTTCTATGCTCAGCCTGGGAACAGCCTTTGGAAACGCAAAGCTGATACTGCTTTCATGCATTGCACGACTATGCAATCATTTTTTGAGGAAACACTAGTAGCAATTCCAGACTTTGTCTTGGATGCACCTGTTGGAGCGCCACCATCTGCTGCTTGCCTATCACCACCCAGCGGAGCAGTTAAGGAGCAAAATGTGAAGGCGAATCATGACACCAAGAAAAAGAGCAATGACGGGAGGACGGAGGGTTTTGAAAATGGTAGGAGGATGGAGTCAAGTGAGGCGGGCAACATGGACGAAGACGTCTTGAAGCTCAAAGAGGAGGGAGCGGCTCTTGAAAGAGAAAGAGATGGAGGATCAAGGAGAAACTTTGTCAAGCGGGGAATAGAAAAGGTAGAAGAAAAGCTCAGGGTTGAAATAAAAGCGACTTCGAGTGCAACATCTGAATTTGAAAAAAGAAAAGAAAATATCAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGACTGTGCTGTGTGCATCAGAGGAAGGTGAGAAATGGGACAATTTACTTGCCTTTCTTGAGACTTGTTGGAAAAATTCAAAAATCACTTATGCTGTAAAATCTTTGTTGCAAGTCCACTATGATGCATATATTGACACACTCAAGAGTGACGATCATGATTGTGAATGGTTAAGCAAGTATATGCATTTTGCTCTACAACCGAAGCAAACTGAGACGTTTGCCGGGATTGATTTTATATCTCCAATTTCTGTTGCAATGTCAAAATTCTTCAACTTCTTTCTAAGAAAAAAGGAGTCCAATGGTGCTCGTATCTATGACGCAAGCTCTACCAACAAAGATGCTGAGGTGATATATTTTGTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

541

Amino Acids

62.06

Weight (kDa)

7.89

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1052
AatII	GACGTC	1 cut(s)	1056
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	1079
AciI	CCGC	7 cut(s)	136, 333, 642, 924, 1034, 1079, 1129
AclWI	GGATC	1 cut(s)	1114
AcsI	RAATTY	6 cut(s)	203, 481, 656, 1196, 1330, 1520
AcyI	GRCGYC	1 cut(s)	1053
AfiI	CCNNNNNNNGG	1 cut(s)	923
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	9 cut(s)	43, 664, 1004, 1060, 1088, 1166, 1202, 1335, 1528
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	1 cut(s)	766
Alw21I	GWGCWC	2 cut(s)	516, 1564
Alw26I	GTCTC	5 cut(s)	118, 236, 1238, 1310, 1463
AlwI	GGATC	1 cut(s)	1114
AoxI	GGCC	2 cut(s)	234, 1236
ApeKI	GCWGC	3 cut(s)	85, 644, 902
ApoI	RAATTY	6 cut(s)	203, 481, 656, 1196, 1330, 1520
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AspLEI	GCGC	1 cut(s)	892
AsuC2I	CCSGG	1 cut(s)	1480
AsuHPI	GGTGA	4 cut(s)	575, 906, 1295, 1615
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	1056, 1262
Bbv12I	GWGCWC	2 cut(s)	516, 1564
BbvCI	CCTCAGC	1 cut(s)	1599
BbvI	GCAGC	3 cut(s)	72, 631, 889
BccI	CCATC	5 cut(s)	106, 554, 904, 1012, 1094
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	1480
BcoDI	GTCTC	5 cut(s)	118, 236, 1238, 1310, 1463
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	2 cut(s)	9, 848
BfoI	RGCGCY	1 cut(s)	893
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	4 cut(s)	86, 645, 903, 1080
BlpI	GCTNAGC	3 cut(s)	735, 746, 762
BlsI	GCNGC	4 cut(s)	87, 646, 904, 1081
Bme1390I	CCNGG	2 cut(s)	768, 1480
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	768, 1480
BmsI	GCATC	7 cut(s)	271, 520, 721, 865, 1280, 1369, 1585
BpiI	GAAGAC	2 cut(s)	1056, 1262
Bpu10I	CCTNAGC	2 cut(s)	1157, 1599
Bpu1102I	GCTNAGC	3 cut(s)	735, 746, 762
BpuEI	CTTGAG	5 cut(s)	212, 533, 1214, 1334, 1382
BpuMI	CCSGG	1 cut(s)	1480
Bsa29I	ATCGAT	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	1053
BsaI	GGTCTC	2 cut(s)	236, 1238
BsaJI	CCNNGG	5 cut(s)	24, 237, 336, 767, 1239
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	923
Bse3DI	GCAATG	4 cut(s)	654, 811, 985, 1518
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	5 cut(s)	24, 237, 336, 767, 1239
BseGI	GGATG	3 cut(s)	117, 880, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	923
BseMI	GCAATG	4 cut(s)	654, 811, 985, 1518
BseMII	CTCAG	6 cut(s)	178, 726, 776, 1171, 1458, 1590
BseRI	GAGGAG	1 cut(s)	1085
BseXI	GCAGC	3 cut(s)	72, 631, 889
BseYI	CCCAGC	1 cut(s)	920
BshFI	GGCC	2 cut(s)	236, 1238
BshNI	GGYRCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	516, 1564
BsiSI	CCGG	1 cut(s)	1479
BslFI	GGGAC	2 cut(s)	458, 1307
BslI	CCNNNNNNNGG	1 cut(s)	923
BsmAI	GTCTC	5 cut(s)	118, 236, 1238, 1310, 1463
BsmBI	CGTCTC	1 cut(s)	1463
BsmFI	GGGAC	2 cut(s)	458, 1307
BsnI	GGCC	2 cut(s)	236, 1238
Bso31I	GGTCTC	2 cut(s)	236, 1238
Bsp1286I	GDGCHC	2 cut(s)	516, 1564
Bsp143I	GATC	3 cut(s)	197, 1106, 1408
Bsp1720I	GCTNAGC	3 cut(s)	735, 746, 762
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	7 cut(s)	136, 333, 642, 924, 1034, 1079, 1129
BspANI	GGCC	2 cut(s)	236, 1238
BspCNI	CTCAG	6 cut(s)	177, 727, 775, 1170, 1459, 1591
BspDI	ATCGAT	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	958, 1411
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	1114
BspQI	GCTCTTC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	2 cut(s)	236, 1238
BsrBI	CCGCTC	1 cut(s)	1079
BsrDI	GCAATG	4 cut(s)	654, 811, 985, 1518
BssECI	CCNNGG	5 cut(s)	24, 237, 336, 767, 1239
BssMI	GATC	3 cut(s)	197, 1106, 1408
BssNI	GRCGYC	1 cut(s)	1053
BssT1I	CCWWGG	3 cut(s)	24, 237, 1239
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	609, 1261
Bst6I	CTCTTC	2 cut(s)	27, 248
BstACI	GRCGYC	1 cut(s)	1053
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	19, 260, 907, 1036, 1579
BstDEI	CTNAG	8 cut(s)	164, 735, 746, 762, 1157, 1467, 1538, 1599
BstDSI	CCRYGG	2 cut(s)	24, 336
BstF5I	GGATG	3 cut(s)	117, 880, 1023
BstH2I	RGCGCY	1 cut(s)	893
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	3 cut(s)	200, 1109, 1411
BstMAI	GTCTC	5 cut(s)	118, 236, 1238, 1310, 1463
BstMBI	GATC	3 cut(s)	197, 1106, 1408
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	766, 1478
BstV1I	GCAGC	3 cut(s)	72, 631, 889
BstV2I	GAAGAC	2 cut(s)	1056, 1262
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	236, 1238
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	2 cut(s)	24, 336
BtsCI	GGATG	3 cut(s)	117, 880, 1023
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	5 cut(s)	19, 260, 907, 1036, 1579
CciI	TCATGA	2 cut(s)	958, 1411
CfoI	GCGC	1 cut(s)	892
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	1583
CviAII	CATG	6 cut(s)	25, 133, 808, 959, 1042, 1412
DdeI	CTNAG	8 cut(s)	164, 735, 746, 762, 1157, 1467, 1538, 1599
DpnI	GATC	3 cut(s)	199, 1108, 1410
DpnII	GATC	3 cut(s)	197, 1106, 1408
DraI	TTTAAA	1 cut(s)	628
DrdI	GACNNNNNNGTC	1 cut(s)	1052
DseDI	GACNNNNNNGTC	1 cut(s)	1052
Eam1104I	CTCTTC	2 cut(s)	27, 248
EarI	CTCTTC	2 cut(s)	27, 248
Eco130I	CCWWGG	3 cut(s)	24, 237, 1239
Eco147I	AGGCCT	2 cut(s)	236, 1238
Eco31I	GGTCTC	2 cut(s)	236, 1238
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	24, 237, 1239
EcoT22I	ATGCAT	4 cut(s)	535, 813, 1384, 1443
ErhI	CCWWGG	3 cut(s)	24, 237, 1239
Esp3I	CGTCTC	1 cut(s)	1463
FaeI	CATG	6 cut(s)	28, 136, 811, 962, 1045, 1415
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 221, 253, 1223, 1255
FaqI	GGGAC	2 cut(s)	458, 1307
FatI	CATG	6 cut(s)	24, 132, 807, 958, 1041, 1411
FauI	CCCGC	4 cut(s)	129, 340, 1027, 1122
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	86, 645, 903, 1080
FokI	GGATG	3 cut(s)	124, 887, 1030
Fsp4HI	GCNGC	4 cut(s)	86, 645, 903, 1080
FspBI	CTAG	2 cut(s)	9, 848
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	4 cut(s)	86, 645, 903, 1080
GsaI	CCCAGC	1 cut(s)	924
HaeII	RGCGCY	1 cut(s)	893
HaeIII	GGCC	2 cut(s)	236, 1238
HapII	CCGG	1 cut(s)	1479
HgaI	GACGC	1 cut(s)	1583
HhaI	GCGC	1 cut(s)	892
Hin1I	GRCGYC	1 cut(s)	1053
Hin1II	CATG	6 cut(s)	28, 136, 811, 962, 1045, 1415
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HincII	GTYRAC	2 cut(s)	118, 541
HindII	GTYRAC	2 cut(s)	118, 541
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	6 cut(s)	5, 519, 716, 955, 1022, 1550
HpaII	CCGG	1 cut(s)	1479
HphI	GGTGA	4 cut(s)	575, 906, 1295, 1615
Hpy166II	GTNNAC	4 cut(s)	118, 412, 541, 1372
Hpy188I	TCNGA	7 cut(s)	167, 202, 487, 518, 1195, 1276, 1622
Hpy8I	GTNNAC	4 cut(s)	118, 412, 541, 1372
HpyAV	CCTTC	2 cut(s)	943, 1274
HpyCH4III	ACNGT	2 cut(s)	609, 1261
HpyCH4IV	ACGT	2 cut(s)	1053, 1472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	8 cut(s)	164, 735, 746, 762, 1157, 1467, 1538, 1599
HpySE526I	ACGT	2 cut(s)	1053, 1472
Hsp92I	GRCGYC	1 cut(s)	1053
Hsp92II	CATG	6 cut(s)	28, 136, 811, 962, 1045, 1415
HspAI	GCGC	1 cut(s)	890
Kzo9I	GATC	3 cut(s)	197, 1106, 1408
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	7 cut(s)	82, 93, 519, 887, 926, 937, 1076
Lsp1109I	GCAGC	3 cut(s)	72, 631, 889
LweI	GCATC	7 cut(s)	271, 520, 721, 865, 1280, 1369, 1585
MaeI	CTAG	2 cut(s)	9, 848
MaeII	ACGT	2 cut(s)	1053, 1472
MaeIII	GTNAC	1 cut(s)	1403
MalI	GATC	3 cut(s)	199, 1108, 1410
MbiI	CCGCTC	1 cut(s)	1079
MboI	GATC	3 cut(s)	197, 1106, 1408
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	516, 1564
MlyI	GAGTC	4 cut(s)	14, 513, 1031, 1559
MmeI	TCCRAC	3 cut(s)	541, 865, 1304
Mph1103I	ATGCAT	4 cut(s)	535, 813, 1384, 1443
MseI	TTAA	6 cut(s)	269, 465, 578, 627, 933, 1427
MslI	CAYNNNNRTG	4 cut(s)	528, 821, 1377, 1416
MspA1I	CMGCKG	2 cut(s)	644, 924
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	1479
MspR9I	CCNGG	2 cut(s)	768, 1480
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	800
NciI	CCSGG	1 cut(s)	1480
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	197, 1106, 1408
NlaIII	CATG	6 cut(s)	28, 136, 811, 962, 1045, 1415
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	1403
NsiI	ATGCAT	4 cut(s)	535, 813, 1384, 1443
PagI	TCATGA	2 cut(s)	958, 1411
PceI	AGGCCT	2 cut(s)	236, 1238
PciSI	GCTCTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	716, 955
PflFI	GACNNNGTC	1 cut(s)	866
PkrI	GCNGC	4 cut(s)	87, 646, 904, 1081
PleI	GAGTC	4 cut(s)	13, 513, 1030, 1558
PpsI	GAGTC	4 cut(s)	13, 513, 1030, 1558
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	866
RseI	CAYNNNNRTG	4 cut(s)	528, 821, 1377, 1416
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	6 cut(s)	269, 465, 578, 627, 933, 1427
SatI	GCNGC	4 cut(s)	86, 645, 903, 1080
Sau3AI	GATC	3 cut(s)	197, 1106, 1408
SchI	GAGTC	4 cut(s)	14, 513, 1031, 1559
ScrFI	CCNGG	2 cut(s)	768, 1480
SduI	GDGCHC	2 cut(s)	516, 1564
SfaNI	GCATC	7 cut(s)	271, 520, 721, 865, 1280, 1369, 1585
SmiMI	CAYNNNNRTG	4 cut(s)	528, 821, 1377, 1416
SmlI	CTYRAG	6 cut(s)	227, 464, 548, 1229, 1313, 1397
SmoI	CTYRAG	6 cut(s)	227, 464, 548, 1229, 1313, 1397
SpeI	ACTAGT	1 cut(s)	847
SseBI	AGGCCT	2 cut(s)	236, 1238
SsiI	CCGC	7 cut(s)	136, 333, 642, 924, 1034, 1079, 1129
SspMI	CTAG	2 cut(s)	9, 848
StuI	AGGCCT	2 cut(s)	236, 1238
StyD4I	CCNGG	2 cut(s)	766, 1478
StyI	CCWWGG	3 cut(s)	24, 237, 1239
TaaI	ACNGT	2 cut(s)	609, 1261
TaiI	ACGT	2 cut(s)	1056, 1475
TaqI	TCGA	3 cut(s)	188, 282, 1181
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	2 cut(s)	716, 955
Tru1I	TTAA	6 cut(s)	269, 465, 578, 627, 933, 1427
Tru9I	TTAA	6 cut(s)	269, 465, 578, 627, 933, 1427
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	1403
TseI	GCWGC	3 cut(s)	85, 644, 902
Tsp45I	GTSAC	1 cut(s)	1403
TspDTI	ATGAA	1 cut(s)	796
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	866
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	6 cut(s)	203, 481, 656, 1196, 1330, 1520
XspI	CTAG	2 cut(s)	9, 848
ZraI	GACGTC	1 cut(s)	1054
Zsp2I	ATGCAT	4 cut(s)	535, 813, 1384, 1443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.