Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015224.1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4918

Gene Structure 4918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015224.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1133 bp

gtaagcaatggaggcgaaagcaaatcaagaacattaccgataagatgtttgatcatttcaaaaacaaggaactcgaggttctgaagaaggccttgaagaatgaggaggagaatgaatccatgataaaagagatttttgacggtaggcaagttagctatgctgaatataagaaatctatggatttacagctgataaaaattgagcgaaacttagttgagctagaggagatcgtgtctgatgagtcaagagtcaatgaactgtgcaaaagacgcatagagatggagaagagactaaaaaatcttgatgtcttctgtgcggctatgtattctactctcaaatcgaaggagtctagtggtgtctcccttctcaaagaagctaagtctaggggaaggatgtcaagtgaggcaggcaccatggaggccgaaaaggttttgaagctcaaagagaagctttctgaatgccgactcctaaggaagcagctcttgaaagagagagagttatggaggatcaaggagaggaaaataaaagaactacaagaagaactcagagttgaaatagaagcgaattcgcgtgcgacttctgaatttgaagaaaaaaagaagacactcaaggaggccttgcaggccaagaggcagagtgtgcgtcaggtcaagaaggcattggatgaatttaatgctaaccgagatcgtgaattcgcttataagggagcacaaatagccaatgccagtggcaggtttgatagattgcatgctgaattaggaaagaaaattaattggtcagaagcagaagcagagagagattatctggacaagctacagtcagagatagatgagaaatgggacaatttaattgcttttcttgagacttgtcggaaaaattcaaaaatcactgatgatgtgaagccttgcctccgagtccactatgatgcatacattaaaacactcaagagtgacgatgatgattgtaaaatgttaaaaaagtatgtgcattttgttctacgtacaaccgagttctgctctaaacagatgtttgccggggttgattttatgtctccaatttctgctgcaatatcaaacatttttagcttcttcataggaaaagagacgaagtccaatagttctcttagatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

44.21

Weight (kDa)

9.17

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	409
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	514, 1121
AcsI	RAATTY	5 cut(s)	564, 583, 667, 691, 876
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	7 cut(s)	60, 96, 435, 486, 553, 589, 881
AluBI	AGCT	9 cut(s)	155, 189, 219, 376, 438, 450, 480, 813, 1085
AluI	AGCT	9 cut(s)	155, 189, 219, 376, 438, 450, 480, 813, 1085
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	5 cut(s)	282, 363, 856, 1055, 1096
AlwI	GGATC	2 cut(s)	514, 1121
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	4 cut(s)	89, 419, 614, 623
ApeKI	GCWGC	2 cut(s)	477, 1063
ApoI	RAATTY	5 cut(s)	564, 583, 667, 691, 876
AseI	ATTAAT	1 cut(s)	770
AsuC2I	CCSGG	1 cut(s)	1035
AvaI	CYCGRG	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	300, 607
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	489, 1050
BccI	CCATC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	1035
BcoDI	GTCTC	5 cut(s)	282, 363, 856, 1055, 1096
BfaI	CTAG	3 cut(s)	220, 350, 383
BfmI	CTRYAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	317, 478, 1064
BlsI	GCNGC	3 cut(s)	318, 479, 1065
Bme1390I	CCNGG	1 cut(s)	1035
BmeT110I	CYCGRG	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	1035
BmsI	GCATC	1 cut(s)	915
BpiI	GAAGAC	2 cut(s)	300, 607
BplI	GAGNNNNNCTC	2 cut(s)	1000, 1032
BpuEI	CTTGAG	3 cut(s)	592, 880, 928
BpuMI	CCSGG	1 cut(s)	1035
BsaAI	YACGTR	1 cut(s)	1000
BsaJI	CCNNGG	2 cut(s)	413, 1034
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	725
Bse21I	CCTNAGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	413, 1034
BseGI	GGATG	2 cut(s)	398, 669
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	3 cut(s)	118, 121, 238
BseXI	GCAGC	2 cut(s)	489, 1050
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	91, 421, 616, 625
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	1034
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	5 cut(s)	282, 363, 856, 1055, 1096
BsmBI	CGTCTC	1 cut(s)	1096
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	91, 421, 616, 625
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	51, 227, 506, 684, 1126
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	4 cut(s)	91, 421, 616, 625
BspCNI	CTCAG	1 cut(s)	557
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	514, 1121
BspT107I	GGYRCC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	413, 1034
BssMI	GATC	5 cut(s)	51, 227, 506, 684, 1126
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	142, 260, 818
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	1000
BstC8I	GCNNGC	4 cut(s)	408, 572, 623, 749
BstDEI	CTNAG	5 cut(s)	210, 377, 469, 544, 1123
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	398, 669
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	5 cut(s)	54, 230, 509, 687, 1129
BstMAI	GTCTC	5 cut(s)	282, 363, 856, 1055, 1096
BstMBI	GATC	5 cut(s)	51, 227, 506, 684, 1126
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 269, 622, 639, 715
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	1 cut(s)	1033
BstSFI	CTRYAG	1 cut(s)	814
BstSNI	TACGTA	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	489, 1050
BstV2I	GAAGAC	2 cut(s)	300, 607
BstX2I	RGATCY	1 cut(s)	1126
BstYI	RGATCY	1 cut(s)	1126
Bsu36I	CCTNAGG	1 cut(s)	469
BsuRI	GGCC	4 cut(s)	91, 421, 616, 625
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	398, 669
BtsIMutI	CAGTG	2 cut(s)	732, 887
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	4 cut(s)	408, 572, 623, 749
CseI	GACGC	2 cut(s)	278, 631
Csp6I	GTAC	1 cut(s)	1001
CspCI	CAANNNNNGTGG	2 cut(s)	708, 743
CviAII	CATG	3 cut(s)	120, 414, 748
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	5 cut(s)	210, 377, 469, 544, 1123
DpnI	GATC	5 cut(s)	53, 229, 508, 686, 1128
DpnII	GATC	5 cut(s)	51, 227, 506, 684, 1126
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco105I	TACGTA	1 cut(s)	1000
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	2 cut(s)	91, 616
Eco57I	CTGAAG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	73
EcoRI	GAATTC	2 cut(s)	564, 691
EcoT14I	CCWWGG	1 cut(s)	413
EcoT22I	ATGCAT	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	1096
FaeI	CATG	3 cut(s)	123, 417, 751
FalI	AAGNNNNNCTT	8 cut(s)	76, 108, 434, 466, 466, 498, 601, 633
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	3 cut(s)	119, 413, 747
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	317, 478, 1064
FokI	GGATG	2 cut(s)	405, 676
Fsp4HI	GCNGC	3 cut(s)	317, 478, 1064
FspBI	CTAG	3 cut(s)	220, 350, 383
GluI	GCNGC	3 cut(s)	317, 478, 1064
HaeIII	GGCC	4 cut(s)	91, 421, 616, 625
HapII	CCGG	1 cut(s)	1034
HgaI	GACGC	2 cut(s)	278, 631
Hin1II	CATG	3 cut(s)	123, 417, 751
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	6 cut(s)	115, 241, 248, 346, 464, 914
HpaII	CCGG	1 cut(s)	1034
Hpy166II	GTNNAC	1 cut(s)	918
Hpy188I	TCNGA	9 cut(s)	83, 237, 456, 547, 582, 780, 822, 872, 913
Hpy188III	TCNNGA	9 cut(s)	27, 245, 301, 483, 651, 688, 805, 859, 945
Hpy8I	GTNNAC	1 cut(s)	918
HpyAV	CCTTC	5 cut(s)	81, 336, 373, 383, 648
HpyCH4III	ACNGT	3 cut(s)	142, 260, 818
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	6 cut(s)	263, 621, 747, 928, 987, 1066
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 269, 622, 639, 715
HpyF3I	CTNAG	5 cut(s)	210, 377, 469, 544, 1123
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	3 cut(s)	123, 417, 751
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	51, 227, 506, 684, 1126
LmnI	GCTCC	1 cut(s)	706
LpnPI	CCDG	7 cut(s)	392, 607, 631, 717, 738, 790, 1047
Lsp1109I	GCAGC	2 cut(s)	489, 1050
LweI	GCATC	1 cut(s)	915
MaeI	CTAG	3 cut(s)	220, 350, 383
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	5 cut(s)	53, 229, 508, 686, 1128
MboI	GATC	5 cut(s)	51, 227, 506, 684, 1126
MboII	GAAGA	8 cut(s)	96, 108, 297, 300, 550, 601, 612, 1080
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	711
MlyI	GAGTC	5 cut(s)	250, 257, 355, 458, 923
MmeI	TCCRAC	1 cut(s)	850
Mph1103I	ATGCAT	1 cut(s)	930
MseI	TTAA	5 cut(s)	671, 770, 847, 935, 973
MslI	CAYNNNNRTG	2 cut(s)	277, 923
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	463
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	5 cut(s)	12, 269, 622, 639, 715
NciI	CCSGG	1 cut(s)	1035
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	5 cut(s)	51, 227, 506, 684, 1126
NlaIII	CATG	3 cut(s)	123, 417, 751
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	73
PceI	AGGCCT	2 cut(s)	91, 616
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	1 cut(s)	1107
PkrI	GCNGC	3 cut(s)	318, 479, 1065
PleI	GAGTC	5 cut(s)	249, 256, 354, 458, 922
PpsI	GAGTC	5 cut(s)	249, 256, 354, 458, 922
Ppu21I	YACGTR	1 cut(s)	1000
PshBI	ATTAAT	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	411
PspXI	VCTCGAGB	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	1126
PsyI	GACNNNGTC	1 cut(s)	1107
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
RseI	CAYNNNNRTG	2 cut(s)	277, 923
SaqAI	TTAA	5 cut(s)	671, 770, 847, 935, 973
SatI	GCNGC	3 cut(s)	317, 478, 1064
Sau3AI	GATC	5 cut(s)	51, 227, 506, 684, 1126
SchI	GAGTC	5 cut(s)	250, 257, 355, 458, 923
ScrFI	CCNGG	1 cut(s)	1035
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	1 cut(s)	915
SfcI	CTRYAG	1 cut(s)	814
SfiI	GGCCNNNNNGGCC	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	277, 923
SmlI	CTYRAG	4 cut(s)	73, 607, 859, 943
SmoI	CTYRAG	4 cut(s)	73, 607, 859, 943
SnaBI	TACGTA	1 cut(s)	1000
SphI	GCATGC	1 cut(s)	751
SseBI	AGGCCT	2 cut(s)	91, 616
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	3 cut(s)	220, 350, 383
StuI	AGGCCT	2 cut(s)	91, 616
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	142, 260, 818
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	2 cut(s)	74, 340
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	5 cut(s)	671, 770, 847, 935, 973
Tru9I	TTAA	5 cut(s)	671, 770, 847, 935, 973
TscAI	CASTG	2 cut(s)	732, 894
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	2 cut(s)	477, 1063
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	4 cut(s)	128, 269, 680, 1080
TspRI	CASTG	2 cut(s)	732, 894
Tth111I	GACNNNGTC	1 cut(s)	1107
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	5 cut(s)	564, 583, 667, 691, 876
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	3 cut(s)	220, 350, 383
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.