Rorug01G0013100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001468
Physical Location & Seq
Forward (+)
2141444 .. 2143804
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0013100.1

Sequence Viewer

Length: 999 bp
ATGAGAAAGCCAGAGTTGTCCGTGGGAAAAGACGTAAAAGCAAACAGTAACAGCAAGAATAAGATGATGAATAATAAGCTCAGGAAGGGATTGTGGTCGCCGGAGGAAGATGAAAAGTTGATGAGGTACATGTTGAGCAATGGACAAGGGTGTTGGAGTGACATTGCTAGAAACTCTGGTCTCCAAAGGTGTGGAAAGAGTTGTCGTCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAGCGTGGTGCATTTTCGCCTCAGGAAGAACACCTTATCATCCATTTTCATTCCATTCTTGGCAACAAGTGGTCACAGATTGCTGCACGTCTTCCAGGACGAACAGACAATGAAATCAAGAATTTTTGGAACTCTGCATTGAAAAAAAGGTTGAAAAATAACAACATTTCCACATCGACATCTTCACCAAACGAGAGTGATCATTCGTCGGAGCCGAATGTCAATATTGGGGGAGCAACGCCATTTATCCCCATGCACAATGAACATGACATGTTAATGAGCATGATGTACATGGACTCATCATCGTCCTCATCCTCAGCATCCATGCAAGTCATCAACACCAGCACATTCGCTCCTAACTTCTCTGTGCTTGACAGTTCCTCTTTACTGAACTACGTGAATCACACAGGCTTGACACAGCTACCTGAAGGGCAGTATGGGGATTACGGAAATTACTTGGAGGCCGGTCATAAAATGGGGATAGAAGGTGATCTTTGTCTTCCTCATCTTGAGACTAGTAGAAGAAGTTTAATAGAGAATAATAATGGTCAAGTAGTTGACAATATAAGCAATAACAATATCAACCACTTCCATAATGATAACAATAATAATTGCTTTACTAACACGGCGAGTAATATGAGCTTTAAAGTAGATGACGGGGACATATTTGGGCAAGCTGAAGCTGGAGGAAGCTTAAGAGTTGGAGAAGAATGGGATTTTGAGGGTTTCATGCAAGATATATCCTGCTTTCTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.23

Weight (kDa)

6.13

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 76 3.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 91 8.1e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 126 8.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 85 - 138 8.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 687, 939
AfaI GTAC 2 cut(s) 128, 530
AflII CTTAAG 1 cut(s) 934
AflIII ACRYGT 2 cut(s) 129, 510
AgsI TTSAA 2 cut(s) 382, 394
AhlI ACTAGT 1 cut(s) 755
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 6 cut(s) 79, 661, 882, 917, 923, 933
AluI AGCT 6 cut(s) 79, 661, 882, 917, 923, 933
Alw26I GTCTC 3 cut(s) 185, 223, 746
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 417, 740
AxyI CCTNAGG 1 cut(s) 261
BbsI GAAGAC 3 cut(s) 200, 323, 731
BbvCI CCTCAGC 1 cut(s) 556
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 882
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 185, 223, 746
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 2 cut(s) 168, 756
BfrI CTTAAG 1 cut(s) 934
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 569
BpiI GAAGAC 3 cut(s) 200, 323, 731
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 2 cut(s) 80, 556
BpuEI CTTGAG 3 cut(s) 224, 247, 770
BsaAI YACGTR 1 cut(s) 637
BsaI GGTCTC 2 cut(s) 185, 223
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse118I RCCGGY 1 cut(s) 704
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 145, 162
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 279, 551, 560
BseMI GCAATG 2 cut(s) 145, 162
BseMII CTCAG 3 cut(s) 94, 275, 570
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 704
BsiSI CCGG 2 cut(s) 101, 705
BslFI GGGAC 1 cut(s) 914
BsmAI GTCTC 3 cut(s) 185, 223, 746
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 1 cut(s) 704
Bso31I GGTCTC 2 cut(s) 185, 223
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 235, 439, 730
BspANI GGCC 1 cut(s) 704
BspCNI CTCAG 3 cut(s) 93, 274, 569
BspLI GGNNCC 1 cut(s) 453
BspTI CTTAAG 1 cut(s) 934
BspTNI GGTCTC 2 cut(s) 185, 223
BsrDI GCAATG 2 cut(s) 145, 162
BsrFI RCCGGY 1 cut(s) 704
BsrGI TGTACA 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 235, 439, 730
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 47, 617
BstAFI CTTAAG 1 cut(s) 934
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 4 cut(s) 80, 261, 556, 996
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 279, 551, 560
BstKTI GATC 3 cut(s) 238, 442, 733
BstMAI GTCTC 3 cut(s) 185, 223, 746
BstMBI GATC 3 cut(s) 235, 439, 730
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 133, 514
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 3 cut(s) 200, 323, 731
BstXI CCANNNNNNTGG 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 704
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 279, 551, 560
Cac8I GCNNGC 1 cut(s) 915
Cfr10I RCCGGY 1 cut(s) 704
Csp6I GTAC 2 cut(s) 127, 529
CviAII CATG 8 cut(s) 130, 493, 506, 511, 523, 532, 565, 970
CviQI GTAC 2 cut(s) 127, 529
DdeI CTNAG 4 cut(s) 80, 261, 556, 996
DpnI GATC 3 cut(s) 237, 441, 732
DpnII GATC 3 cut(s) 235, 439, 730
DraI TTTAAA 1 cut(s) 886
Eco31I GGTCTC 2 cut(s) 185, 223
Eco57I CTGAAG 2 cut(s) 687, 939
Eco81I CCTNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 8 cut(s) 133, 496, 509, 514, 526, 535, 568, 973
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 717, 749
FaqI GGGAC 1 cut(s) 914
FatI CATG 8 cut(s) 129, 492, 505, 510, 522, 531, 564, 969
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 266, 538, 547
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 168, 756
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 1 cut(s) 704
HapII CCGG 2 cut(s) 101, 705
Hin1II CATG 8 cut(s) 133, 496, 509, 514, 526, 535, 568, 973
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 931
HinfI GANTC 2 cut(s) 536, 640
HpaII CCGG 2 cut(s) 101, 705
HphI GGTGA 2 cut(s) 417, 740
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 4 cut(s) 82, 263, 358, 749
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 79, 662, 719
HpyCH4III ACNGT 2 cut(s) 47, 617
HpyCH4IV ACGT 3 cut(s) 33, 328, 636
HpyCH4V TGCA 6 cut(s) 251, 326, 377, 496, 568, 973
HpyF3I CTNAG 4 cut(s) 80, 261, 556, 996
HpySE526I ACGT 3 cut(s) 33, 328, 636
Hsp92II CATG 8 cut(s) 133, 496, 509, 514, 526, 535, 568, 973
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 235, 439, 730
LmnI GCTCC 3 cut(s) 451, 473, 598
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 569
MaeI CTAG 2 cut(s) 168, 756
MaeII ACGT 3 cut(s) 33, 328, 636
MaeIII GTNAC 3 cut(s) 47, 158, 312
MalI GATC 3 cut(s) 237, 441, 732
MboI GATC 3 cut(s) 235, 439, 730
MboII GAAGA 8 cut(s) 119, 200, 278, 323, 414, 731, 774, 959
MluCI AATT 3 cut(s) 361, 691, 850
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 4 cut(s) 134, 194, 429, 922
MseI TTAA 5 cut(s) 219, 515, 770, 885, 935
MslI CAYNNNNRTG 1 cut(s) 515
MspCI CTTAAG 1 cut(s) 934
MspI CCGG 2 cut(s) 101, 705
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
NdeII GATC 3 cut(s) 235, 439, 730
NlaIII CATG 8 cut(s) 133, 496, 509, 514, 526, 535, 568, 973
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 158, 312
NspI RCATGY 2 cut(s) 133, 514
PciI ACATGT 2 cut(s) 129, 510
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PfeI GAWTC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Ppu21I YACGTR 1 cut(s) 637
PscI ACATGT 2 cut(s) 129, 510
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 453
RsaI GTAC 2 cut(s) 128, 530
RsaNI GTAC 2 cut(s) 127, 529
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 5 cut(s) 219, 515, 770, 885, 935
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 3 cut(s) 235, 439, 730
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 336
SfaNI GCATC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 4 cut(s) 226, 239, 749, 934
SmoI CTYRAG 4 cut(s) 226, 239, 749, 934
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 3 cut(s) 361, 691, 850
SspI AATATT 1 cut(s) 466
SspMI CTAG 2 cut(s) 168, 756
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 47, 617
TaiI ACGT 3 cut(s) 36, 331, 639
TaqI TCGA 1 cut(s) 416
TasI AATT 3 cut(s) 361, 691, 850
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 5 cut(s) 219, 515, 770, 885, 935
Tru9I TTAA 5 cut(s) 219, 515, 770, 885, 935
TseFI GTSAC 2 cut(s) 158, 312
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 158, 312
TspDTI ATGAA 6 cut(s) 83, 126, 278, 366, 516, 958
TspGWI ACGGA 2 cut(s) 10, 702
Vha464I CTTAAG 1 cut(s) 934
XapI RAATTY 1 cut(s) 361
XceI RCATGY 2 cut(s) 133, 514
XspI CTAG 2 cut(s) 168, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.