RLG00000030668

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001468
Physical Location & Seq
Forward (+)
65418892 .. 65419810
919 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030668

Sequence Viewer

Length: 612 bp
ATGTCAAGTGAGGCAGGCACCATGGACGACGAAAAGGTTTTGAAGCACAAAGAGAAGGAAGCAGCTCTTGAAAGAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAAAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAAAAAAGAAGACACTCAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTACGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAGCCGAGATCGTGAATTCCCTTATAAGGGAGCACAAACAGCCAATGCCAGTGACAGGTTTGATAGATTGCATGCTGAATTAGAAAAGAAAATTAAGTGGTCACAAGCAGAGAGAGATAATCTGGACAAGCTACAGTCAAAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTAATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATCAAAACACTCAAGACTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTTCTACAACCGAGTTCTGCTCGATCAGAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.95

Weight (kDa)

9.05

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 103
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 5 cut(s) 151, 170, 254, 278, 457
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 289, 290, 318
AgsI TTSAA 5 cut(s) 43, 71, 140, 176, 462
AluBI AGCT 2 cut(s) 65, 394
AluI AGCT 2 cut(s) 65, 394
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 101
AoxI GGCC 2 cut(s) 201, 210
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 5 cut(s) 151, 170, 254, 278, 457
AsuNHI GCTAGC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpuEI CTTGAG 3 cut(s) 179, 461, 509
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 290, 318
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 289, 290, 318
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 203, 212
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 289, 290, 318
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 2 cut(s) 203, 212
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 93, 271, 596
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 203, 212
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 93, 271, 596
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 399
BstC8I GCNNGC 5 cut(s) 16, 159, 210, 265, 336
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 3 cut(s) 96, 274, 599
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 93, 271, 596
BstMWI GCNNNNNNNGC 2 cut(s) 209, 302
BstNSI RCATGY 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 395
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 203, 212
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 5 cut(s) 16, 159, 210, 265, 336
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 22, 335
CviJI RGCY 7 cut(s) 65, 203, 212, 267, 305, 394, 484
CviKI_1 RGCY 7 cut(s) 65, 203, 212, 267, 305, 394, 484
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 131
DpnI GATC 3 cut(s) 95, 273, 598
DpnII GATC 3 cut(s) 93, 271, 596
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 203
EcoRI GAATTC 2 cut(s) 151, 278
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 25, 338
FaiI YATR 7 cut(s) 23, 88, 288, 336, 504, 511, 564
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 188, 220
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 21, 334
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 264
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 203, 212
Hin1II CATG 2 cut(s) 25, 338
HinfI GANTC 1 cut(s) 495
Hpy166II GTNNAC 2 cut(s) 227, 499
Hpy188I TCNGA 5 cut(s) 134, 169, 453, 494, 601
Hpy188III TCNNGA 6 cut(s) 68, 238, 275, 386, 440, 526
Hpy8I GTNNAC 2 cut(s) 227, 499
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 49, 235
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 208, 334, 509, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 302
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 25, 338
Kzo9I GATC 3 cut(s) 93, 271, 596
LmnI GCTCC 2 cut(s) 100, 293
LpnPI CCDG 5 cut(s) 194, 218, 304, 325, 371
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 496
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 314, 363
MalI GATC 3 cut(s) 95, 273, 598
MbiI CCGCTC 1 cut(s) 103
MboI GATC 3 cut(s) 93, 271, 596
MboII GAAGA 3 cut(s) 137, 188, 199
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 9 cut(s) 151, 170, 254, 278, 341, 354, 424, 429, 457
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 5 cut(s) 4, 84, 193, 210, 500
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 4 cut(s) 258, 357, 428, 554
MslI CAYNNNNRTG 1 cut(s) 504
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 209, 302
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 93, 271, 596
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 2 cut(s) 25, 338
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 314, 363
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PceI AGGCCT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PsiI TTATAA 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 4 cut(s) 258, 357, 428, 554
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 93, 271, 596
SchI GAGTC 1 cut(s) 504
SduI GDGCHC 1 cut(s) 298
SetI ASST 6 cut(s) 39, 67, 232, 237, 323, 396
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 395
SfiI GGCCNNNNNGGCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 3 cut(s) 194, 440, 524
SmoI CTYRAG 3 cut(s) 194, 440, 524
SphI GCATGC 1 cut(s) 338
Sse9I AATT 9 cut(s) 151, 170, 254, 278, 341, 354, 424, 429, 457
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 264
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 399
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 595
TasI AATT 9 cut(s) 151, 170, 254, 278, 341, 354, 424, 429, 457
Tru1I TTAA 4 cut(s) 258, 357, 428, 554
Tru9I TTAA 4 cut(s) 258, 357, 428, 554
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 314, 363
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 314, 363
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 319
XapI RAATTY 5 cut(s) 151, 170, 254, 278, 457
XceI RCATGY 1 cut(s) 338
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.