Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

1899865 .. 1900278

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGATCAGTGAAAATGGGGCGTGGACTACCTCTGGTTGTTGCTCAGAATTCGAAACTGGACAGTAGCAGCGTTACAATGGAATCATCTTCGAGATCAAACTTGGTGCTTGGGTCCAAGCGAAAGGCTTTGGACCGTGTCGGTAAGAGGTATGTCTCTAACTCGGAACCTCTACTTCAGGTTGATGATGGTATGCAGCTTGTTTTGCAACATAAGAATGGGCAGCTGTACATACTAGGGAAGTCTCAACTAAGTTTGGCACTATCGGCTGGGCCCCATCGGTACTCCCAGGCACTATACCATGGGCCGGGTTCACGACCCACCATGGCGGGGCTCATATGGGATACCACCCCGGGCACCCAGGGCCCGGGACAGGCCAGCACAGCCCAACGATTTACACAGCAGGAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.65

Weight (kDa)

10.06

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	230, 284
AfiI	CCNNNNNNNGG	4 cut(s)	307, 330, 367, 373
AjnI	CCWGG	2 cut(s)	288, 360
AluBI	AGCT	2 cut(s)	199, 226
AluI	AGCT	2 cut(s)	199, 226
Alw26I	GTCTC	2 cut(s)	160, 249
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	2 cut(s)	352, 367
AoxI	GGCC	4 cut(s)	272, 305, 364, 375
ApaI	GGGCCC	2 cut(s)	276, 368
ApeKI	GCWGC	3 cut(s)	69, 196, 223
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	7 cut(s)	114, 133, 272, 273, 305, 364, 365
AsuC2I	CCSGG	5 cut(s)	309, 353, 354, 368, 369
AsuII	TTCGAA	1 cut(s)	53
AvaI	CYCGRG	2 cut(s)	352, 367
AvaII	GGWCC	2 cut(s)	114, 133
BaeGI	GKGCMC	3 cut(s)	276, 359, 368
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	3 cut(s)	276, 336, 368
BbvI	GCAGC	3 cut(s)	81, 208, 235
BccI	CCATC	2 cut(s)	182, 285
BciT130I	CCWGG	2 cut(s)	290, 362
BciVI	GTATCC	1 cut(s)	337
BcnI	CCSGG	5 cut(s)	309, 353, 354, 368, 369
BcoDI	GTCTC	2 cut(s)	160, 249
BfaI	CTAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	70, 197, 224
BlsI	GCNGC	3 cut(s)	71, 198, 225
Bme1390I	CCNGG	7 cut(s)	290, 309, 353, 354, 362, 368, 369
Bme18I	GGWCC	2 cut(s)	114, 133
BmeT110I	CYCGRG	2 cut(s)	352, 367
BmgT120I	GGNCC	7 cut(s)	114, 133, 272, 273, 305, 364, 365
BmiI	GGNNCC	6 cut(s)	115, 168, 274, 275, 358, 366
BmrFI	CCNGG	7 cut(s)	290, 309, 353, 354, 362, 368, 369
Bpu14I	TTCGAA	1 cut(s)	53
BpuMI	CCSGG	5 cut(s)	309, 353, 354, 368, 369
BsaJI	CCNNGG	8 cut(s)	288, 301, 324, 351, 352, 360, 361, 367
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 330, 367, 373
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	290, 362
BseDI	CCNNGG	8 cut(s)	288, 301, 324, 351, 352, 360, 361, 367
BseLI	CCNNNNNNNGG	4 cut(s)	307, 330, 367, 373
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	63
BseSI	GKGCMC	3 cut(s)	276, 359, 368
BseXI	GCAGC	3 cut(s)	81, 208, 235
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	4 cut(s)	274, 307, 366, 377
BshNI	GGYRCC	1 cut(s)	356
BsiHKCI	CYCGRG	2 cut(s)	352, 367
BsiSI	CCGG	3 cut(s)	308, 353, 368
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	307, 330, 367, 373
BsmAI	GTCTC	2 cut(s)	160, 249
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	4 cut(s)	274, 307, 366, 377
BsoBI	CYCGRG	2 cut(s)	352, 367
Bsp119I	TTCGAA	1 cut(s)	53
Bsp120I	GGGCCC	2 cut(s)	272, 364
Bsp1286I	GDGCHC	4 cut(s)	276, 336, 359, 368
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	5, 95
Bsp19I	CCATGG	2 cut(s)	301, 324
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	4 cut(s)	274, 307, 366, 377
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	6 cut(s)	115, 168, 274, 275, 358, 366
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	356
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	8 cut(s)	288, 301, 324, 351, 352, 360, 361, 367
BssMI	GATC	2 cut(s)	5, 95
BssT1I	CCWWGG	2 cut(s)	301, 324
Bst2UI	CCWGG	2 cut(s)	290, 362
Bst4CI	ACNGT	2 cut(s)	65, 137
BstAUI	TGTACA	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	45, 251
BstDSI	CCRYGG	2 cut(s)	301, 324
BstKTI	GATC	2 cut(s)	8, 98
BstMAI	GTCTC	2 cut(s)	160, 249
BstMBI	GATC	2 cut(s)	5, 95
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 266, 363, 383
BstNI	CCWGG	2 cut(s)	290, 362
BstSCI	CCNGG	7 cut(s)	288, 307, 351, 352, 360, 366, 367
BstSLI	GKGCMC	3 cut(s)	276, 359, 368
BstV1I	GCAGC	3 cut(s)	81, 208, 235
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	274, 307, 366, 377
BtgI	CCRYGG	2 cut(s)	301, 324
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	379
Cfr13I	GGNCC	7 cut(s)	114, 133, 272, 273, 305, 364, 365
Cfr9I	CCCGGG	2 cut(s)	352, 367
Csp6I	GTAC	2 cut(s)	229, 283
CviAII	CATG	2 cut(s)	302, 325
CviQI	GTAC	2 cut(s)	229, 283
DdeI	CTNAG	2 cut(s)	45, 251
DpnI	GATC	2 cut(s)	7, 97
DpnII	GATC	2 cut(s)	5, 95
Eco130I	CCWWGG	2 cut(s)	301, 324
Eco24I	GRGCYC	3 cut(s)	276, 336, 368
Eco47I	GGWCC	2 cut(s)	114, 133
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	2 cut(s)	352, 367
EcoO109I	RGGNCCY	2 cut(s)	273, 364
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	288, 360
EcoT14I	CCWWGG	2 cut(s)	301, 324
EcoT38I	GRGCYC	3 cut(s)	276, 336, 368
ErhI	CCWWGG	2 cut(s)	301, 324
FaeI	CATG	2 cut(s)	305, 328
FaiI	YATR	9 cut(s)	153, 194, 213, 233, 298, 303, 326, 338, 340
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	2 cut(s)	301, 324
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	70, 197, 224
FriOI	GRGCYC	3 cut(s)	276, 336, 368
Fsp4HI	GCNGC	3 cut(s)	70, 197, 224
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	3 cut(s)	70, 197, 224
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	274, 307, 366, 377
HapII	CCGG	3 cut(s)	308, 353, 368
Hin1II	CATG	2 cut(s)	305, 328
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	308, 353, 368
Hpy166II	GTNNAC	2 cut(s)	26, 314
Hpy188I	TCNGA	2 cut(s)	48, 166
Hpy188III	TCNNGA	2 cut(s)	93, 315
Hpy8I	GTNNAC	2 cut(s)	26, 314
HpyCH4III	ACNGT	2 cut(s)	65, 137
HpyCH4V	TGCA	2 cut(s)	196, 208
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 266, 363, 383
HpyF3I	CTNAG	2 cut(s)	45, 251
Hsp92II	CATG	2 cut(s)	305, 328
Kzo9I	GATC	2 cut(s)	5, 95
Lsp1109I	GCAGC	3 cut(s)	81, 208, 235
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	7, 97
MboI	GATC	2 cut(s)	5, 95
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	4 cut(s)	276, 336, 359, 368
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	4 cut(s)	42, 141, 180, 400
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	3 cut(s)	308, 353, 368
MspR9I	CCNGG	7 cut(s)	290, 309, 353, 354, 362, 368, 369
MvaI	CCWGG	2 cut(s)	290, 362
MwoI	GCNNNNNNNGC	4 cut(s)	205, 266, 363, 383
NciI	CCSGG	5 cut(s)	309, 353, 354, 368, 369
NcoI	CCATGG	2 cut(s)	301, 324
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	2 cut(s)	5, 95
NlaIII	CATG	2 cut(s)	305, 328
NlaIV	GGNNCC	6 cut(s)	115, 168, 274, 275, 358, 366
NspV	TTCGAA	1 cut(s)	53
PasI	CCCWGGG	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	71, 198, 225
Psp6I	CCWGG	2 cut(s)	288, 360
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	288, 360
PspN4I	GGNNCC	6 cut(s)	115, 168, 274, 275, 358, 366
PspOMI	GGGCCC	2 cut(s)	272, 364
PspPI	GGNCC	7 cut(s)	114, 133, 272, 273, 305, 364, 365
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	230, 284
RsaNI	GTAC	2 cut(s)	229, 283
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	3 cut(s)	70, 197, 224
Sau3AI	GATC	2 cut(s)	5, 95
Sau96I	GGNCC	7 cut(s)	114, 133, 272, 273, 305, 364, 365
ScrFI	CCNGG	7 cut(s)	290, 309, 353, 354, 362, 368, 369
SduI	GDGCHC	4 cut(s)	276, 336, 359, 368
SetI	ASST	6 cut(s)	34, 152, 172, 183, 201, 228
SfuI	TTCGAA	1 cut(s)	53
SinI	GGWCC	2 cut(s)	114, 133
SmaI	CCCGGG	2 cut(s)	354, 369
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	7 cut(s)	288, 307, 351, 352, 360, 366, 367
StyI	CCWWGG	2 cut(s)	301, 324
TaaI	ACNGT	2 cut(s)	65, 137
TaqI	TCGA	2 cut(s)	53, 92
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	3 cut(s)	69, 196, 223
TspMI	CCCGGG	2 cut(s)	352, 367
TspRI	CASTG	1 cut(s)	15
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	114, 133
XapI	RAATTY	1 cut(s)	49
XmaI	CCCGGG	2 cut(s)	352, 367
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.