Rh1CG019900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001468
Physical Location & Seq
Forward (+)
3334669 .. 3339253
4585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG019900.1

Sequence Viewer

Length: 384 bp
ATGATGATGGGAGAGAAGCAAATAAGAGAGAATCGAGAAGAGGAAGCCCCGCCATGCAGACGCTGCCTAAAAAAGGCATTCAATGAGTTTCATGCTAATGGTGAAATGCCTTATATGGGAGCACGATCAGCCAATGCCAATGACAAGTTAAAGAGATTGCGTGCTGAATTAGAAAAGAAAAATAAGTGCTCACAAGCAGAGAGAGATAAGCGGGACAAGCTACATTCAGAGATAATTGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAATATTCAAAGATCACTGATGATGTAAAACACTTATGCTCCGAGTCCACTATGATGCATATATTGACAAACGCAGGACTGAAAATGATGAATGTGAACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.81

Weight (kDa)

9.18

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 211
AfiI CCNNNNNNNGG 2 cut(s) 73, 116
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 82, 288
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 2 cut(s) 124, 191
AlwNI CAGNNNCTG 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AsuHPI GGTGA 1 cut(s) 113
Bbv12I GWGCWC 2 cut(s) 124, 191
BbvI GCAGC 1 cut(s) 50
BfrI CTTAAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmsI GCATC 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 116
BseLI CCNNNNNNNGG 2 cut(s) 73, 116
BseXI GCAGC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 124, 191
BslFI GGGAC 2 cut(s) 227, 260
BslI CCNNNNNNNGG 2 cut(s) 73, 116
BsmFI GGGAC 2 cut(s) 227, 260
BsmI GAATGC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 124, 191
Bsp143I GATC 2 cut(s) 125, 291
BspACI CCGC 2 cut(s) 50, 211
BspTI CTTAAG 1 cut(s) 266
BssMI GATC 2 cut(s) 125, 291
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 71
BstKTI GATC 2 cut(s) 128, 294
BstMBI GATC 2 cut(s) 125, 291
BstMWI GCNNNNNNNGC 3 cut(s) 63, 128, 217
BstV1I GCAGC 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 63
CseI GACGC 1 cut(s) 69
CviAII CATG 2 cut(s) 54, 92
CviJI RGCY 3 cut(s) 47, 131, 220
CviKI_1 RGCY 3 cut(s) 47, 131, 220
DpnI GATC 2 cut(s) 127, 293
DpnII GATC 2 cut(s) 125, 291
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 2 cut(s) 57, 95
FaiI YATR 8 cut(s) 55, 93, 114, 116, 316, 332, 339, 341
FaqI GGGAC 2 cut(s) 227, 260
FatI CATG 2 cut(s) 53, 91
FauI CCCGC 2 cut(s) 57, 204
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HgaI GACGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 57, 95
HinfI GANTC 2 cut(s) 31, 323
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 327, 376
Hpy188I TCNGA 2 cut(s) 229, 322
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 327, 376
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 57, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 128, 217
Hsp92II CATG 2 cut(s) 57, 95
Kzo9I GATC 2 cut(s) 125, 291
LmnI GCTCC 2 cut(s) 119, 323
LpnPI CCDG 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 324
MalI GATC 2 cut(s) 127, 293
MboI GATC 2 cut(s) 125, 291
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 124, 191
MluCI AATT 3 cut(s) 167, 234, 250
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 3 cut(s) 149, 267, 382
MslI CAYNNNNRTG 2 cut(s) 96, 332
MspCI CTTAAG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 63, 128, 217
NdeII GATC 2 cut(s) 125, 291
NlaIII CATG 2 cut(s) 57, 95
NsiI ATGCAT 1 cut(s) 339
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 63
RseI CAYNNNNRTG 2 cut(s) 96, 332
SaqAI TTAA 3 cut(s) 149, 267, 382
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 125, 291
SchI GAGTC 1 cut(s) 332
SduI GDGCHC 2 cut(s) 124, 191
SetI ASST 1 cut(s) 222
SfaNI GCATC 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 96, 332
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 167, 234, 250
SsiI CCGC 2 cut(s) 50, 211
SspI AATATT 1 cut(s) 284
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 167, 234, 250
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 149, 267, 382
Tru9I TTAA 3 cut(s) 149, 267, 382
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 80, 383
TspRI CASTG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.