Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

2520157 .. 2521472

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTGTCGGCGGATGAGGCAGGCACCATGGACGAAGAGGTTTTCAAGCTTAAAGAGAAGCTTTGTCAATGCCAACTCGAAAGGGAGCAGCTCCTGAGAGAGAAAGAGAGCTGGATGATCAAGGAGCAACTTGTGATGCGGGAAAAAGAAGAAGTAGAAGAAAAGCTCAGAATTGAAATAGAGGCGAATTTGTGCGCAAGATCTGAATTTGAAAAAAAAAGAAGCCACTCAAGGAGGCCTTGGAGACCAAAAAGAAGAGTTTACCTAAAAAACGCATTCGATGAGTTTCATGCTAATCGTGAAATGCCTTATATGGGAGCACGATCAGACAATGCCAATGACAAGTTAAAGAGAATGCGTGCTCAATTAGAAAAGGAAAATAAGTGCTCACAAGTAGAGATAGATAAGCTGGACAAGCTACATTCAGAGATAATTGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTCGTGTGAAAAATTCAAAACTCACTGATGATGTAAAACCCTTGCTCCGAGTCCACTATGATGCTTATATTGACAAACTCAGGACTGAAGATGATGATTGTGAACTGATAAGAAAGTATGTGCATTTTGTTCTACAACCGGGTTCTGCTCACAAGCAAAATGAGATGTTTGCCGGGGTTGATTTTTTATCTCCAATTTCTGCTGCAATGTCAAAAATTTTTAACATCTTCCTGAGAAAAAAGACAGAGTCCGATGGTTCTCTTATCTATAACACAAGTTCTACCAACAAGGATGCTAAGCATAAACATCATGCAAGAGGAAGAGAGGACGACGAGTCTGAACATCCTGGCGAAGCCTCAATAGGAAAGAAGCTTGGGACTTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

33.47

Weight (kDa)

8.43

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	11, 139
AcsI	RAATTY	4 cut(s)	187, 206, 481, 684
AcuI	CTGAAG	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	46, 176, 212, 486
AhdI	GACNNNNNGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	8 cut(s)	49, 61, 91, 111, 166, 409, 418, 841
AluI	AGCT	8 cut(s)	49, 61, 91, 111, 166, 409, 418, 841
Alw21I	GWGCWC	3 cut(s)	322, 364, 389
Alw26I	GTCTC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	88, 671
ApoI	RAATTY	4 cut(s)	187, 206, 481, 684
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	609, 643
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	3 cut(s)	322, 364, 389
BbvI	GCAGC	2 cut(s)	100, 658
BccI	CCATC	1 cut(s)	716
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	609, 643
BcoDI	GTCTC	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	89, 672
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	2 cut(s)	90, 673
Bme1390I	CCNGG	3 cut(s)	609, 643, 816
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	609, 643, 816
BmsI	GCATC	3 cut(s)	126, 520, 751
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	609, 643
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	27, 239, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	3 cut(s)	27, 239, 642
BseGI	GGATG	4 cut(s)	19, 120, 766, 811
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	4 cut(s)	86, 181, 562, 692
BseXI	GCAGC	2 cut(s)	100, 658
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	3 cut(s)	322, 364, 389
BsiSI	CCGG	2 cut(s)	608, 642
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	2 cut(s)	275, 360
BsnI	GGCC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	322, 364, 389
Bsp143I	GATC	3 cut(s)	117, 200, 323
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	2 cut(s)	11, 139
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	4 cut(s)	87, 180, 561, 693
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	681
BssECI	CCNNGG	3 cut(s)	27, 239, 642
BssMI	GATC	3 cut(s)	117, 200, 323
BssSI	CACGAG	1 cut(s)	471
BssT1I	CCWWGG	2 cut(s)	27, 239
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	816
Bst6I	CTCTTC	3 cut(s)	30, 250, 784
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	22, 360
BstDEI	CTNAG	5 cut(s)	95, 167, 548, 701, 765
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	19, 120, 766, 811
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	3 cut(s)	120, 203, 326
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	117, 200, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 415
BstNI	CCWGG	1 cut(s)	816
BstSCI	CCNGG	3 cut(s)	607, 641, 814
BstV1I	GCAGC	2 cut(s)	100, 658
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	19, 120, 766, 811
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	22, 360
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	197
CviAII	CATG	3 cut(s)	28, 290, 779
DdeI	CTNAG	5 cut(s)	95, 167, 548, 701, 765
DpnI	GATC	3 cut(s)	119, 202, 325
DpnII	GATC	3 cut(s)	117, 200, 323
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	3 cut(s)	30, 250, 784
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	3 cut(s)	30, 250, 784
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	27, 239
Eco147I	AGGCCT	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	27, 239
ErhI	CCWWGG	2 cut(s)	27, 239
FaeI	CATG	3 cut(s)	31, 293, 782
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 223, 255
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	27, 289, 778
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	89, 672
FokI	GGATG	4 cut(s)	26, 127, 773, 798
Fsp4HI	GCNGC	2 cut(s)	89, 672
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	89, 672
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	2 cut(s)	608, 642
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	31, 293, 782
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	3 cut(s)	47, 59, 839
HinfI	GANTC	4 cut(s)	469, 519, 716, 803
HpaII	CCGG	2 cut(s)	608, 642
Hpy166II	GTNNAC	3 cut(s)	262, 523, 572
Hpy188I	TCNGA	7 cut(s)	170, 205, 328, 427, 518, 721, 808
Hpy188III	TCNNGA	4 cut(s)	94, 299, 550, 700
Hpy8I	GTNNAC	3 cut(s)	262, 523, 572
Hpy99I	CGWCG	1 cut(s)	803
HpyCH4V	TGCA	3 cut(s)	592, 674, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 415
HpyF3I	CTNAG	5 cut(s)	95, 167, 548, 701, 765
Hsp92II	CATG	3 cut(s)	31, 293, 782
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 200, 323
LmnI	GCTCC	5 cut(s)	85, 96, 124, 317, 519
Lsp1109I	GCAGC	2 cut(s)	100, 658
LweI	GCATC	3 cut(s)	126, 520, 751
MalI	GATC	3 cut(s)	119, 202, 325
MboI	GATC	3 cut(s)	117, 200, 323
MboII	GAAGA	7 cut(s)	47, 161, 170, 267, 569, 688, 801
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	3 cut(s)	322, 364, 389
MluCI	AATT	9 cut(s)	171, 187, 206, 365, 432, 448, 481, 663, 684
MlyI	GAGTC	4 cut(s)	463, 528, 725, 812
MnlI	CCTC	7 cut(s)	10, 31, 175, 228, 779, 787, 835
MseI	TTAA	4 cut(s)	51, 347, 465, 690
MslI	CAYNNNNRTG	1 cut(s)	528
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	608, 642
MspR9I	CCNGG	3 cut(s)	609, 643, 816
Mva1269I	GAATGC	2 cut(s)	275, 360
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	17, 415
NciI	CCSGG	2 cut(s)	609, 643
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	3 cut(s)	117, 200, 323
NlaIII	CATG	3 cut(s)	31, 293, 782
NlaIV	GGNNCC	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	238
PctI	GAATGC	2 cut(s)	275, 360
PflFI	GACNNNGTC	1 cut(s)	715
PkrI	GCNGC	2 cut(s)	90, 673
PleI	GAGTC	4 cut(s)	463, 527, 724, 811
PpsI	GAGTC	4 cut(s)	463, 527, 724, 811
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	51, 347, 465, 690
SatI	GCNGC	2 cut(s)	89, 672
Sau3AI	GATC	3 cut(s)	117, 200, 323
SchI	GAGTC	4 cut(s)	463, 528, 725, 812
ScrFI	CCNGG	3 cut(s)	609, 643, 816
SduI	GDGCHC	3 cut(s)	322, 364, 389
SfaNI	GCATC	3 cut(s)	126, 520, 751
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	2 cut(s)	229, 464
SmoI	CTYRAG	2 cut(s)	229, 464
Sse9I	AATT	9 cut(s)	171, 187, 206, 365, 432, 448, 481, 663, 684
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	11, 139
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	607, 641, 814
StyI	CCWWGG	2 cut(s)	27, 239
TaqI	TCGA	2 cut(s)	78, 279
TasI	AATT	9 cut(s)	171, 187, 206, 365, 432, 448, 481, 663, 684
Tru1I	TTAA	4 cut(s)	51, 347, 465, 690
Tru9I	TTAA	4 cut(s)	51, 347, 465, 690
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	88, 671
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	715
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	4 cut(s)	187, 206, 481, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.