Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

2938754 .. 2941225

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCAAGTGAGGCAGGCACCGTGAAGTACGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGATATGGAGGATCAAGGAGCGGAAAATAAAAGAACTACAAGAAGAACTCATAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAGAAAAGAAGACACTTAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCGCTTATAAGGGAGCACAACTAGCCAATGCCAGTGGCAGGTTTGATAGATTGAATGCTGAATTAGAAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAAGCAGAGAGAGATTATCTGGACAAGCTACAGTCAGACATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGCGTGACGATGATGATTGTAAAATGTTAAAAAAGTATGTGCATTTTGTTCTACAACCGAGTTCTGCTCAGAAACAGATGTGGTTATTCAGGGACTGGATTGAAGATGATGGACCTCTTGCTTGTGTCTGGGGTTTCAAATTACTATCTTGCTTTTTCAGCTTGCTGGTTTCTTCCCAGTGCAAGTCTCTTGGACTTGGAATTTTCCGTGATGTGAAGCTTGTCCAAGTCTTGAGGAAAGATAATAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

31.83

Weight (kDa)

8.79

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	17
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	6 cut(s)	172, 191, 275, 299, 490, 759
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	8 cut(s)	43, 94, 161, 197, 355, 495, 662, 697
AluBI	AGCT	6 cut(s)	46, 58, 88, 427, 720, 778
AluI	AGCT	6 cut(s)	46, 58, 88, 427, 720, 778
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	470, 750
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	654
AoxI	GGCC	2 cut(s)	222, 231
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	6 cut(s)	172, 191, 275, 299, 490, 759
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	470, 750
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpuEI	CTTGAG	3 cut(s)	494, 542, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	333, 659, 736
Bse21I	CCTNAGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	277, 813
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	3 cut(s)	333, 659, 736
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	224, 233
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	467, 665
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	470, 750
BsmFI	GGGAC	2 cut(s)	467, 665
BsmI	GAATGC	2 cut(s)	71, 361
BsnI	GGCC	2 cut(s)	224, 233
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	114, 292
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	224, 233
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	333, 659, 736
BssMI	GATC	2 cut(s)	114, 292
Bst4CI	ACNGT	2 cut(s)	22, 432
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstC8I	GCNNGC	4 cut(s)	16, 180, 231, 722
BstDEI	CTNAG	2 cut(s)	77, 627
BstF5I	GGATG	2 cut(s)	277, 813
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	117, 295
BstMAI	GTCTC	2 cut(s)	470, 750
BstMBI	GATC	2 cut(s)	114, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 247, 323, 717
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	224, 233
BtsCI	GGATG	2 cut(s)	277, 813
BtsIMutI	CAGTG	3 cut(s)	340, 501, 743
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	16, 180, 231, 722
CaiI	CAGNNNCTG	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	671
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	77, 627
DpnI	GATC	2 cut(s)	116, 294
DpnII	GATC	2 cut(s)	114, 292
Eco147I	AGGCCT	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	671
Eco81I	CCTNAGG	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	172, 299
EcoT22I	ATGCAT	1 cut(s)	544
FaiI	YATR	7 cut(s)	109, 155, 309, 440, 537, 544, 597
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 74, 106, 209, 241
FaqI	GGGAC	2 cut(s)	467, 665
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	224, 233
HgaI	GACGC	1 cut(s)	239
HindIII	AAGCTT	2 cut(s)	56, 776
HinfI	GANTC	2 cut(s)	72, 528
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	7 cut(s)	64, 190, 388, 436, 486, 527, 630
Hpy188III	TCNNGA	6 cut(s)	91, 259, 296, 419, 473, 790
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	22, 432
HpyCH4V	TGCA	4 cut(s)	229, 542, 601, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 247, 323, 717
HpyF3I	CTNAG	2 cut(s)	77, 627
Kzo9I	GATC	2 cut(s)	114, 292
LmnI	GCTCC	2 cut(s)	121, 314
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	2 cut(s)	116, 294
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	2 cut(s)	114, 292
MboII	GAAGA	6 cut(s)	158, 209, 212, 220, 674, 723
MhlI	GDGCHC	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	66, 537
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	7 cut(s)	4, 105, 214, 231, 533, 684, 786
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	6 cut(s)	216, 279, 378, 461, 549, 587
MslI	CAYNNNNRTG	1 cut(s)	537
MspCI	CTTAAG	1 cut(s)	215
Mva1269I	GAATGC	2 cut(s)	71, 361
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	230, 247, 323, 717
NdeII	GATC	2 cut(s)	114, 292
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	2 cut(s)	71, 361
PkrI	GCNGC	1 cut(s)	87
PleI	GAGTC	2 cut(s)	66, 536
PpsI	GAGTC	2 cut(s)	66, 536
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	654
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	6 cut(s)	216, 279, 378, 461, 549, 587
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	114, 292
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	2 cut(s)	66, 537
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	428
SfiI	GGCCNNNNNGGCC	1 cut(s)	230
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	4 cut(s)	215, 473, 557, 790
SmoI	CTYRAG	4 cut(s)	215, 473, 557, 790
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	22, 432
Tru1I	TTAA	6 cut(s)	216, 279, 378, 461, 549, 587
Tru9I	TTAA	6 cut(s)	216, 279, 378, 461, 549, 587
TscAI	CASTG	3 cut(s)	340, 508, 743
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	3 cut(s)	340, 508, 743
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	671
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	6 cut(s)	172, 191, 275, 299, 490, 759
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.