Rorug01G0012600

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000499
Physical Location & Seq
Forward (+)
2067867 .. 2072639
4773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0012600.1

Sequence Viewer

Length: 738 bp
ATGAACGGGAATGGACAAATGGAGGTGCATTACATAGACACCGGCTTCCCTTACACGGCTACAGAAAGCTTTATGGACTTCTTTGAAGGTCTTACTCATGCCCCCGTGAACTATGGTCACGCCATGCCCGTGCATGATCAGGCATCTGCATACTGGTCAATGAATATGCACTCCTACAAATTTGGACTCTCTGGTCCGGGGAATACTTCTTATTATGGTGCTTATGAGGTAAATCCTCATTTTCCGAGAATGGATATGAGCAGGAGGGCTTGGGAATATCCTTTAATGACGAATTCAGAAGAGCCTGCTACCACTGCTTCGCAACCAGAAGAAACTGTAGTCGAGGAAGTTGATGTCATAACCGAAGAATCCATTCCAAATGAGCAAAACACAAATACTTCTCAGGTGGAATGGGAAGAGAACATCGATCCTGATAACATGACATATGAGGAATTACTCGATTTGGGTGAGGCTGTTGGTACTCAAAGCCGAGGGCTTTCCGACGAACTTATTAGCTTGCTTCCCACAACCAAATACAAGTGTGGAAGCTTTTTCTCAAGAAAGAAATCTGGAGAGAGATGTGTAATTTGCCAGGCGAGGTACAAAAGAGGAGCTCGACAAATGAAATTGCCCTGCAATCATTTTTACCATAGCGAATGCATCAGCAAATGGCTCGGCATCAACAAGATATGCCCAGTCTGCAACCTTGAGGTATTCGCCGAGGAATCAAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

245

Amino Acids

27.93

Weight (kDa)

4.92

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 186 - 235 5.1e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 193 - 235 4.4e-13 Ring finger domain
zf-C3HC4_2 PF13923 193 - 234 4.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 194 - 221 1.4e-06 RING-like zinc finger
zf-C3HC4 PF00097 194 - 234 3.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 192
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 2 cut(s) 179, 292
AfaI GTAC 2 cut(s) 481, 602
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 4 cut(s) 69, 516, 549, 614
AluI AGCT 4 cut(s) 69, 516, 549, 614
Alw21I GWGCWC 1 cut(s) 616
AlwI GGATC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 179, 292
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 616
BceAI ACGGC 1 cut(s) 72
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 1 cut(s) 593
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 60, 336
Bme1390I CCNGG 2 cut(s) 198, 593
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 198, 593
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 3 cut(s) 152, 669, 687
BmuI ACTGGG 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 2 cut(s) 541, 728
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 197, 490, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 158, 695
BseBI CCWGG 1 cut(s) 593
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 197, 490, 720
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 158, 695
BseRI GAGGAG 1 cut(s) 624
BshVI ATCGAT 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 2 cut(s) 42, 197
BslI CCNNNNNNNGG 1 cut(s) 55
BsmI GAATGC 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 2 cut(s) 136, 427
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 426
BspPI GGATC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 2 cut(s) 158, 695
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 197, 490, 720
BssMI GATC 2 cut(s) 136, 427
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 294, 411
BstC8I GCNNGC 2 cut(s) 306, 518
BstDEI CTNAG 1 cut(s) 402
BstKTI GATC 2 cut(s) 139, 430
BstMBI GATC 2 cut(s) 136, 427
BstMWI GCNNNNNNNGC 2 cut(s) 314, 699
BstNI CCWGG 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 196, 591
BstSFI CTRYAG 2 cut(s) 60, 336
Bsu15I ATCGAT 1 cut(s) 426
BsuTUI ATCGAT 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 306, 518
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 426
Csp6I GTAC 2 cut(s) 480, 601
CviAII CATG 4 cut(s) 98, 124, 134, 439
CviQI GTAC 2 cut(s) 480, 601
DdeI CTNAG 1 cut(s) 402
DpnI GATC 2 cut(s) 138, 429
DpnII GATC 2 cut(s) 136, 427
DrdI GACNNNNNNGTC 1 cut(s) 192
DseDI GACNNNNNNGTC 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 294, 411
EarI CTCTTC 2 cut(s) 294, 411
Ecl136II GAGCTC 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 591
EcoT22I ATGCAT 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 4 cut(s) 101, 127, 137, 442
FatI CATG 4 cut(s) 97, 123, 133, 438
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 591
HapII CCGG 2 cut(s) 42, 197
Hin1II CATG 4 cut(s) 101, 127, 137, 442
HindIII AAGCTT 2 cut(s) 67, 547
HinfI GANTC 3 cut(s) 186, 368, 725
HpaII CCGG 2 cut(s) 42, 197
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 246, 298, 502
Hpy188III TCNNGA 3 cut(s) 431, 558, 570
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 7 cut(s) 28, 133, 149, 169, 636, 660, 702
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 699
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 4 cut(s) 101, 127, 137, 442
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 427
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 611
LweI GCATC 3 cut(s) 152, 669, 687
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 138, 429
MboI GATC 2 cut(s) 136, 427
MboII GAAGA 4 cut(s) 311, 341, 377, 428
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 5 cut(s) 179, 292, 452, 585, 626
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 662
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 284, 736
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 42, 197
MspR9I CCNGG 2 cut(s) 198, 593
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 2 cut(s) 314, 699
NciI CCSGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 445
NdeII GATC 2 cut(s) 136, 427
NlaIII CATG 4 cut(s) 101, 127, 137, 442
NmeAIII GCCGAG 2 cut(s) 515, 654
NmuCI GTSAC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 368, 725
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 2 cut(s) 481, 602
RsaNI GTAC 2 cut(s) 480, 601
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 616
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 284, 736
Sau3AI GATC 2 cut(s) 136, 427
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 198, 593
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 152, 669, 687
SfcI CTRYAG 2 cut(s) 60, 336
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 556, 707
SmoI CTYRAG 2 cut(s) 556, 707
Sse9I AATT 5 cut(s) 179, 292, 452, 585, 626
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 2 cut(s) 196, 591
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 4 cut(s) 342, 426, 459, 616
TasI AATT 5 cut(s) 179, 292, 452, 585, 626
TfiI GAWTC 2 cut(s) 368, 725
Tru1I TTAA 2 cut(s) 284, 736
Tru9I TTAA 2 cut(s) 284, 736
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 17, 176, 638
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 2 cut(s) 179, 292
XmnI GAANNNNTTC 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.