Rmu_sc0006790.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006790.1
OG0000499
Physical Location & Seq
Forward (+)
78928 .. 81788
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006790.1_g000011.1.cds

Sequence Viewer

Length: 825 bp
atgctgcagctattgcagaagaaacagtggtggcctgacaaatctaaacttatggaacggacaaaagaaagagttgtagctgatctgagaagacatttggtccaaacatttgaatttgaaaaggaactcaacgatctgaacaatgccttgaaacgtgaggagaagtctgaaaccaatctaaaagatatttttgacacgatgcaagctgaggatgatgaatataggaaagctaaggaaaaacagctgacagaagtagagtgttcgttggatactgtagagaagagattgtcggtgtcgctagaaaatcgcgtagagatggagaagagactagaaaatcttaatgttttctgtgagggtgtgtattctactctcaaatcgaaggagtctagccgcgtctctcttgtcaaagaagctcagactcaggttactggcattggcaatctacctcgcatgtcgttggtctatgtgtcgctctacatggcatttcttgttctacttgtttttcgggttatatcatatttcgatgtcacagatggtaccttcattgatgcactttatattacttctgttacgctattcactgtgggttttggggatattgctcctaagtggagcggtactctacttttctgtgatatgttggataagttgatgccctctgttttcaaaggagatgctgatgcgtgctcggggcgagctcctatgttaggcgaccaaaaattgccccgccgttcaaaactagagcatgctactgcaaaacatacggaaaagtctttgggaggccgtttttgccgaaggcgagctctgatgctgcgggaggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.63

Weight (kDa)

8.17

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 615
AccII CGCG 2 cut(s) 309, 393
AciI CCGC 4 cut(s) 391, 615, 727, 814
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 2 cut(s) 538, 619
AfiI CCNNNNNNNGG 1 cut(s) 707
AgsI TTSAA 5 cut(s) 113, 119, 151, 667, 735
AhdI GACNNNNNGTC 1 cut(s) 98
AluBI AGCT 8 cut(s) 10, 80, 206, 230, 244, 413, 698, 803
AluI AGCT 8 cut(s) 10, 80, 206, 230, 244, 413, 698, 803
Alw21I GWGCWC 3 cut(s) 689, 700, 805
Alw26I GTCTC 2 cut(s) 319, 400
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 2 cut(s) 32, 781
ApeKI GCWGC 3 cut(s) 4, 7, 811
ApoI RAATTY 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 536
BanII GRGCYC 2 cut(s) 700, 805
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 3 cut(s) 689, 700, 805
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 19, 798
BccI CCATC 2 cut(s) 310, 527
BceAI ACGGC 2 cut(s) 714, 768
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 319, 400
BfaI CTAG 4 cut(s) 299, 329, 387, 740
BfmI CTRYAG 2 cut(s) 5, 273
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 4 cut(s) 5, 8, 391, 812
BlsI GCNGC 4 cut(s) 6, 9, 392, 813
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 538
BmsI GCATC 6 cut(s) 189, 538, 642, 664, 670, 798
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 604, 636
Bpu10I CCTNAGC 2 cut(s) 207, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMII CTCAG 4 cut(s) 77, 198, 428, 434
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 19, 798
Bsh1236I CGCG 2 cut(s) 309, 393
BshFI GGCC 2 cut(s) 34, 783
BshNI GGYRCC 1 cut(s) 536
BsiHKAI GWGCWC 3 cut(s) 689, 700, 805
BsiHKCI CYCGRG 1 cut(s) 688
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 2 cut(s) 319, 400
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 2 cut(s) 34, 783
BsoBI CYCGRG 1 cut(s) 688
Bsp1286I GDGCHC 3 cut(s) 689, 700, 805
Bsp143I GATC 2 cut(s) 82, 133
BspACI CCGC 4 cut(s) 391, 615, 727, 814
BspANI GGCC 2 cut(s) 34, 783
BspCNI CTCAG 4 cut(s) 78, 199, 427, 433
BspFNI CGCG 2 cut(s) 309, 393
BspLI GGNNCC 1 cut(s) 538
BspMAI CTGCAG 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 615
BsrI ACTGG 1 cut(s) 433
BssMI GATC 2 cut(s) 82, 133
Bst4CI ACNGT 3 cut(s) 27, 274, 583
Bst6I CTCTTC 2 cut(s) 275, 317
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 5 cut(s) 204, 685, 696, 747, 801
BstDEI CTNAG 6 cut(s) 86, 207, 231, 414, 420, 606
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 309, 393
BstKTI GATC 2 cut(s) 85, 136
BstMAI GTCTC 2 cut(s) 319, 400
BstMBI GATC 2 cut(s) 82, 133
BstMWI GCNNNNNNNGC 2 cut(s) 13, 789
BstNSI RCATGY 2 cut(s) 454, 749
BstSFI CTRYAG 2 cut(s) 5, 273
BstUI CGCG 2 cut(s) 309, 393
BstV1I GCAGC 2 cut(s) 19, 798
BstV2I GAAGAC 1 cut(s) 97
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 34, 783
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 32, 579
Cac8I GCNNGC 5 cut(s) 204, 685, 696, 747, 801
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 537, 618
CviAII CATG 3 cut(s) 451, 478, 746
CviQI GTAC 2 cut(s) 537, 618
DdeI CTNAG 6 cut(s) 86, 207, 231, 414, 420, 606
DpnI GATC 2 cut(s) 84, 135
DpnII GATC 2 cut(s) 82, 133
DriI GACNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 275, 317
Eam1105I GACNNNNNGTC 1 cut(s) 98
EarI CTCTTC 2 cut(s) 275, 317
Ecl136II GAGCTC 2 cut(s) 698, 803
Eco24I GRGCYC 2 cut(s) 700, 805
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 2 cut(s) 698, 803
Eco88I CYCGRG 1 cut(s) 688
EcoICRI GAGCTC 2 cut(s) 698, 803
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoT38I GRGCYC 2 cut(s) 700, 805
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 454, 481, 749
FatI CATG 3 cut(s) 450, 477, 745
FauI CCCGC 2 cut(s) 734, 807
Fnu4HI GCNGC 4 cut(s) 5, 8, 391, 812
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 2 cut(s) 700, 805
Fsp4HI GCNGC 4 cut(s) 5, 8, 391, 812
FspBI CTAG 4 cut(s) 299, 329, 387, 740
GluI GCNGC 4 cut(s) 5, 8, 391, 812
HaeIII GGCC 2 cut(s) 34, 783
HgaI GACGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 454, 481, 749
HinfI GANTC 2 cut(s) 383, 418
Hpy188I TCNGA 5 cut(s) 87, 138, 169, 417, 807
HpyAV CCTTC 3 cut(s) 373, 550, 789
HpyCH4III ACNGT 3 cut(s) 27, 274, 583
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 7, 16, 202, 551, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 789
HpyF3I CTNAG 6 cut(s) 86, 207, 231, 414, 420, 606
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 454, 481, 749
KpnI GGTACC 1 cut(s) 540
Kzo9I GATC 2 cut(s) 82, 133
LmnI GCTCC 3 cut(s) 607, 612, 703
LpnPI CCDG 3 cut(s) 48, 407, 414
Lsp1109I GCAGC 2 cut(s) 19, 798
LweI GCATC 6 cut(s) 189, 538, 642, 664, 670, 798
MaeI CTAG 4 cut(s) 299, 329, 387, 740
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 3 cut(s) 424, 526, 568
MalI GATC 2 cut(s) 84, 135
MbiI CCGCTC 1 cut(s) 615
MboI GATC 2 cut(s) 82, 133
MboII GAAGA 4 cut(s) 31, 102, 292, 334
MhlI GDGCHC 3 cut(s) 689, 700, 805
MluCI AATT 2 cut(s) 113, 719
MlyI GAGTC 2 cut(s) 392, 412
MmeI TCCRAC 2 cut(s) 246, 621
MnlI CCTC 7 cut(s) 151, 202, 346, 456, 667, 773, 811
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 244
MvnI CGCG 2 cut(s) 309, 393
MwoI GCNNNNNNNGC 2 cut(s) 13, 789
NdeII GATC 2 cut(s) 82, 133
NlaIII CATG 3 cut(s) 454, 481, 749
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 2 cut(s) 454, 749
PaeI GCATGC 1 cut(s) 749
PkrI GCNGC 4 cut(s) 6, 9, 392, 813
PleI GAGTC 2 cut(s) 391, 412
PpsI GAGTC 2 cut(s) 391, 412
Psp124BI GAGCTC 2 cut(s) 700, 805
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 2 cut(s) 538, 619
RsaNI GTAC 2 cut(s) 537, 618
SacI GAGCTC 2 cut(s) 700, 805
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 5, 8, 391, 812
Sau3AI GATC 2 cut(s) 82, 133
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 2 cut(s) 392, 412
SduI GDGCHC 3 cut(s) 689, 700, 805
SfaNI GCATC 6 cut(s) 189, 538, 642, 664, 670, 798
SfcI CTRYAG 2 cut(s) 5, 273
SinI GGWCC 1 cut(s) 100
SphI GCATGC 1 cut(s) 749
Sse9I AATT 2 cut(s) 113, 719
SsiI CCGC 4 cut(s) 391, 615, 727, 814
SspMI CTAG 4 cut(s) 299, 329, 387, 740
SstI GAGCTC 2 cut(s) 700, 805
TaaI ACNGT 3 cut(s) 27, 274, 583
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 377, 522
TasI AATT 2 cut(s) 113, 719
TauI GCSGC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 32, 586
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 3 cut(s) 4, 7, 811
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 231, 532
TspGWI ACGGA 2 cut(s) 73, 779
TspRI CASTG 2 cut(s) 32, 586
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 454, 749
XspI CTAG 4 cut(s) 299, 329, 387, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.