Rorug01G0011600

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
1927145 .. 1927991
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011600.1

Sequence Viewer

Length: 780 bp
ATGGCTTGTGGGTGTCCCAAAGAGGGTAAATCTCCGGCTCACGTTGCCACATACCTGGAGTCTTTTGGAAAGCTTTTCACAACACACAGCCCTCAGTTTCTTGGACTGAATCGTAACTCCGGCATATGGCCTGCTTCATCCTACGGTGAAGATGTGATCATAGGAGTTATTGATACAGGAATTTGGCCAGAGAGTGAGAGTTTCGGTGATAGGGGAATGTTAGAAGTCCCGAGAAGATGGAAAGGCACATGCGAGGATGGAACAGCATTTAGCTCATCTCTCTGCAACAAGAAGCTCATTGGTGCTCGATCATTCAGCAAAGGGCTCAAGGTAGCAGGGATAAAAATCTCCACAGAGTATGACTATAACTCAGCAAGAGACTTCTATGGTCATGGAACCCATAACTCATCAACAGCTGCAGGTAACCATGTACTTGGAGTAAGTCACTTTGGATATGCAAAAGGCAACGAAAGAGGGGTGGCGCCACGTGCACATGTTGCCATGTACAAGGTCCTCTGGGCAGAAGATACTGAGAAGAGTGCAGCTACTGATGTGCTTGCCGGCATGGACCAGGCGATTTCTGATGGAGTTGATATCATGTCAATCTCTCTAGGCTTTGATGTTTTTCCTTATTTCAACGACGTCATTGCCATCGGCTCCCTATCAGCAATTGAGAAAGGCATTGTTGTGGTCTGCGCTGCAGGGAACGATGGTCCTTTTTCCAAACACAACACACAATGGAGCGCCTTGGATCATGACAGTAGGAGCTGGCACACTTGA

Protein Analysis

259

Amino Acids

27.82

Weight (kDa)

6.04

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 49 - 244 3.9e-20 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
Acc36I ACCTGC 1 cut(s) 410
AccB1I GGYRCC 1 cut(s) 481
AclWI GGATC 1 cut(s) 759
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 180
AcvI CACGTG 1 cut(s) 488
AcyI GRCGYC 2 cut(s) 482, 642
AfaI GTAC 2 cut(s) 432, 506
AfiI CCNNNNNNNGG 2 cut(s) 23, 126
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 1 cut(s) 637
AjnI CCWGG 2 cut(s) 54, 570
AluBI AGCT 6 cut(s) 73, 273, 295, 416, 545, 768
AluI AGCT 6 cut(s) 73, 273, 295, 416, 545, 768
Alw21I GWGCWC 2 cut(s) 307, 493
Alw26I GTCTC 1 cut(s) 372
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 1 cut(s) 759
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 2 cut(s) 128, 185
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 3 cut(s) 416, 542, 698
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 3 cut(s) 484, 698, 746
AspS9I GGNCC 3 cut(s) 511, 568, 713
AsuHPI GGTGA 2 cut(s) 158, 218
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 3 cut(s) 511, 568, 713
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 307, 493
BbvI GCAGC 3 cut(s) 403, 554, 685
BccI CCATC 5 cut(s) 231, 251, 578, 659, 704
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BciT130I CCWGG 2 cut(s) 56, 572
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 2 cut(s) 417, 699
BfoI RGCGCY 2 cut(s) 485, 747
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 3 cut(s) 417, 543, 699
BlsI GCNGC 3 cut(s) 418, 544, 700
Bme1390I CCNGG 2 cut(s) 56, 572
Bme18I GGWCC 3 cut(s) 511, 568, 713
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 511, 568, 713
BmiI GGNNCC 3 cut(s) 397, 483, 658
BmrFI CCNGG 2 cut(s) 56, 572
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 482, 642
BsaJI CCNNGG 1 cut(s) 747
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 126
Bse118I RCCGGY 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 2 cut(s) 56, 572
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 2 cut(s) 137, 262
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 23, 126
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 107, 384, 522
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 3 cut(s) 403, 554, 685
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 2 cut(s) 130, 187
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 307, 493
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 3 cut(s) 35, 120, 561
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 23, 126
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 130, 187
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 307, 327, 493
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 3 cut(s) 156, 308, 751
BspANI GGCC 2 cut(s) 130, 187
BspCNI CTCAG 3 cut(s) 106, 383, 523
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 397, 483, 658
BspMAI CTGCAG 2 cut(s) 421, 703
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 504
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 3 cut(s) 156, 308, 751
BssNI GRCGYC 2 cut(s) 482, 642
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 56, 572
Bst4CI ACNGT 2 cut(s) 146, 761
Bst6I CTCTTC 1 cut(s) 530
BstACI GRCGYC 2 cut(s) 482, 642
BstAPI GCANNNNNTGC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 4 cut(s) 132, 558, 562, 770
BstDEI CTNAG 3 cut(s) 93, 370, 531
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 2 cut(s) 137, 262
BstH2I RGCGCY 2 cut(s) 485, 747
BstHHI GCGC 3 cut(s) 484, 698, 746
BstKTI GATC 3 cut(s) 159, 311, 754
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 156, 308, 751
BstMWI GCNNNNNNNGC 3 cut(s) 44, 488, 497
BstNI CCWGG 2 cut(s) 56, 572
BstNSI RCATGY 2 cut(s) 252, 497
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 54, 570
BstSFI CTRYAG 2 cut(s) 417, 699
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 403, 554, 685
BstXI CCANNNNNNTGG 2 cut(s) 55, 434
BsuRI GGCC 2 cut(s) 130, 187
BtsCI GGATG 2 cut(s) 137, 262
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 4 cut(s) 132, 558, 562, 770
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 1 cut(s) 754
CfoI GCGC 3 cut(s) 484, 698, 746
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 3 cut(s) 511, 568, 713
Csp6I GTAC 2 cut(s) 431, 505
CviAII CATG 8 cut(s) 249, 392, 428, 494, 502, 565, 598, 755
CviQI GTAC 2 cut(s) 431, 505
DdeI CTNAG 3 cut(s) 93, 370, 531
DinI GGCGCC 1 cut(s) 483
DpnI GATC 3 cut(s) 158, 310, 753
DpnII GATC 3 cut(s) 156, 308, 751
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 3 cut(s) 511, 568, 713
Eco72I CACGTG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 511
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 54, 570
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 327
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 8 cut(s) 252, 395, 431, 497, 505, 568, 601, 758
FaqI GGGAC 1 cut(s) 212
FatI CATG 8 cut(s) 248, 391, 427, 493, 501, 564, 597, 754
FauNDI CATATG 1 cut(s) 125
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 417, 543, 699
FokI GGATG 2 cut(s) 124, 269
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 3 cut(s) 417, 543, 699
FspBI CTAG 1 cut(s) 611
GlaI GCGC 3 cut(s) 483, 697, 745
GluI GCNGC 3 cut(s) 417, 543, 699
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 2 cut(s) 485, 747
HaeIII GGCC 2 cut(s) 130, 187
HapII CCGG 3 cut(s) 35, 120, 561
HhaI GCGC 3 cut(s) 484, 698, 746
Hin1I GRCGYC 2 cut(s) 482, 642
Hin1II CATG 8 cut(s) 252, 395, 431, 497, 505, 568, 601, 758
Hin6I GCGC 3 cut(s) 482, 696, 744
HinP1I GCGC 3 cut(s) 482, 696, 744
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 59, 109
HpaII CCGG 3 cut(s) 35, 120, 561
HphI GGTGA 2 cut(s) 158, 218
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 2 cut(s) 229, 755
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 146, 761
HpyCH4IV ACGT 3 cut(s) 42, 487, 642
HpyCH4V TGCA 6 cut(s) 285, 419, 458, 491, 542, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 488, 497
HpyF3I CTNAG 3 cut(s) 93, 370, 531
HpySE526I ACGT 3 cut(s) 42, 487, 642
Hsp92I GRCGYC 2 cut(s) 482, 642
Hsp92II CATG 8 cut(s) 252, 395, 431, 497, 505, 568, 601, 758
HspAI GCGC 3 cut(s) 482, 696, 744
KasI GGCGCC 1 cut(s) 481
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 3 cut(s) 156, 308, 751
LmnI GCTCC 3 cut(s) 662, 741, 765
Lsp1109I GCAGC 3 cut(s) 403, 554, 685
MaeI CTAG 1 cut(s) 611
MaeII ACGT 3 cut(s) 42, 487, 642
MaeIII GTNAC 3 cut(s) 113, 422, 443
MalI GATC 3 cut(s) 158, 310, 753
MboI GATC 3 cut(s) 156, 308, 751
MboII GAAGA 4 cut(s) 161, 246, 536, 547
MfeI CAATTG 1 cut(s) 669
MhlI GDGCHC 3 cut(s) 307, 327, 493
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 2 cut(s) 180, 669
MluNI TGGCCA 1 cut(s) 187
Mly113I GGCGCC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 16, 102, 247, 467, 524
Mox20I TGGCCA 1 cut(s) 187
MroNI GCCGGC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 3 cut(s) 35, 120, 561
MspR9I CCNGG 2 cut(s) 56, 572
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 2 cut(s) 56, 572
MwoI GCNNNNNNNGC 3 cut(s) 44, 488, 497
NaeI GCCGGC 1 cut(s) 562
NarI GGCGCC 1 cut(s) 482
NdeI CATATG 1 cut(s) 125
NdeII GATC 3 cut(s) 156, 308, 751
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 8 cut(s) 252, 395, 431, 497, 505, 568, 601, 758
NlaIV GGNNCC 3 cut(s) 397, 483, 658
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 2 cut(s) 252, 497
PagI TCATGA 1 cut(s) 754
PciI ACATGT 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 562
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 418, 544, 700
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 485
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 511
PscI ACATGT 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 54, 570
PspCI CACGTG 1 cut(s) 488
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 54, 570
PspN4I GGNNCC 3 cut(s) 397, 483, 658
PspPI GGNCC 3 cut(s) 511, 568, 713
PspPPI RGGWCCY 1 cut(s) 511
PstI CTGCAG 2 cut(s) 421, 703
PstNI CAGNNNCTG 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 432, 506
RsaNI GTAC 2 cut(s) 431, 505
RseI CAYNNNNRTG 1 cut(s) 686
SatI GCNGC 3 cut(s) 417, 543, 699
Sau3AI GATC 3 cut(s) 156, 308, 751
Sau96I GGNCC 3 cut(s) 511, 568, 713
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 56, 572
SduI GDGCHC 3 cut(s) 307, 327, 493
SfcI CTRYAG 2 cut(s) 417, 699
SfoI GGCGCC 1 cut(s) 483
SinI GGWCC 3 cut(s) 511, 568, 713
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 180, 669
SspDI GGCGCC 1 cut(s) 481
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 54, 570
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 2 cut(s) 146, 761
TaiI ACGT 3 cut(s) 45, 490, 645
TaqI TCGA 1 cut(s) 307
TasI AATT 2 cut(s) 180, 669
TatI WGTACW 2 cut(s) 430, 504
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 416, 542, 698
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 126
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 3 cut(s) 511, 568, 713
XapI RAATTY 1 cut(s) 180
XceI RCATGY 2 cut(s) 252, 497
XspI CTAG 1 cut(s) 611
ZraI GACGTC 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.