RLG00000030651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000499
Physical Location & Seq
Forward (+)
65097957 .. 65099029
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030651

Sequence Viewer

Length: 624 bp
ATGCGGTTTCGATTGAAATTTGGATCGAATCCAGGGTTGAACATCTATTTCAGCTTCGGACTCTCAATTAGGGGCAGGATGTCAAGCAGGGGCAAGGTTTCGAATCTTAAAGAAAAGATTATTAAATGCCAAGACGAAACGCTGCAGCTATTGCAGGAGAAACAGATGTGGTCTGAAAAATCCAAAATTATGGAACAGACAGAAGCTGACCTGAGAAGAGAAAAACTATGCAATTCGATCCAACCATCTAAATTTGAAAAGGAACTTGAGGATCTGAAAAAGGCCTTGAAGAATGAGGAGGAGAATGAATCTGCAATAAAAGAGATTTTTGACCGTAGGCAAGTTAGCTATGCTGAATATAAGAAATCTATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGGGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTTAAAAATCTTGATGTCTTCTGTGGGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGGTGGACAGAATGGACAGAAAACACGAAAAAGGCGAGGTTCGAAGAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

24.03

Weight (kDa)

9.58

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 3 cut(s) 31, 232, 279
AcsI RAATTY 2 cut(s) 17, 251
AgsI TTSAA 4 cut(s) 16, 40, 257, 289
AjnI CCWGG 2 cut(s) 31, 565
AluBI AGCT 8 cut(s) 54, 148, 206, 348, 382, 412, 551, 556
AluI AGCT 8 cut(s) 54, 148, 206, 348, 382, 412, 551, 556
Alw26I GTCTC 2 cut(s) 457, 538
AlwI GGATC 3 cut(s) 31, 232, 279
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 142, 145
ApoI RAATTY 2 cut(s) 17, 251
AsuII TTCGAA 2 cut(s) 101, 608
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 129, 157
BccI CCATC 2 cut(s) 253, 448
BciT130I CCWGG 2 cut(s) 33, 567
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 457, 538
BfaI CTAG 2 cut(s) 413, 525
BfmI CTRYAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 143, 146
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 2 cut(s) 144, 147
Bme1390I CCNGG 2 cut(s) 33, 567
BmrFI CCNGG 2 cut(s) 33, 567
BpiI GAAGAC 1 cut(s) 475
Bpu1102I GCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 2 cut(s) 101, 608
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 32
BseBI CCWGG 2 cut(s) 33, 567
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 84, 562
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 311, 314
BseXI GCAGC 2 cut(s) 129, 157
BshFI GGCC 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 457, 538
BsnI GGCC 1 cut(s) 284
Bsp119I TTCGAA 2 cut(s) 101, 608
Bsp143I GATC 4 cut(s) 23, 237, 271, 559
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 3 cut(s) 31, 232, 279
BspT104I TTCGAA 2 cut(s) 101, 608
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 4 cut(s) 23, 237, 271, 559
Bst2UI CCWGG 2 cut(s) 33, 567
Bst4CI ACNGT 2 cut(s) 335, 435
Bst6I CTCTTC 2 cut(s) 211, 455
BstAPI GCANNNNNTGC 1 cut(s) 151
BstBI TTCGAA 2 cut(s) 101, 608
BstDEI CTNAG 4 cut(s) 212, 403, 552, 618
BstF5I GGATG 2 cut(s) 84, 562
BstKTI GATC 4 cut(s) 26, 240, 274, 562
BstMAI GTCTC 2 cut(s) 457, 538
BstMBI GATC 4 cut(s) 23, 237, 271, 559
BstMWI GCNNNNNNNGC 2 cut(s) 151, 444
BstNI CCWGG 2 cut(s) 33, 567
BstSCI CCNGG 2 cut(s) 31, 565
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 129, 157
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 84, 562
CaiI CAGNNNCTG 1 cut(s) 206
CseI GACGC 1 cut(s) 453
DdeI CTNAG 4 cut(s) 212, 403, 552, 618
DpnI GATC 4 cut(s) 25, 239, 273, 561
DpnII GATC 4 cut(s) 23, 237, 271, 559
Eam1104I CTCTTC 2 cut(s) 211, 455
EarI CTCTTC 2 cut(s) 211, 455
Eco147I AGGCCT 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 31, 565
FaiI YATR 7 cut(s) 191, 229, 351, 360, 371, 449, 497
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 143, 146
FokI GGATG 2 cut(s) 91, 549
Fsp4HI GCNGC 2 cut(s) 143, 146
FspBI CTAG 2 cut(s) 413, 525
GluI GCNGC 2 cut(s) 143, 146
HaeIII GGCC 1 cut(s) 284
HgaI GACGC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 7 cut(s) 28, 60, 103, 308, 423, 512, 521
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 3 cut(s) 59, 175, 276
Hpy188III TCNNGA 3 cut(s) 420, 476, 509
Hpy8I GTNNAC 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 511, 548
HpyCH4III ACNGT 2 cut(s) 335, 435
HpyCH4V TGCA 5 cut(s) 145, 154, 231, 314, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 444
HpyF3I CTNAG 4 cut(s) 212, 403, 552, 618
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 23, 237, 271, 559
LpnPI CCDG 9 cut(s) 18, 45, 61, 73, 140, 224, 405, 552, 579
Lsp1109I GCAGC 2 cut(s) 129, 157
MaeI CTAG 2 cut(s) 413, 525
MalI GATC 4 cut(s) 25, 239, 273, 561
MboI GATC 4 cut(s) 23, 237, 271, 559
MboII GAAGA 5 cut(s) 228, 301, 472, 475, 622
MflI RGATCY 1 cut(s) 271
MluCI AATT 6 cut(s) 17, 66, 186, 232, 251, 390
MlyI GAGTC 3 cut(s) 54, 432, 530
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 4 cut(s) 262, 289, 292, 596
MseI TTAA 3 cut(s) 108, 123, 468
MslI CAYNNNNRTG 2 cut(s) 452, 567
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 33, 567
MvaI CCWGG 2 cut(s) 33, 567
MwoI GCNNNNNNNGC 2 cut(s) 151, 444
NdeII GATC 4 cut(s) 23, 237, 271, 559
NspV TTCGAA 2 cut(s) 101, 608
PceI AGGCCT 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PfeI GAWTC 4 cut(s) 28, 103, 308, 512
PkrI GCNGC 2 cut(s) 144, 147
PleI GAGTC 3 cut(s) 54, 431, 529
PpsI GAGTC 3 cut(s) 54, 431, 529
Psp6I CCWGG 2 cut(s) 31, 565
PspGI CCWGG 2 cut(s) 31, 565
PstI CTGCAG 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 452, 567
SaqAI TTAA 3 cut(s) 108, 123, 468
SatI GCNGC 2 cut(s) 143, 146
Sau3AI GATC 4 cut(s) 23, 237, 271, 559
SchI GAGTC 3 cut(s) 54, 432, 530
ScrFI CCNGG 2 cut(s) 33, 567
SfcI CTRYAG 1 cut(s) 143
SfuI TTCGAA 2 cut(s) 101, 608
SmiMI CAYNNNNRTG 2 cut(s) 452, 567
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 6 cut(s) 17, 66, 186, 232, 251, 390
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 413, 525
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 31, 565
TaaI ACNGT 2 cut(s) 335, 435
TaqI TCGA 7 cut(s) 10, 26, 101, 236, 510, 515, 608
TasI AATT 6 cut(s) 17, 66, 186, 232, 251, 390
TfiI GAWTC 4 cut(s) 28, 103, 308, 512
Tru1I TTAA 3 cut(s) 108, 123, 468
Tru9I TTAA 3 cut(s) 108, 123, 468
TseI GCWGC 2 cut(s) 142, 145
TspDTI ATGAA 2 cut(s) 321, 444
XapI RAATTY 2 cut(s) 17, 251
XspI CTAG 2 cut(s) 413, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.