FvH4_7g01240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000499
Physical Location & Seq
Reverse (-)
1642793 .. 1647272
4480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01240.t1

Sequence Viewer

Length: 570 bp
ATGTCAGGCCAGAACGAAGAGGTTTCGAAGCTTAAAAACGAGATAATTAAATGCCAAGAGGAGACGCTGCAGCTATTCCACGAGAAGCAGCGGTGGCCGGACAAATGTTATGTTCTGGAACAGACAAAACAAAAAGCCGTAGCTGACCTCAGAAAACAACTATCAAGTAAATCCACCCAAACATCTCATCTCGAGGATCTCAACTCGGCCTTGAAGGCTGAGGACAAGTTGCACACTCTGCTAAATGGGACTTTAACAGATATCCAAATTGAGTATGATGAATATAAGAAATCCAACGCAATGCACCTGATAGATGTAGCGCAGCGGTTGGATGAGGCAAAGAAGAGGTTGTCTGATCAAGAGTCAGAAATCAATAGGCTGTGCAAAAGTCGCGTAATGATGGAGAAGACACTAGAAAATCTTAATGCTTTCTGTGAGGCTGTGTATTCTACTCTCGAACCAAAGGAGTCTAGTGGTGTCTCTTTCGTCAAGGAAGATAAGCTTGATCACCCTGGTGGACAAGATGGACAGAAGCCGCAAAAAAGGCTAGATCCGAAGAAGTCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.76

Weight (kDa)

6.54

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 393
AciI CCGC 3 cut(s) 91, 325, 536
AclWI GGATC 2 cut(s) 204, 545
AcoI YGGCCR 1 cut(s) 95
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 513
AluBI AGCT 4 cut(s) 31, 73, 143, 502
AluI AGCT 4 cut(s) 31, 73, 143, 502
Alw26I GTCTC 2 cut(s) 56, 484
AlwI GGATC 2 cut(s) 204, 545
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 7, 95, 207
ApeKI GCWGC 4 cut(s) 67, 70, 88, 322
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 191
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 4 cut(s) 54, 82, 100, 334
BccI CCATC 2 cut(s) 394, 518
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 2 cut(s) 355, 505
BcoDI GTCTC 2 cut(s) 56, 484
BfaI CTAG 3 cut(s) 413, 471, 548
BfmI CTRYAG 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 5 cut(s) 68, 71, 89, 323, 536
BlsI GCNGC 5 cut(s) 69, 72, 90, 324, 537
Bme1390I CCNGG 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 413
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 163, 210
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 4 cut(s) 54, 82, 100, 334
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 3 cut(s) 9, 97, 209
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 56, 484
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 3 cut(s) 9, 97, 209
BsoBI CYCGRG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 4 cut(s) 196, 355, 505, 550
BspACI CCGC 3 cut(s) 91, 325, 536
BspANI GGCC 3 cut(s) 9, 97, 209
BspCNI CTCAG 2 cut(s) 162, 211
BspFNI CGCG 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 2 cut(s) 204, 545
BspT104I TTCGAA 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 4 cut(s) 196, 355, 505, 550
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 12, 338
BstAPI GCANNNNNTGC 1 cut(s) 238
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 149, 219
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 199, 358, 508, 553
BstMAI GTCTC 2 cut(s) 56, 484
BstMBI GATC 4 cut(s) 196, 355, 505, 550
BstMWI GCNNNNNNNGC 5 cut(s) 94, 215, 238, 390, 544
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 54, 82, 100, 334
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 2 cut(s) 196, 550
BstYI RGATCY 2 cut(s) 196, 550
BsuRI GGCC 3 cut(s) 9, 97, 209
BtsCI GGATG 1 cut(s) 337
CfoI GCGC 1 cut(s) 322
CseI GACGC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 149, 219
DpnI GATC 4 cut(s) 198, 357, 507, 552
DpnII GATC 4 cut(s) 196, 355, 505, 550
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 12, 338
EarI CTCTTC 2 cut(s) 12, 338
Eco32I GATATC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 511
EcoRV GATATC 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 3 cut(s) 111, 276, 285
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 262
FbaI TGATCA 2 cut(s) 355, 505
Fnu4HI GCNGC 5 cut(s) 68, 71, 89, 323, 536
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 5 cut(s) 68, 71, 89, 323, 536
FspBI CTAG 3 cut(s) 413, 471, 548
GlaI GCGC 1 cut(s) 321
GluI GCNGC 5 cut(s) 68, 71, 89, 323, 536
HaeIII GGCC 3 cut(s) 9, 97, 209
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 322
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 2 cut(s) 29, 500
HinfI GANTC 2 cut(s) 362, 467
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 4 cut(s) 152, 355, 367, 555
Hpy188III TCNNGA 5 cut(s) 116, 191, 359, 455, 564
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 70, 232, 304, 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 215, 238, 390, 544
HpyF3I CTNAG 2 cut(s) 149, 219
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 2 cut(s) 355, 505
Kzo9I GATC 4 cut(s) 196, 355, 505, 550
LpnPI CCDG 6 cut(s) 23, 101, 111, 320, 498, 525
Lsp1109I GCAGC 4 cut(s) 54, 82, 100, 334
MaeI CTAG 3 cut(s) 413, 471, 548
MalI GATC 4 cut(s) 198, 357, 507, 552
MboI GATC 4 cut(s) 196, 355, 505, 550
MboII GAAGA 5 cut(s) 29, 355, 418, 506, 568
MflI RGATCY 2 cut(s) 196, 550
MluCI AATT 2 cut(s) 45, 267
MlyI GAGTC 2 cut(s) 371, 476
MmeI TCCRAC 2 cut(s) 309, 318
MnlI CCTC 8 cut(s) 13, 52, 158, 187, 214, 328, 339, 430
MseI TTAA 4 cut(s) 33, 48, 254, 423
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 91, 325
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 94, 215, 238, 390, 544
NdeII GATC 4 cut(s) 196, 355, 505, 550
NmeAIII GCCGAG 1 cut(s) 185
NspV TTCGAA 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 191
PkrI GCNGC 5 cut(s) 69, 72, 90, 324, 537
PleI GAGTC 2 cut(s) 370, 475
PpsI GAGTC 2 cut(s) 370, 475
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 2 cut(s) 196, 550
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 4 cut(s) 33, 48, 254, 423
SatI GCNGC 5 cut(s) 68, 71, 89, 323, 536
Sau3AI GATC 4 cut(s) 196, 355, 505, 550
SchI GAGTC 2 cut(s) 371, 476
ScrFI CCNGG 1 cut(s) 513
SetI ASST 8 cut(s) 24, 33, 75, 145, 150, 309, 350, 504
SfcI CTRYAG 1 cut(s) 68
Sfr274I CTCGAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 45, 267
SsiI CCGC 3 cut(s) 91, 325, 536
SspMI CTAG 3 cut(s) 413, 471, 548
StyD4I CCNGG 1 cut(s) 511
TaqI TCGA 4 cut(s) 26, 192, 456, 565
TasI AATT 2 cut(s) 45, 267
TauI GCSGC 1 cut(s) 538
Tru1I TTAA 4 cut(s) 33, 48, 254, 423
Tru9I TTAA 4 cut(s) 33, 48, 254, 423
TseI GCWGC 4 cut(s) 67, 70, 88, 322
TspDTI ATGAA 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 191
XspI CTAG 3 cut(s) 413, 471, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.