Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000499

Physical Location & Seq

Genomic Coordinates Reverse (-)

520498 .. 521668

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAAGAAGAGAACCTTCTCAATGAGAACCTTCTCCATCCCAACGAGTCCTCACCGGAAGAAACTCAAGTCACCACCGTATCAAAATCGAAATGGACCATTCTTGTACTAGCCATGATCCTCCTCTTGGTCTACTTAACCTTCGGGGTTTGCACATACTCATTCTTTCGAGACCAATTCTCCGGAACCGAGACCAATCTTTTCGTCGACGCTTTCTATTTCTCCATCGTCACATTCTCTACAGTCGGTTACGGGGACATTGTCCCGTCAACTTCAACGACCAAGATCTTGACCATCGTCTTGGTATCAACCGGCGTCGTATTTCTTGATTATCTACTCAACCGCGTCGTGAGTCACGTTCTAAGTCTTCAAGAAAACGCGATTCTTGATCGAATCAACAAGACAAGAAACAGAGCGATTAGAGATCACATTGCCGAAGATGGCAAGATAAGGTTAAAGTGGAAACTTTGTTTAGCGTTTTGCGCCGTTGGTCTCTGCGTCGGAAGTGGAGCTTTGTTTCTTCACGTTTTCGAGAGATTGGATTGGTTGGATTCGGTTTACTTGTCGGTTATCTCCGTTACGACGGTTGGTTACGGAGATAAAACGTTTAAGACGGTTGAAGGGAGAGGCTTCGCAGTGTTTTGGCTTCTTCTTTCAACTATTGCAATGGCTACTCTGTTTCTTTACTTGGCTGAGATGAGAATCGATCGTACTACTGTCATGAAATTGCCCCCGAGTGAATCAGAGTTTATTGTGTTCAAGCTTAGAGAAAGTGGGAGGATTAGTGAGGATGATATAAAGCAGATCGTAAGAGAGTTCGAGAATCTTGAAGAAGTGCCATCAAGCGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

284

Amino Acids

32.06

Weight (kDa)

5.14

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	23 - 113	1.2e-08	Ion transport protein
Ion_trans_2	PF07885	40 - 118	2.9e-16	Ion channel
Ion_trans_2	PF07885	168 - 233	4.9e-13	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02510
fragaria_vesca	FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica	MD05G1161500.v1.1
pyrus_communis	pycom05g15160
rosa_chinensis	RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata	RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora	Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa	Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha	Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana	Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	132, 207
AccII	CGCG	2 cut(s)	345, 380
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	2 cut(s)	343, 846
AclI	AACGTT	1 cut(s)	605
AclWI	GGATC	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	108, 712
AfiI	CCNNNNNNNGG	2 cut(s)	127, 845
AgsI	TTSAA	6 cut(s)	276, 371, 620, 657, 760, 830
AluBI	AGCT	2 cut(s)	512, 763
AluI	AGCT	2 cut(s)	512, 763
Alw26I	GTCTC	3 cut(s)	165, 185, 497
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	733
Aor13HI	TCCGGA	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	45, 64
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BbsI	GAAGAC	1 cut(s)	359
BccI	CCATC	5 cut(s)	45, 233, 302, 434, 847
BceAI	ACGGC	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	165, 185, 497
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	240
BglII	AGATCT	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	187
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	705
BsaBI	GATNNNNATC	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	315
BsaI	GGTCTC	3 cut(s)	165, 185, 497
BsaWI	WCCGGW	2 cut(s)	55, 182
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 769, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 845
Bse118I	RCCGGY	1 cut(s)	311
Bse3DI	GCAATG	2 cut(s)	429, 672
Bse8I	GATNNNNATC	1 cut(s)	701
BseAI	TCCGGA	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	705
BseGI	GGATG	2 cut(s)	37, 796
BseJI	GATNNNNATC	1 cut(s)	701
BseLI	CCNNNNNNNGG	2 cut(s)	127, 845
BseMI	GCAATG	2 cut(s)	429, 672
BseMII	CTCAG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	345, 380
Bsh1285I	CGRYCG	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	56, 183, 312
BslFI	GGGAC	2 cut(s)	248, 269
BslI	CCNNNNNNNGG	2 cut(s)	127, 845
BsmAI	GTCTC	3 cut(s)	165, 185, 497
BsmFI	GGGAC	2 cut(s)	248, 269
Bso31I	GGTCTC	3 cut(s)	165, 185, 497
BsoBI	CYCGRG	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
BspACI	CCGC	2 cut(s)	343, 846
BspCNI	CTCAG	1 cut(s)	685
BspDI	ATCGAT	1 cut(s)	705
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	345, 380
BspHI	TCATGA	2 cut(s)	720, 851
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	112
BspTNI	GGTCTC	3 cut(s)	165, 185, 497
BsrDI	GCAATG	2 cut(s)	429, 672
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
BssNI	GRCGYC	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	79, 244, 586, 616, 718
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	362, 693, 764
BstF5I	GGATG	2 cut(s)	37, 796
BstFNI	CGCG	2 cut(s)	345, 380
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	7 cut(s)	120, 288, 391, 427, 709, 807, 851
BstMAI	GTCTC	3 cut(s)	165, 185, 497
BstMBI	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
BstMCI	CGRYCG	1 cut(s)	709
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	345, 380
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	37, 796
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
CciI	TCATGA	2 cut(s)	720, 851
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	705
CseI	GACGC	4 cut(s)	218, 304, 334, 487
Csp6I	GTAC	2 cut(s)	107, 711
CviAII	CATG	3 cut(s)	115, 721, 852
CviJI	RGCY	7 cut(s)	113, 512, 630, 646, 671, 692, 763
CviKI_1	RGCY	7 cut(s)	113, 512, 630, 646, 671, 692, 763
CviQI	GTAC	2 cut(s)	107, 711
DdeI	CTNAG	3 cut(s)	362, 693, 764
DpnI	GATC	7 cut(s)	119, 287, 390, 426, 708, 806, 850
DpnII	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco31I	GGTCTC	3 cut(s)	165, 185, 497
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	733
FaeI	CATG	3 cut(s)	118, 724, 855
FaiI	YATR	5 cut(s)	116, 157, 722, 797, 853
FalI	AAGNNNNNCTT	3 cut(s)	32, 496, 528
FaqI	GGGAC	2 cut(s)	248, 269
FatI	CATG	3 cut(s)	114, 720, 851
FblI	GTMKAC	2 cut(s)	132, 207
FokI	GGATG	2 cut(s)	24, 803
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	484
HapII	CCGG	3 cut(s)	56, 183, 312
HgaI	GACGC	4 cut(s)	218, 304, 334, 487
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	118, 724, 855
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	208, 270
HindII	GTYRAC	2 cut(s)	208, 270
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	8 cut(s)	47, 352, 382, 393, 551, 702, 740, 823
HpaII	CCGG	3 cut(s)	56, 183, 312
HphI	GGTGA	2 cut(s)	45, 64
Hpy166II	GTNNAC	4 cut(s)	133, 208, 270, 559
Hpy188I	TCNGA	2 cut(s)	503, 745
Hpy8I	GTNNAC	4 cut(s)	133, 208, 270, 559
Hpy99I	CGWCG	6 cut(s)	209, 212, 320, 350, 503, 586
HpyAV	CCTTC	4 cut(s)	26, 41, 151, 614
HpyCH4III	ACNGT	5 cut(s)	79, 244, 586, 616, 718
HpyCH4IV	ACGT	3 cut(s)	357, 525, 605
HpyCH4V	TGCA	2 cut(s)	153, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	3 cut(s)	362, 693, 764
HpySE526I	ACGT	3 cut(s)	357, 525, 605
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	118, 724, 855
HspAI	GCGC	1 cut(s)	483
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	3 cut(s)	69, 196, 325
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	3 cut(s)	357, 525, 605
MaeIII	GTNAC	6 cut(s)	70, 229, 248, 353, 577, 590
MalI	GATC	7 cut(s)	119, 287, 390, 426, 708, 806, 850
MboI	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
MboII	GAAGA	8 cut(s)	17, 20, 71, 359, 449, 512, 641, 842
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	2 cut(s)	176, 725
MlyI	GAGTC	2 cut(s)	56, 361
MmeI	TCCRAC	2 cut(s)	481, 528
MnlI	CCTC	6 cut(s)	61, 131, 134, 620, 771, 781
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	3 cut(s)	137, 455, 609
MspI	CCGG	3 cut(s)	56, 183, 312
MvnI	CGCG	2 cut(s)	345, 380
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
NlaIII	CATG	3 cut(s)	118, 724, 855
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	70, 229, 353
PagI	TCATGA	2 cut(s)	720, 851
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	6 cut(s)	382, 393, 551, 702, 740, 823
PflFI	GACNNNGTC	1 cut(s)	260
Ple19I	CGATCG	1 cut(s)	709
PleI	GAGTC	2 cut(s)	55, 360
PpsI	GAGTC	2 cut(s)	55, 360
PshAI	GACNNNNGTC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	108, 712
RsaNI	GTAC	2 cut(s)	107, 711
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	137, 455, 609
Sau3AI	GATC	7 cut(s)	117, 285, 388, 424, 706, 804, 848
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	2 cut(s)	56, 361
SetI	ASST	9 cut(s)	18, 33, 143, 360, 455, 514, 528, 608, 765
SfcI	CTRYAG	1 cut(s)	240
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	176, 725
SsiI	CCGC	2 cut(s)	343, 846
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	5 cut(s)	79, 244, 586, 616, 718
TaiI	ACGT	3 cut(s)	360, 528, 608
TaqI	TCGA	7 cut(s)	89, 169, 207, 391, 531, 705, 819
TasI	AATT	2 cut(s)	176, 725
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	6 cut(s)	382, 393, 551, 702, 740, 823
Tru1I	TTAA	3 cut(s)	137, 455, 609
Tru9I	TTAA	3 cut(s)	137, 455, 609
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	3 cut(s)	70, 229, 353
Tsp45I	GTSAC	3 cut(s)	70, 229, 353
TspDTI	ATGAA	1 cut(s)	737
TspGWI	ACGGA	2 cut(s)	565, 609
TspRI	CASTG	1 cut(s)	642
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	96
XmiI	GTMKAC	2 cut(s)	132, 207
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.