Rorug01G0012400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000499
Physical Location & Seq
Forward (+)
2028874 .. 2029860
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0012400.1

Sequence Viewer

Length: 987 bp
ATGACTTGGGCTACTGATTTTATGAGGGAACTCTTTACGGAAGGTGAAGTGGAGAGGATGGCTTCTATCCCTCTTAGTATTCGTGGCGTCGAGGACTGCTTGGTTTGGCACTATGACAAGAAAGGATTTTATCAGGTTCGAAGTGGTTACCACGTGTATAACACAGCAATGAGTAATAAAGATTGTGCATCAACTTCATCTGGGGAAGATGGTGGTGTTAGTAGTAAGTACTGGAGCAAGGTCTGGGGTGCACAAATTCATCCCAAAGCTAAGTCTTTTGTATGGAGACTTTTGAAGAATATTCTACCTACAAAAGCAGCCCTATTGCAACGTAGAGTTGCTTTGGTCAACCATAATTGCATGTTTTGCATGGGAGCGACAGAAACAGGTACACATTTATTCAAATCTTGTCATGCTTTGCATTGTTTTTGGTTGTTTGGACCACTTAGATTGCATGTGAGTGCGCACCCAGCCAAGAGTGTTCGTGATTGGGTGTTGGACATGATTGACTTACTAGAGGTGGACCAACAGGATTTTTTCTTTATGGGCTTATGGGCCATCTGGGCTGAGCGTAAAAATATGGTCTGGAAAGGTGCTAATTTCCAGTCAATGAATATGCTTCACTGGACTACCAAAATGCTAGATGATTTTCAGAAGTATCACCAAAAGCCAGTCAAGAAGCAGAAGAGACCGTTGACTAAGTGGAAAAATCCTCCTAGTGGTCGACTTAAAATTAATGTTGATGGGGCCTTCAGACCGGAAGATGGGAATGGAGGTATTGGGGTAGTAGTCAGAAATGATGCTGGTATGGGTATTGCTGTTTTGGCTAGACCTTTTCTACATGCACACTCGGTCTTAAATATGGAAGCGGAGGCGTGTAGTCTACTTCTTGGGATCCACCAAGGTTGGGCTGACATAGATGTTGAAAGCGACTCTGCCATTCTGATTGCTGCTCTCAATAGGGGGAGAAGAATCTCTCAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

37.31

Weight (kDa)

9.27

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 74 - 144 1e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 246 - 324 1.7e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 465
AccI GTMKAC 2 cut(s) 724, 883
AciI CCGC 1 cut(s) 869
AclWI GGATC 2 cut(s) 889, 902
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 736
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 230, 391
AfiI CCNNNNNNNGG 3 cut(s) 719, 764, 907
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 3 cut(s) 295, 403, 926
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 280, 682
Alw44I GTGCAC 1 cut(s) 249
AlwI GGATC 2 cut(s) 889, 902
AoxI GGCC 2 cut(s) 555, 747
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 317, 950
ApoI RAATTY 1 cut(s) 255
AseI ATTAAT 1 cut(s) 735
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 4 cut(s) 440, 523, 555, 747
AsuHPI GGTGA 2 cut(s) 56, 653
AsuII TTCGAA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 440, 523
BaeGI GKGCMC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 894
BbrPI CACGTG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 329, 937
BccI CCATC 5 cut(s) 52, 203, 566, 737, 758
BcoDI GTCTC 2 cut(s) 280, 682
BfaI CTAG 4 cut(s) 515, 641, 717, 828
BglI GCCNNNNNGGC 1 cut(s) 563
BisI GCNGC 2 cut(s) 318, 951
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 2 cut(s) 319, 952
BmcAI AGTACT 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 440, 523
BmgT120I GGNCC 4 cut(s) 440, 523, 555, 747
BmiI GGNNCC 2 cut(s) 748, 896
BmsI GCATC 2 cut(s) 197, 790
BpmI CTGGAG 1 cut(s) 253
Bpu1102I GCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 1 cut(s) 901
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 764, 907
Bse1I ACTGG 4 cut(s) 236, 604, 629, 671
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 901
BseGI GGATG 2 cut(s) 63, 259
BseLI CCNNNNNNNGG 3 cut(s) 719, 764, 907
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 4 cut(s) 236, 604, 629, 671
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 2 cut(s) 329, 937
BseYI CCCAGC 1 cut(s) 469
BshFI GGCC 2 cut(s) 557, 749
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 719, 764, 907
BsmAI GTCTC 2 cut(s) 280, 682
BsnI GGCC 2 cut(s) 557, 749
Bso31I GGTCTC 1 cut(s) 682
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 894
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 1 cut(s) 869
BspANI GGCC 2 cut(s) 557, 749
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 748, 896
BspPI GGATC 2 cut(s) 889, 902
BspT104I TTCGAA 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 682
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 4 cut(s) 236, 604, 629, 671
BssECI CCNNGG 1 cut(s) 901
BssMI GATC 1 cut(s) 894
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 901
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 1 cut(s) 680
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 139
BstDEI CTNAG 6 cut(s) 74, 270, 446, 567, 699, 978
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 63, 259
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 1 cut(s) 897
BstMAI GTCTC 2 cut(s) 280, 682
BstMBI GATC 1 cut(s) 894
BstMWI GCNNNNNNNGC 4 cut(s) 366, 470, 563, 824
BstNSI RCATGY 3 cut(s) 364, 458, 845
BstPI GGTNACC 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 329, 937
BstX2I RGATCY 1 cut(s) 894
BstYI RGATCY 1 cut(s) 894
BsuRI GGCC 2 cut(s) 557, 749
BtsCI GGATG 2 cut(s) 63, 259
BtsIMutI CAGTG 1 cut(s) 622
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 4 cut(s) 440, 523, 555, 747
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 229, 390
CspCI CAANNNNNGTGG 4 cut(s) 432, 467, 887, 922
CviAII CATG 6 cut(s) 361, 370, 413, 455, 502, 842
CviQI GTAC 2 cut(s) 229, 390
DdeI CTNAG 6 cut(s) 74, 270, 446, 567, 699, 978
DpnI GATC 1 cut(s) 896
DpnII GATC 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
Eco130I CCWWGG 1 cut(s) 901
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 440, 523
Eco57I CTGAAG 1 cut(s) 736
Eco72I CACGTG 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 747
EcoO65I GGTNACC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 901
ErhI CCWWGG 1 cut(s) 901
FaeI CATG 6 cut(s) 364, 373, 416, 458, 505, 845
FatI CATG 6 cut(s) 360, 369, 412, 454, 501, 841
FblI GTMKAC 2 cut(s) 724, 883
Fnu4HI GCNGC 2 cut(s) 318, 951
FokI GGATG 2 cut(s) 70, 246
Fsp4HI GCNGC 2 cut(s) 318, 951
FspAI RTGCGCAY 1 cut(s) 465
FspBI CTAG 4 cut(s) 515, 641, 717, 828
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 318, 951
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 2 cut(s) 557, 749
HapII CCGG 1 cut(s) 758
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 364, 373, 416, 458, 505, 845
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 3 cut(s) 349, 696, 725
HindII GTYRAC 3 cut(s) 349, 696, 725
HinfI GANTC 2 cut(s) 932, 972
HpaII CCGG 1 cut(s) 758
HphI GGTGA 2 cut(s) 56, 653
Hpy166II GTNNAC 7 cut(s) 251, 349, 392, 523, 696, 725, 884
Hpy188I TCNGA 5 cut(s) 654, 755, 794, 945, 981
Hpy188III TCNNGA 3 cut(s) 485, 586, 676
Hpy8I GTNNAC 7 cut(s) 251, 349, 392, 523, 696, 725, 884
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 35, 760
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 2 cut(s) 153, 331
HpyCH4V TGCA 8 cut(s) 188, 251, 328, 360, 369, 421, 454, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 470, 563, 824
HpyF3I CTNAG 6 cut(s) 74, 270, 446, 567, 699, 978
HpySE526I ACGT 2 cut(s) 153, 331
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 364, 373, 416, 458, 505, 845
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 1 cut(s) 894
LmnI GCTCC 2 cut(s) 234, 374
Lsp1109I GCAGC 2 cut(s) 329, 937
LweI GCATC 2 cut(s) 197, 790
MaeI CTAG 4 cut(s) 515, 641, 717, 828
MaeII ACGT 2 cut(s) 153, 331
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 896
MboI GATC 1 cut(s) 894
MboII GAAGA 5 cut(s) 218, 307, 697, 773, 981
MflI RGATCY 1 cut(s) 894
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 4 cut(s) 255, 355, 598, 732
MlyI GAGTC 1 cut(s) 926
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 9 cut(s) 18, 48, 81, 85, 511, 723, 767, 865, 975
MseI TTAA 3 cut(s) 729, 735, 857
MslI CAYNNNNRTG 2 cut(s) 167, 459
MspI CCGG 1 cut(s) 758
MwoI GCNNNNNNNGC 4 cut(s) 366, 470, 563, 824
NdeII GATC 1 cut(s) 894
NlaIII CATG 6 cut(s) 364, 373, 416, 458, 505, 845
NlaIV GGNNCC 2 cut(s) 748, 896
NsbI TGCGCA 1 cut(s) 465
NspI RCATGY 3 cut(s) 364, 458, 845
NspV TTCGAA 1 cut(s) 139
PfeI GAWTC 1 cut(s) 972
PkrI GCNGC 2 cut(s) 319, 952
PleI GAGTC 1 cut(s) 926
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
PpsI GAGTC 1 cut(s) 926
Ppu21I YACGTR 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 735
PspCI CACGTG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 748, 896
PspPI GGNCC 4 cut(s) 440, 523, 555, 747
PsuI RGATCY 1 cut(s) 894
RsaI GTAC 2 cut(s) 230, 391
RsaNI GTAC 2 cut(s) 229, 390
RseI CAYNNNNRTG 2 cut(s) 167, 459
SalI GTCGAC 1 cut(s) 723
SaqAI TTAA 3 cut(s) 729, 735, 857
SatI GCNGC 2 cut(s) 318, 951
Sau3AI GATC 1 cut(s) 894
Sau96I GGNCC 4 cut(s) 440, 523, 555, 747
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 1 cut(s) 926
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 2 cut(s) 197, 790
SfuI TTCGAA 1 cut(s) 139
SinI GGWCC 2 cut(s) 440, 523
SmiMI CAYNNNNRTG 2 cut(s) 167, 459
Sse9I AATT 4 cut(s) 255, 355, 598, 732
SsiI CCGC 1 cut(s) 869
SspI AATATT 1 cut(s) 301
SspMI CTAG 4 cut(s) 515, 641, 717, 828
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 2 cut(s) 156, 334
TaqI TCGA 3 cut(s) 90, 139, 724
TaqII GACCGA 1 cut(s) 841
TasI AATT 4 cut(s) 255, 355, 598, 732
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 972
Tru1I TTAA 3 cut(s) 729, 735, 857
Tru9I TTAA 3 cut(s) 729, 735, 857
TscAI CASTG 1 cut(s) 629
TseI GCWGC 2 cut(s) 317, 950
TspDTI ATGAA 3 cut(s) 186, 248, 626
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 2 cut(s) 440, 523
VspI ATTAAT 1 cut(s) 735
XapI RAATTY 1 cut(s) 255
XceI RCATGY 3 cut(s) 364, 458, 845
XmiI GTMKAC 2 cut(s) 724, 883
XspI CTAG 4 cut(s) 515, 641, 717, 828
ZrmI AGTACT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.