Rh1DG021400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
3325527 .. 3330433
4907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG021400.1

Sequence Viewer

Length: 816 bp
ATGGTATGCTATGAATGTGTATGGGGTAGATGTGAGGGAAGGCGAATGTCGAGCGGTGGAGATGGGAGTCGCTGCTGCAGCAAAGGCAGAGTTATGCTGCTGGCTCTGACAACCACCCATCCATCCGAAACACTCCTCACAGCGGCCACCACCTCTAACCCGACCCGGTCCCGAATCCCAGTAATCTTGGTCCGGATTCAGCTGATAGACGCCAAGAACTGGGCAAGTCCCATCCGGGTGTGCGACCGACAACGAGGTAGGGGCAGGATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACACTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGAGTTGACAAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTGAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACGAGACGCAAGCTTCGCATGAGGAACATAGGAAAGCTATGGAAAAACAGGTGATAGAAGTAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACGGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGATGGACAGAATGGACCCAAAATGCGAAAAGGGAGAGGGTCGAAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.02

Weight (kDa)

9.03

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 1 cut(s) 639
AccIII TCCGGA 1 cut(s) 192
AciI CCGC 3 cut(s) 54, 143, 337
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 470, 592
AfiI CCNNNNNNNGG 2 cut(s) 142, 219
AgsI TTSAA 3 cut(s) 295, 317, 481
AluBI AGCT 8 cut(s) 202, 298, 404, 410, 536, 560, 743, 748
AluI AGCT 8 cut(s) 202, 298, 404, 410, 536, 560, 743, 748
Alw26I GTCTC 3 cut(s) 521, 649, 730
Aor13HI TCCGGA 1 cut(s) 192
AoxI GGCC 3 cut(s) 144, 362, 474
ApeKI GCWGC 4 cut(s) 72, 75, 78, 97
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspS9I GGNCC 3 cut(s) 168, 190, 773
AsuC2I CCSGG 2 cut(s) 166, 236
AsuHPI GGTGA 1 cut(s) 586
AvaII GGWCC 3 cut(s) 168, 190, 773
BbvI GCAGC 4 cut(s) 59, 62, 84, 90
BccI CCATC 6 cut(s) 56, 126, 130, 239, 640, 755
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 2 cut(s) 166, 236
BcoDI GTCTC 3 cut(s) 521, 649, 730
BfaI CTAG 2 cut(s) 629, 659
BfmI CTRYAG 3 cut(s) 76, 405, 603
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 6 cut(s) 73, 76, 79, 98, 144, 338
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 6 cut(s) 74, 77, 80, 99, 145, 339
Bme1390I CCNGG 2 cut(s) 166, 236
Bme18I GGWCC 3 cut(s) 168, 190, 773
BmgT120I GGNCC 3 cut(s) 168, 190, 773
BmiI GGNNCC 2 cut(s) 170, 775
BmrFI CCNGG 2 cut(s) 166, 236
BmrI ACTGGG 2 cut(s) 173, 229
BmsI GCATC 1 cut(s) 615
BmuI ACTGGG 2 cut(s) 173, 229
Bpu1102I GCTNAGC 1 cut(s) 744
BpuMI CCSGG 2 cut(s) 166, 236
Bsa29I ATCGAT 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 219
Bse1I ACTGG 2 cut(s) 179, 224
BseAI TCCGGA 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 462
BseGI GGATG 5 cut(s) 118, 122, 231, 273, 754
BseLI CCNNNNNNNGG 2 cut(s) 142, 219
BseMII CTCAG 2 cut(s) 402, 758
BseNI ACTGG 2 cut(s) 179, 224
BseRI GAGGAG 2 cut(s) 125, 503
BseXI GCAGC 4 cut(s) 59, 62, 84, 90
Bsh1236I CGCG 1 cut(s) 639
Bsh1285I CGRYCG 2 cut(s) 247, 432
BshFI GGCC 3 cut(s) 146, 364, 476
BshVI ATCGAT 1 cut(s) 462
BsiEI CGRYCG 2 cut(s) 247, 432
BsiSI CCGG 3 cut(s) 166, 193, 235
BslFI GGGAC 2 cut(s) 154, 213
BslI CCNNNNNNNGG 2 cut(s) 142, 219
BsmAI GTCTC 3 cut(s) 521, 649, 730
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 2 cut(s) 154, 213
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 3 cut(s) 146, 364, 476
Bsp13I TCCGGA 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 2 cut(s) 463, 751
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 3 cut(s) 54, 143, 337
BspANI GGCC 3 cut(s) 146, 364, 476
BspCNI CTCAG 2 cut(s) 403, 757
BspDI ATCGAT 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 192
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 2 cut(s) 170, 775
BspMAI CTGCAG 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 179, 224
BssMI GATC 2 cut(s) 463, 751
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 604, 722
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 468
BstC8I GCNNGC 3 cut(s) 102, 366, 534
BstDEI CTNAG 2 cut(s) 411, 744
BstF5I GGATG 5 cut(s) 118, 122, 231, 273, 754
BstFNI CGCG 1 cut(s) 639
BstKTI GATC 2 cut(s) 466, 754
BstMAI GTCTC 3 cut(s) 521, 649, 730
BstMBI GATC 2 cut(s) 463, 751
BstMCI CGRYCG 2 cut(s) 247, 432
BstMWI GCNNNNNNNGC 4 cut(s) 78, 84, 343, 538
BstSCI CCNGG 2 cut(s) 164, 234
BstSFI CTRYAG 3 cut(s) 76, 405, 603
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 4 cut(s) 59, 62, 84, 90
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 3 cut(s) 146, 364, 476
BsuTUI ATCGAT 1 cut(s) 462
BtsCI GGATG 5 cut(s) 118, 122, 231, 273, 754
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 332, 627
Cac8I GCNNGC 3 cut(s) 102, 366, 534
Cfr13I GGNCC 3 cut(s) 168, 190, 773
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 2 cut(s) 218, 538
Csp6I GTAC 2 cut(s) 469, 591
CviAII CATG 1 cut(s) 542
CviQI GTAC 2 cut(s) 469, 591
DdeI CTNAG 2 cut(s) 411, 744
DpnI GATC 2 cut(s) 465, 753
DpnII GATC 2 cut(s) 463, 751
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco147I AGGCCT 1 cut(s) 476
Eco47I GGWCC 3 cut(s) 168, 190, 773
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 1 cut(s) 545
FaiI YATR 9 cut(s) 7, 12, 22, 95, 383, 543, 552, 563, 681
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 2 cut(s) 154, 213
FatI CATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 6 cut(s) 73, 76, 79, 98, 144, 338
FokI GGATG 5 cut(s) 105, 109, 218, 280, 741
Fsp4HI GCNGC 6 cut(s) 73, 76, 79, 98, 144, 338
FspBI CTAG 2 cut(s) 629, 659
GluI GCNGC 6 cut(s) 73, 76, 79, 98, 144, 338
HaeIII GGCC 3 cut(s) 146, 364, 476
HapII CCGG 3 cut(s) 166, 193, 235
HgaI GACGC 2 cut(s) 218, 538
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 545
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 2 cut(s) 296, 534
HinfI GANTC 3 cut(s) 67, 174, 196
HpaII CCGG 3 cut(s) 166, 193, 235
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 417, 591
Hpy188I TCNGA 4 cut(s) 108, 127, 442, 499
Hpy188III TCNNGA 3 cut(s) 171, 193, 758
Hpy8I GTNNAC 2 cut(s) 417, 591
HpyAV CCTTC 2 cut(s) 33, 445
HpyCH4III ACNGT 2 cut(s) 604, 722
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 2 cut(s) 78, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 84, 343, 538
HpyF3I CTNAG 2 cut(s) 411, 744
HpySE526I ACGT 1 cut(s) 593
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 545
Kpn2I TCCGGA 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 2 cut(s) 463, 751
Lsp1109I GCAGC 4 cut(s) 59, 62, 84, 90
LweI GCATC 1 cut(s) 615
MaeI CTAG 2 cut(s) 629, 659
MaeII ACGT 1 cut(s) 593
MalI GATC 2 cut(s) 465, 753
MbiI CCGCTC 1 cut(s) 54
MboI GATC 2 cut(s) 463, 751
MboII GAAGA 4 cut(s) 296, 664, 721, 814
MluCI AATT 1 cut(s) 443
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 9 cut(s) 28, 146, 163, 248, 319, 481, 538, 676, 788
MroI TCCGGA 1 cut(s) 192
MseI TTAA 2 cut(s) 300, 669
MslI CAYNNNNRTG 2 cut(s) 236, 759
MspA1I CMGCKG 2 cut(s) 143, 202
MspI CCGG 3 cut(s) 166, 193, 235
MspR9I CCNGG 2 cut(s) 166, 236
Mva1269I GAATGC 1 cut(s) 323
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 78, 84, 343, 538
NciI CCSGG 2 cut(s) 166, 236
NdeII GATC 2 cut(s) 463, 751
NlaIII CATG 1 cut(s) 545
NlaIV GGNNCC 2 cut(s) 170, 775
PceI AGGCCT 1 cut(s) 476
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 174, 196
PflFI GACNNNGTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 6 cut(s) 74, 77, 80, 99, 145, 339
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 170, 775
PspPI GGNCC 3 cut(s) 168, 190, 773
PstI CTGCAG 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 470, 592
RsaNI GTAC 2 cut(s) 469, 591
RseI CAYNNNNRTG 2 cut(s) 236, 759
SaqAI TTAA 2 cut(s) 300, 669
SatI GCNGC 6 cut(s) 73, 76, 79, 98, 144, 338
Sau3AI GATC 2 cut(s) 463, 751
Sau96I GGNCC 3 cut(s) 168, 190, 773
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 166, 236
SfaNI GCATC 1 cut(s) 615
SfcI CTRYAG 3 cut(s) 76, 405, 603
SinI GGWCC 3 cut(s) 168, 190, 773
SmiMI CAYNNNNRTG 2 cut(s) 236, 759
Sse9I AATT 1 cut(s) 443
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 3 cut(s) 54, 143, 337
SspMI CTAG 2 cut(s) 629, 659
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 164, 234
TaaI ACNGT 2 cut(s) 604, 722
TaiI ACGT 1 cut(s) 596
TaqI TCGA 5 cut(s) 50, 428, 462, 707, 800
TaqII GACCGA 2 cut(s) 261, 446
TasI AATT 1 cut(s) 443
TatI WGTACW 1 cut(s) 468
TauI GCSGC 2 cut(s) 146, 340
TfiI GAWTC 2 cut(s) 174, 196
Tru1I TTAA 2 cut(s) 300, 669
Tru9I TTAA 2 cut(s) 300, 669
TscAI CASTG 2 cut(s) 339, 627
TseI GCWGC 4 cut(s) 72, 75, 78, 97
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 339, 627
Tth111I GACNNNGTC 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 3 cut(s) 168, 190, 773
XapI RAATTY 1 cut(s) 443
XspI CTAG 2 cut(s) 629, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.