Rh3DG186400

Threonine dehydratase biosynthetic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000499
Physical Location & Seq
Forward (+)
16566187 .. 16566570
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG186400.1

Sequence Viewer

Length: 291 bp
ATGGATGACAATGGAGTTAACGCCATCTATTTTACAATCTTCTCTTTGTATACTATTGGCTACGGAGACTTTTCTTTCAAAGCCACTCCTGGGAAGTTGTTTGCTTTGTTTTGGCTTCCATTGGGCACATTAATTGTTAGTCGAGCTGCATCTTACCTACGTGCACAGAGGCATCGGATTTGTGTTGTTTGTGTTTGGAAGAACAAGAACACTAAATCAACGGTGGAGGCTCAGCCAAAAATTGCTTTAGGGCAGCAATTTGAAAATGGTATTCATGTGGAAACACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP Thr_dehydrat_C

Protein Analysis

96

Amino Acids

10.84

Weight (kDa)

9.51

Isoelectric Point (pI)

10.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 4 - 53 8.5e-11 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 79, 263
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 60
Alw44I GTGCAC 1 cut(s) 162
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 146, 253
AseI ATTAAT 1 cut(s) 131
BaeGI GKGCMC 2 cut(s) 128, 166
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 133, 265
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 60
BisI GCNGC 2 cut(s) 147, 254
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 2 cut(s) 148, 255
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 158, 181
Bpu1102I GCTNAGC 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 245
BseSI GKGCMC 2 cut(s) 128, 166
BseXI GCAGC 2 cut(s) 133, 265
BsiHKAI GWGCWC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 128, 166
Bsp1720I GCTNAGC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 89
BssNAI GTATAC 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 128, 166
BstV1I GCAGC 2 cut(s) 133, 265
BstZ17I GTATAC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 10
CviAII CATG 1 cut(s) 275
CviJI RGCY 6 cut(s) 60, 83, 115, 146, 230, 235
CviKI_1 RGCY 6 cut(s) 60, 83, 115, 146, 230, 235
DdeI CTNAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 278
FaiI YATR 2 cut(s) 51, 276
FatI CATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 147, 254
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 147, 254
GluI GCNGC 2 cut(s) 147, 254
Hin1II CATG 1 cut(s) 278
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 19, 51, 164
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 3 cut(s) 19, 51, 164
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 2 cut(s) 160, 286
HpyCH4V TGCA 2 cut(s) 149, 164
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 160, 286
Hsp92II CATG 1 cut(s) 278
KspAI GTTAAC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 75, 102
Lsp1109I GCAGC 2 cut(s) 133, 265
LweI GCATC 2 cut(s) 158, 181
MaeII ACGT 2 cut(s) 160, 286
MboII GAAGA 2 cut(s) 31, 211
MhlI GDGCHC 2 cut(s) 128, 166
MluCI AATT 3 cut(s) 132, 240, 257
MnlI CCTC 2 cut(s) 162, 220
MseI TTAA 2 cut(s) 18, 131
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NlaIII CATG 1 cut(s) 278
PkrI GCNGC 2 cut(s) 148, 255
Ppu21I YACGTR 1 cut(s) 161
PshBI ATTAAT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 18, 131
SatI GCNGC 2 cut(s) 147, 254
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 2 cut(s) 128, 166
SetI ASST 4 cut(s) 148, 159, 163, 289
SfaNI GCATC 2 cut(s) 158, 181
SgeI CNNG 6 cut(s) 101, 102, 155, 173, 217, 287
Sse9I AATT 3 cut(s) 132, 240, 257
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 2 cut(s) 163, 289
TaqI TCGA 1 cut(s) 142
TasI AATT 3 cut(s) 132, 240, 257
Tru1I TTAA 2 cut(s) 18, 131
Tru9I TTAA 2 cut(s) 18, 131
TseI GCWGC 2 cut(s) 146, 253
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 78
VneI GTGCAC 1 cut(s) 162
VspI ATTAAT 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.