Rh1DG021800

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
3384610 .. 3389987
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG021800.1

Sequence Viewer

Length: 954 bp
ATGTTTCCCGTTGCAGAGGAGGCTGACGAAGAGGGATGGCTGGAGTTCCGGGTTGACGGAGGACAGTTGATTAGGGAGCGGGCTAGACTTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGAAAGAGAAGAAGAGATTCAGACTGATGGGATTGAGCCGCTGCAGTTGAGGAATGCGCAATTGGCAGAGGAAGTTGCAACAATCAAAGCGAAGCTGGCAACTGCCGAAGAAAAACTGGGTGTGGATTCCACAGCGGTTCCGGCTGGACCTCGTTCTCAGGGTACTGCCTTAGGCCTCTTACCGTACATGGCTATGGTTTATGTGTCGTTATGCTGGGTATTTGCAGGTCTATTGATTTTTCATAATATCCATGACTTTGGTAAGCGTGAGGATCAGTACACATTTGTTGATGCATTTTATTTGACTTCCTATACGGCATCCACGGTTGGTTATGGGGACATTCCTCCTAGAGAGGCTCCTGCTCTTATTATCTCTGATGTGGTAGGTATATTTGGTAGTTTTGTATCGATTATCCTCTGCCATTTTGTGAGTCGGCTAGCCATTTGGTTGGATCAGAGGTTTTTATCACAGCAGAGCCACCGTGTGAGATTCTTCTATCAGGTCCTTTCATCTATTGGCACGATTGTGATAGTTGTATCTTCAGGGATAGCAGGCCTTTATATTTTTGAGCGGGAGCGGCTAGCTCATGATTTACCTGATCATTCATCCTCACGGATCTTTCTTGACATACTTCACCTGACAGTTATGACTACGACTACCGTTGGATATGGAGATTTGGCCTTTGCTACTGCAGGTGGGAGGTTATTCGCCACATTGTGGATTCCTTTCTCTACTACCTTCTATTCAGTCGCGATCACATTCCTGGTCCAGGCTATTCTGAGGGCTATGTCACGTCTATCTTTACGAGGACACATCCGTGCATGGAGCAGCTAG

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

5.08

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 110 - 181 2e-08 Ion channel
Ion_trans_2 PF07885 246 - 299 6.6e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 803
Acc16I TGCGCA 1 cut(s) 177
Acc36I ACCTGC 2 cut(s) 335, 803
AccB7I CCANNNNNTGG 1 cut(s) 837
AccBSI CCGCTC 3 cut(s) 79, 691, 697
AccII CGCG 1 cut(s) 872
AciI CCGC 5 cut(s) 79, 158, 254, 691, 697
AclWI GGATC 3 cut(s) 399, 579, 743
AcuI CTGAAG 1 cut(s) 645
AdeI CACNNNGTG 2 cut(s) 604, 837
AfaI GTAC 3 cut(s) 283, 305, 398
AfiI CCNNNNNNNGG 2 cut(s) 837, 889
AgsI TTSAA 1 cut(s) 107
AjiI CACGTC 1 cut(s) 914
AjnI CCWGG 2 cut(s) 882, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AleI CACNNNNGTG 2 cut(s) 644, 936
AluBI AGCT 3 cut(s) 214, 704, 951
AluI AGCT 3 cut(s) 214, 704, 951
AlwI GGATC 3 cut(s) 399, 579, 743
AoxI GGCC 3 cut(s) 292, 673, 798
ApeKI GCWGC 3 cut(s) 94, 160, 948
Asp700I GAANNNNTTC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 266, 622, 886
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 746
AsuNHI GCTAGC 2 cut(s) 556, 700
AvaII GGWCC 3 cut(s) 266, 622, 886
AxyI CCTNAGG 1 cut(s) 289
BbvI GCAGC 2 cut(s) 106, 147
BccI CCATC 2 cut(s) 30, 140
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 884, 890
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 50
BfaI CTAG 5 cut(s) 84, 468, 557, 701, 952
BfmI CTRYAG 2 cut(s) 161, 810
BfuAI ACCTGC 2 cut(s) 335, 803
BisI GCNGC 5 cut(s) 95, 158, 161, 698, 949
BlsI GCNGC 5 cut(s) 96, 159, 162, 699, 950
Bme1390I CCNGG 3 cut(s) 50, 884, 890
Bme18I GGWCC 3 cut(s) 266, 622, 886
BmgBI CACGTC 1 cut(s) 914
BmgT120I GGNCC 3 cut(s) 266, 622, 886
BmiI GGNNCC 2 cut(s) 258, 477
BmrFI CCNGG 3 cut(s) 50, 884, 890
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 400, 446
BmtI GCTAGC 2 cut(s) 560, 704
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 2 cut(s) 837, 889
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 884, 890
BseCI ATCGAT 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 4 cut(s) 41, 437, 725, 933
BseLI CCNNNNNNNGG 2 cut(s) 837, 889
BseMII CTCAG 2 cut(s) 290, 890
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 32, 128
BseXI GCAGC 2 cut(s) 106, 147
BseYI CCCAGC 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 872
BshFI GGCC 3 cut(s) 294, 675, 800
BshVI ATCGAT 1 cut(s) 527
BsiSI CCGG 2 cut(s) 49, 260
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 837, 889
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 3 cut(s) 294, 675, 800
Bsp143I GATC 5 cut(s) 391, 571, 718, 735, 873
Bsp68I TCGCGA 1 cut(s) 872
BspACI CCGC 5 cut(s) 79, 158, 254, 691, 697
BspANI GGCC 3 cut(s) 294, 675, 800
BspCNI CTCAG 2 cut(s) 289, 891
BspDI ATCGAT 1 cut(s) 527
BspFNI CGCG 1 cut(s) 872
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 2 cut(s) 258, 477
BspMAI CTGCAG 2 cut(s) 165, 814
BspMI ACCTGC 2 cut(s) 335, 803
BspOI GCTAGC 2 cut(s) 560, 704
BspPI GGATC 3 cut(s) 399, 579, 743
BsrBI CCGCTC 3 cut(s) 79, 691, 697
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 5 cut(s) 391, 571, 718, 735, 873
Bst2UI CCWGG 2 cut(s) 884, 890
Bst4CI ACNGT 6 cut(s) 66, 303, 445, 602, 763, 781
Bst6I CTCTTC 2 cut(s) 24, 126
BstC8I GCNNGC 5 cut(s) 81, 216, 558, 673, 702
BstDEI CTNAG 3 cut(s) 276, 289, 899
BstDSI CCRYGG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 4 cut(s) 41, 437, 725, 933
BstFNI CGCG 1 cut(s) 872
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 394, 574, 721, 738, 876
BstMBI GATC 5 cut(s) 391, 571, 718, 735, 873
BstMWI GCNNNNNNNGC 5 cut(s) 20, 182, 215, 260, 697
BstNI CCWGG 2 cut(s) 884, 890
BstSCI CCNGG 3 cut(s) 48, 882, 888
BstSFI CTRYAG 2 cut(s) 161, 810
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 2 cut(s) 106, 147
BstX2I RGATCY 1 cut(s) 735
BstXI CCANNNNNNTGG 2 cut(s) 377, 568
BstYI RGATCY 1 cut(s) 735
Bsu15I ATCGAT 1 cut(s) 527
Bsu36I CCTNAGG 1 cut(s) 289
BsuRI GGCC 3 cut(s) 294, 675, 800
BsuTUI ATCGAT 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 914
BtsCI GGATG 4 cut(s) 41, 437, 725, 933
BtuMI TCGCGA 1 cut(s) 872
BveI ACCTGC 2 cut(s) 335, 803
Cac8I GCNNGC 5 cut(s) 81, 216, 558, 673, 702
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 266, 622, 886
ClaI ATCGAT 1 cut(s) 527
Csp6I GTAC 3 cut(s) 282, 304, 397
CviAII CATG 5 cut(s) 98, 307, 371, 707, 942
CviQI GTAC 3 cut(s) 282, 304, 397
DdeI CTNAG 3 cut(s) 276, 289, 899
DpnI GATC 5 cut(s) 393, 573, 720, 737, 875
DpnII GATC 5 cut(s) 391, 571, 718, 735, 873
DraIII CACNNNGTG 2 cut(s) 604, 837
Eam1104I CTCTTC 2 cut(s) 24, 126
EarI CTCTTC 2 cut(s) 24, 126
Eco147I AGGCCT 2 cut(s) 294, 675
Eco47I GGWCC 3 cut(s) 266, 622, 886
Eco57I CTGAAG 1 cut(s) 645
Eco81I CCTNAGG 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 882, 888
EcoT22I ATGCAT 1 cut(s) 415
FaeI CATG 5 cut(s) 101, 310, 374, 710, 945
FaqI GGGAC 1 cut(s) 470
FatI CATG 5 cut(s) 97, 306, 370, 706, 941
FauI CCCGC 2 cut(s) 72, 684
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 5 cut(s) 95, 158, 161, 698, 949
FokI GGATG 4 cut(s) 48, 424, 712, 920
Fsp4HI GCNGC 5 cut(s) 95, 158, 161, 698, 949
FspBI CTAG 5 cut(s) 84, 468, 557, 701, 952
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 5 cut(s) 95, 158, 161, 698, 949
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 3 cut(s) 294, 675, 800
HapII CCGG 2 cut(s) 49, 260
HhaI GCGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 101, 310, 374, 710, 945
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 5 cut(s) 136, 245, 550, 609, 841
HpaII CCGG 2 cut(s) 49, 260
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 2 cut(s) 55, 399
Hpy188I TCNGA 4 cut(s) 141, 496, 576, 900
Hpy188III TCNNGA 3 cut(s) 707, 743, 871
Hpy8I GTNNAC 2 cut(s) 55, 399
HpyAV CCTTC 1 cut(s) 868
HpyCH4III ACNGT 6 cut(s) 66, 303, 445, 602, 763, 781
HpyCH4IV ACGT 1 cut(s) 913
HpyCH4V TGCA 7 cut(s) 14, 163, 197, 344, 413, 812, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 182, 215, 260, 697
HpyF3I CTNAG 3 cut(s) 276, 289, 899
HpySE526I ACGT 1 cut(s) 913
Hsp92II CATG 5 cut(s) 101, 310, 374, 710, 945
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 391, 571, 718, 735, 873
LmnI GCTCC 4 cut(s) 76, 481, 694, 945
Lsp1109I GCAGC 2 cut(s) 106, 147
LweI GCATC 2 cut(s) 400, 446
MaeI CTAG 5 cut(s) 84, 468, 557, 701, 952
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 1 cut(s) 909
MalI GATC 5 cut(s) 393, 573, 720, 737, 875
MbiI CCGCTC 3 cut(s) 79, 691, 697
MboI GATC 5 cut(s) 391, 571, 718, 735, 873
MboII GAAGA 7 cut(s) 41, 131, 140, 143, 239, 604, 651
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 1 cut(s) 735
MluCI AATT 2 cut(s) 102, 179
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 2 cut(s) 549, 763
Mph1103I ATGCAT 1 cut(s) 415
MroXI GAANNNNTTC 1 cut(s) 135
MslI CAYNNNNRTG 3 cut(s) 311, 644, 936
MspA1I CMGCKG 2 cut(s) 160, 254
MspI CCGG 2 cut(s) 49, 260
MspR9I CCNGG 3 cut(s) 50, 884, 890
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 2 cut(s) 884, 890
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 5 cut(s) 20, 182, 215, 260, 697
NciI CCSGG 1 cut(s) 50
NdeII GATC 5 cut(s) 391, 571, 718, 735, 873
NheI GCTAGC 2 cut(s) 556, 700
NlaIII CATG 5 cut(s) 101, 310, 374, 710, 945
NlaIV GGNNCC 2 cut(s) 258, 477
NmuCI GTSAC 1 cut(s) 909
NruI TCGCGA 1 cut(s) 872
NsbI TGCGCA 1 cut(s) 177
NsiI ATGCAT 1 cut(s) 415
OliI CACNNNNGTG 2 cut(s) 644, 936
PagI TCATGA 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 803
PceI AGGCCT 2 cut(s) 294, 675
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 4 cut(s) 136, 245, 609, 841
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 5 cut(s) 96, 159, 162, 699, 950
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 2 cut(s) 882, 888
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 2 cut(s) 882, 888
PspN4I GGNNCC 2 cut(s) 258, 477
PspPI GGNCC 3 cut(s) 266, 622, 886
PspPPI RGGWCCY 1 cut(s) 622
PstI CTGCAG 2 cut(s) 165, 814
PsuI RGATCY 1 cut(s) 735
RruI TCGCGA 1 cut(s) 872
RsaI GTAC 3 cut(s) 283, 305, 398
RsaNI GTAC 3 cut(s) 282, 304, 397
RseI CAYNNNNRTG 3 cut(s) 311, 644, 936
SatI GCNGC 5 cut(s) 95, 158, 161, 698, 949
Sau3AI GATC 5 cut(s) 391, 571, 718, 735, 873
Sau96I GGNCC 3 cut(s) 266, 622, 886
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 3 cut(s) 50, 884, 890
SfaNI GCATC 2 cut(s) 400, 446
SfcI CTRYAG 2 cut(s) 161, 810
SinI GGWCC 3 cut(s) 266, 622, 886
SmiMI CAYNNNNRTG 3 cut(s) 311, 644, 936
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 102, 179
SseBI AGGCCT 2 cut(s) 294, 675
SsiI CCGC 5 cut(s) 79, 158, 254, 691, 697
SspMI CTAG 5 cut(s) 84, 468, 557, 701, 952
StuI AGGCCT 2 cut(s) 294, 675
StyD4I CCNGG 3 cut(s) 48, 882, 888
TaaI ACNGT 6 cut(s) 66, 303, 445, 602, 763, 781
TaiI ACGT 1 cut(s) 916
TaqI TCGA 1 cut(s) 527
TasI AATT 2 cut(s) 102, 179
TatI WGTACW 1 cut(s) 396
TauI GCSGC 2 cut(s) 160, 700
TfiI GAWTC 4 cut(s) 136, 245, 609, 841
TseFI GTSAC 1 cut(s) 909
TseI GCWGC 3 cut(s) 94, 160, 948
Tsp45I GTSAC 1 cut(s) 909
TspDTI ATGAA 4 cut(s) 114, 350, 618, 714
TspGWI ACGGA 3 cut(s) 72, 748, 926
Van91I CCANNNNNTGG 1 cut(s) 837
VpaK11BI GGWCC 3 cut(s) 266, 622, 886
XagI CCTNNNNNAGG 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 5 cut(s) 84, 468, 557, 701, 952
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.