Rorug01G0011200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000499
Physical Location & Seq
Forward (+)
1898985 .. 1899860
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011200.1

Sequence Viewer

Length: 672 bp
ATGTCAGTCTTCATCTGGAGGACTCAGCACGTGTTTCTTTGTGATCGACTTCTTGGCCCTAAAACCAAATTCCCAAGCTTCAAAGGTACTATTTCTACGATTTGGCGGATGAAATCGGGTCTGTCGATTCAAGACATGGGAGATCGATTTGTGTTTCAGTTTGATCGTGAGGCTGAATGTAACAAAGTATTGCATGGAGGGCCTTGGTTTTACAAGAATACAATGCTCGTGCTTGGTAGGTACGATAGGATAAGCCCAGTGGCTGAAGTCCCCCTGAATCTGGTGGAAACTTGGGTCGTAGTTAAGGGTCTTCCGGTAGGGTTACGAAACAAGGCGGCTTTGAATTTGGTGGGATCAACCTTGGGCTATGATGGCTTGTTGACAAAAGAGAAGGATGAGATCCTAGCTCAACTGCAAGCTTCTGCTTTGGCTAGGCTATCCTTGACGGGAAAATTGCCAAACCATAGATCTGAGGGGGATGGAAACCAGGCTGCTAAGGGTATGCTCACGTTGGTGGATACGGGATCGAGTAGTCAGATTGGAGAGCCGGTGGAAATGGAGTTTTCCTCAGGTTCAGCCTTCGGGGGTTGGAAATACCATGCAAGCTGCACCTTTGTTTGTAGGGTTGAATTTATCTGCTTTGCTGGAGAATTAGACGTCCTAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.6

Weight (kDa)

8.26

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 21 - 81 1.6e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 660
AciI CCGC 2 cut(s) 106, 335
AclWI GGATC 3 cut(s) 361, 394, 532
AcsI RAATTY 3 cut(s) 68, 343, 629
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 2 cut(s) 88, 242
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 4 cut(s) 82, 131, 343, 629
AjnI CCWGG 1 cut(s) 486
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 4 cut(s) 78, 407, 419, 606
AluI AGCT 4 cut(s) 78, 407, 419, 606
AlwI GGATC 3 cut(s) 361, 394, 532
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 2 cut(s) 55, 200
ApeKI GCWGC 2 cut(s) 491, 606
ApoI RAATTY 3 cut(s) 68, 343, 629
AspS9I GGNCC 2 cut(s) 56, 200
AxyI CCTNAGG 1 cut(s) 568
BauI CACGAG 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 478, 593
BccI CCATC 2 cut(s) 365, 473
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 511
BfaI CTAG 2 cut(s) 404, 432
BfuI GTATCC 1 cut(s) 511
BglII AGATCT 1 cut(s) 467
BisI GCNGC 3 cut(s) 336, 492, 607
BlsI GCNGC 3 cut(s) 337, 493, 608
Bme1390I CCNGG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 56, 200
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 2 cut(s) 37, 666
Bpu10I CCTNAGC 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 203, 360
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 257
Bse21I CCTNAGG 1 cut(s) 568
BseBI CCWGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 203, 360
BseGI GGATG 3 cut(s) 114, 400, 484
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 38, 462, 582
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 478, 593
BsgI GTGCAG 1 cut(s) 592
BshFI GGCC 2 cut(s) 57, 202
BshVI ATCGAT 1 cut(s) 145
BsiSI CCGG 2 cut(s) 314, 548
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 57, 202
Bsp143I GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
BspACI CCGC 2 cut(s) 106, 335
BspANI GGCC 2 cut(s) 57, 202
BspCNI CTCAG 3 cut(s) 37, 463, 581
BspDI ATCGAT 1 cut(s) 145
BspPI GGATC 3 cut(s) 361, 394, 532
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 2 cut(s) 203, 360
BssMI GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
BssNI GRCGYC 1 cut(s) 657
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 203, 360
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 657
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 417, 604
BstDEI CTNAG 5 cut(s) 24, 471, 495, 568, 662
BstF5I GGATG 3 cut(s) 114, 400, 484
BstKTI GATC 7 cut(s) 46, 145, 166, 356, 402, 470, 527
BstMBI GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
BstMWI GCNNNNNNNGC 2 cut(s) 199, 372
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 478, 593
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 399, 467
BstYI RGATCY 2 cut(s) 399, 467
Bsu15I ATCGAT 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 568
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 57, 202
BsuTUI ATCGAT 1 cut(s) 145
BtsCI GGATG 3 cut(s) 114, 400, 484
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 417, 604
CaiI CAGNNNCTG 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 56, 200
ClaI ATCGAT 1 cut(s) 145
Csp6I GTAC 2 cut(s) 87, 241
CviAII CATG 3 cut(s) 136, 194, 599
CviQI GTAC 2 cut(s) 87, 241
DdeI CTNAG 5 cut(s) 24, 471, 495, 568, 662
DpnI GATC 7 cut(s) 45, 144, 165, 355, 401, 469, 526
DpnII GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 203, 360
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 203, 360
ErhI CCWWGG 2 cut(s) 203, 360
FaeI CATG 3 cut(s) 139, 197, 602
FaiI YATR 7 cut(s) 137, 195, 369, 465, 503, 600, 670
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 135, 193, 598
Fnu4HI GCNGC 3 cut(s) 336, 492, 607
FokI GGATG 3 cut(s) 121, 407, 491
Fsp4HI GCNGC 3 cut(s) 336, 492, 607
FspBI CTAG 2 cut(s) 404, 432
GluI GCNGC 3 cut(s) 336, 492, 607
GsuI CTGGAG 2 cut(s) 37, 666
HaeIII GGCC 2 cut(s) 57, 202
HapII CCGG 2 cut(s) 314, 548
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 3 cut(s) 139, 197, 602
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 2 cut(s) 76, 417
HinfI GANTC 3 cut(s) 22, 127, 277
HpaII CCGG 2 cut(s) 314, 548
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 2 cut(s) 472, 537
Hpy188III TCNNGA 3 cut(s) 16, 131, 167
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 385, 589
HpyCH4IV ACGT 3 cut(s) 30, 509, 657
HpyCH4V TGCA 4 cut(s) 193, 415, 602, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 372
HpyF3I CTNAG 5 cut(s) 24, 471, 495, 568, 662
HpySE526I ACGT 3 cut(s) 30, 509, 657
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 3 cut(s) 139, 197, 602
Kzo9I GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
LpnPI CCDG 9 cut(s) 266, 270, 287, 327, 473, 500, 555, 561, 630
Lsp1109I GCAGC 2 cut(s) 478, 593
MaeI CTAG 2 cut(s) 404, 432
MaeII ACGT 3 cut(s) 30, 509, 657
MaeIII GTNAC 2 cut(s) 179, 321
MalI GATC 7 cut(s) 45, 144, 165, 355, 401, 469, 526
MboI GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
MboII GAAGA 1 cut(s) 302
MflI RGATCY 2 cut(s) 399, 467
MluCI AATT 5 cut(s) 68, 343, 452, 629, 650
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 5 cut(s) 12, 163, 191, 466, 577
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 512
MspI CCGG 2 cut(s) 314, 548
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 199, 372
NdeII GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
NlaIII CATG 3 cut(s) 139, 197, 602
OliI CACNNNNGTG 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 2 cut(s) 127, 277
PkrI GCNGC 3 cut(s) 337, 493, 608
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 486
PspPI GGNCC 2 cut(s) 56, 200
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 399, 467
RsaI GTAC 2 cut(s) 88, 242
RsaNI GTAC 2 cut(s) 87, 241
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 336, 492, 607
Sau3AI GATC 7 cut(s) 43, 142, 163, 353, 399, 467, 524
Sau96I GGNCC 2 cut(s) 56, 200
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 512
Sse9I AATT 5 cut(s) 68, 343, 452, 629, 650
SsiI CCGC 2 cut(s) 106, 335
SspMI CTAG 2 cut(s) 404, 432
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 203, 360
TaiI ACGT 3 cut(s) 33, 512, 660
TaqI TCGA 4 cut(s) 46, 125, 145, 527
TasI AATT 5 cut(s) 68, 343, 452, 629, 650
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 127, 277
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 491, 606
TspDTI ATGAA 2 cut(s) 125, 657
TspRI CASTG 1 cut(s) 264
XapI RAATTY 3 cut(s) 68, 343, 629
XspI CTAG 2 cut(s) 404, 432
ZraI GACGTC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.